ID APF1_GIBF5 Reviewed; 5084 AA. AC S0DLP2; DT 07-SEP-2016, integrated into UniProtKB/Swiss-Prot. DT 18-SEP-2013, sequence version 1. DT 28-JUN-2023, entry version 42. DE RecName: Full=Apicidin F synthase {ECO:0000305}; DE EC=6.3.2.- {ECO:0000305|PubMed:25058475}; DE AltName: Full=Apicidin F synthesis protein 1 {ECO:0000303|PubMed:25058475}; DE AltName: Full=Non-ribosomal peptide synthetase apf1 {ECO:0000303|PubMed:25058475}; DE Short=NRPS apf1 {ECO:0000303|PubMed:25058475}; GN Name=apf1 {ECO:0000303|PubMed:25058475}; ORFNames=FFUJ_00003; OS Gibberella fujikuroi (strain CBS 195.34 / IMI 58289 / NRRL A-6831) (Bakanae OS and foot rot disease fungus) (Fusarium fujikuroi). OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; OC Hypocreomycetidae; Hypocreales; Nectriaceae; Fusarium; OC Fusarium fujikuroi species complex. OX NCBI_TaxID=1279085; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=CBS 195.34 / IMI 58289 / NRRL A-6831; RX PubMed=23825955; DOI=10.1371/journal.ppat.1003475; RA Wiemann P., Sieber C.M.K., von Bargen K.W., Studt L., Niehaus E.-M., RA Espino J.J., Huss K., Michielse C.B., Albermann S., Wagner D., RA Bergner S.V., Connolly L.R., Fischer A., Reuter G., Kleigrewe K., Bald T., RA Wingfield B.D., Ophir R., Freeman S., Hippler M., Smith K.M., Brown D.W., RA Proctor R.H., Muensterkoetter M., Freitag M., Humpf H.-U., Gueldener U., RA Tudzynski B.; RT "Deciphering the cryptic genome: genome-wide analyses of the rice pathogen RT Fusarium fujikuroi reveal complex regulation of secondary metabolism and RT novel metabolites."; RL PLoS Pathog. 9:E1003475-E1003475(2013). RN [2] RP FUNCTION, AND BIOTECHNOLOGY. RX PubMed=24195442; DOI=10.1021/np4006053; RA von Bargen K.W., Niehaus E.M., Bergander K., Brun R., Tudzynski B., RA Humpf H.U.; RT "Structure elucidation and antimalarial activity of apicidin F: an RT apicidin-like compound produced by Fusarium fujikuroi."; RL J. Nat. Prod. 76:2136-2140(2013). RN [3] RP FUNCTION, INDUCTION, AND DISRUPTION PHENOTYPE. RX PubMed=25058475; DOI=10.1371/journal.pone.0103336; RA Niehaus E.M., Janevska S., von Bargen K.W., Sieber C.M., Harrer H., RA Humpf H.U., Tudzynski B.; RT "Apicidin F: characterization and genetic manipulation of a new secondary RT metabolite gene cluster in the rice pathogen Fusarium fujikuroi."; RL PLoS ONE 9:E103336-E103336(2014). CC -!- FUNCTION: Non-ribosomal peptide synthetase; part of the gene cluster CC that mediates the biosynthesis of the cyclic tetrapeptide apicidin F CC (APF) (PubMed:25058475). The non-ribosomal peptide synthetase apf1 CC incorporates four different amino acids to produce apicidin F: L- CC phenylalanine, D-pipecolic acid (D-pip), N-methoxy-L-tryptophan and L- CC 2-aminooctanedioic acid (PubMed:25058475). L-Phenylalanine is the only CC proteinogenic amino acid directly used by apf1 (PubMed:24195442, CC PubMed:25058475). The 3 other apf1 substrates are non-proteinogenic and CC have to be modified by other enzymes of the cluster (PubMed:25058475). CC Lysine is converted to delta-1-pyrroline-5-carboxylate (P5C) which is CC reduced to L-pipecolic acid (L-pip) by apf3 (PubMed:25058475). L-pip is CC epimerized to D-pip, probably by apf1 activity, prior to incorporation CC (PubMed:25058475). L-Tryptophan is N-oxidyzed by one of the cytochrome CC P450 monooxygenases (apf7 or apf8), and further methylated at the CC hydroxy group by the O-methyltransferase apf6 to yield N-methoxy-L- CC tryptophan (PubMed:25058475). The synthesis of the fourth apf1 CC substrate is more complex (PubMed:25058475). The fatty acid synthase CC apf5 is involved in the synthesis of the octanoic acid backbone of L-2- CC aminooctanedioic acid by fixing one acetyl-CoA unit and three malonyl- CC CoA units (PubMed:25058475). Then one of the cytochrome P450 CC monooxygenases (apf7 or apf8) may oxidize this backbone to 2- CC oxooctanoic acid (PubMed:25058475). The aminotransferase apf4 is CC predicted to catalyze the exchange of the keto group with an amino CC group (PubMed:25058475). The next step would be the oxidation of 2- CC aminooctanoic acid by one of the cytochrome P450 monooxygenases (apf7 CC or apf8). The last step is the oxidation of 2-amino-8-hydroxyoctanoic CC acid to 2-aminooctanedioic acid is catalyzed by the FAD-dependent CC monooxygenase apf9 (PubMed:25058475). {ECO:0000269|PubMed:24195442, CC ECO:0000269|PubMed:25058475}. CC -!- PATHWAY: Secondary metabolite biosynthesis. CC {ECO:0000269|PubMed:25058475}. CC -!- INDUCTION: Expression is positively regulated by the apicidin F CC cluster-specific transcription factor apf2 that binds to the eight- CC base-pair motif 5'-TGACGTGA-3' called the 'Api-box' that is found in CC all promoters of the apicidin F cluster except in the promoter region CC of apf2 itself (PubMed:25058475). {ECO:0000269|PubMed:25058475}. CC -!- DISRUPTION PHENOTYPE: Leads to the loss of apicidin F production CC (PubMed:25058475). {ECO:0000269|PubMed:25058475}. CC -!- BIOTECHNOLOGY: Apicidin F, like the other known apicidins, is a cyclic CC tetrapeptides with anti-malarial properties via histone deacetylase CC inhibitory activity (PubMed:24195442). {ECO:0000269|PubMed:24195442}. CC -!- SIMILARITY: Belongs to the NRP synthetase family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; HF679023; CCT63360.1; -; Genomic_DNA. DR SMR; S0DLP2; -. DR STRING; 1279085.S0DLP2; -. DR EnsemblFungi; CCT63360; CCT63360; FFUJ_00003. DR VEuPathDB; FungiDB:FFUJ_00003; -. DR HOGENOM; CLU_000022_60_0_1; -. DR OrthoDB; 2787863at2759; -. DR BioCyc; MetaCyc:MON-19327; -. DR Proteomes; UP000016800; Chromosome 1. DR GO; GO:0016853; F:isomerase activity; IEA:UniProtKB-KW. DR GO; GO:0016874; F:ligase activity; IEA:UniProtKB-KW. DR GO; GO:0031177; F:phosphopantetheine binding; IEA:InterPro. DR GO; GO:0044249; P:cellular biosynthetic process; IEA:UniProt. DR CDD; cd05918; A_NRPS_SidN3_like; 4. DR CDD; cd19542; CT_NRPS-like; 1. DR CDD; cd19534; E_NRPS; 1. DR CDD; cd19545; FUM14_C_NRPS-like; 2. DR Gene3D; 3.30.300.30; -; 4. DR Gene3D; 1.10.1200.10; ACP-like; 4. DR Gene3D; 3.30.559.10; Chloramphenicol acetyltransferase-like domain; 5. DR Gene3D; 3.40.50.12780; N-terminal domain of ligase-like; 4. DR Gene3D; 3.30.559.30; Nonribosomal peptide synthetase, condensation domain; 5. DR InterPro; IPR010071; AA_adenyl_domain. DR InterPro; IPR036736; ACP-like_sf. DR InterPro; IPR045851; AMP-bd_C_sf. DR InterPro; IPR020845; AMP-binding_CS. DR InterPro; IPR000873; AMP-dep_Synth/Lig_com. DR InterPro; IPR042099; ANL_N_sf. DR InterPro; IPR023213; CAT-like_dom_sf. DR InterPro; IPR001242; Condensatn. DR InterPro; IPR020806; PKS_PP-bd. DR InterPro; IPR009081; PP-bd_ACP. DR InterPro; IPR006162; Ppantetheine_attach_site. DR PANTHER; PTHR45527:SF7; HYDROXAMATE-TYPE FERRICHROME SIDEROPHORE PEPTIDE SYNTHETASE; 1. DR PANTHER; PTHR45527; NONRIBOSOMAL PEPTIDE SYNTHETASE; 1. DR Pfam; PF00501; AMP-binding; 4. DR Pfam; PF00668; Condensation; 5. DR Pfam; PF00550; PP-binding; 3. DR SMART; SM00823; PKS_PP; 2. DR SUPFAM; SSF56801; Acetyl-CoA synthetase-like; 4. DR SUPFAM; SSF47336; ACP-like; 4. DR SUPFAM; SSF52777; CoA-dependent acyltransferases; 10. DR TIGRFAMs; TIGR01733; AA-adenyl-dom; 4. DR PROSITE; PS00455; AMP_BINDING; 3. DR PROSITE; PS50075; CARRIER; 4. DR PROSITE; PS00012; PHOSPHOPANTETHEINE; 1. PE 1: Evidence at protein level; KW Isomerase; Ligase; Phosphopantetheine; Phosphoprotein; Reference proteome; KW Repeat. FT CHAIN 1..5084 FT /note="Apicidin F synthase" FT /id="PRO_0000437156" FT DOMAIN 731..808 FT /note="Carrier 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" FT DOMAIN 2341..2415 FT /note="Carrier 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" FT DOMAIN 3463..3539 FT /note="Carrier 3" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" FT DOMAIN 4554..4631 FT /note="Carrier 4" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" FT REGION 209..606 FT /note="Adenylation 1" FT /evidence="ECO:0000255" FT REGION 822..1124 FT /note="Condensation 1" FT /evidence="ECO:0000255" FT REGION 1309..1609 FT /note="Condensation 2" FT /evidence="ECO:0000255" FT REGION 1788..2192 FT /note="Adenylation 2" FT /evidence="ECO:0000255" FT REGION 2415..2441 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 2478..2755 FT /note="Condensation 3" FT /evidence="ECO:0000255" FT REGION 2935..3328 FT /note="Adenylation 3" FT /evidence="ECO:0000255" FT REGION 3581..3866 FT /note="Condensation 4" FT /evidence="ECO:0000255" FT REGION 4029..4426 FT /note="Adenylation 4" FT /evidence="ECO:0000255" FT REGION 4669..4948 FT /note="Condensation 5" FT /evidence="ECO:0000255" FT COMPBIAS 2416..2441 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 768 FT /note="O-(pantetheine 4'-phosphoryl)serine" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" FT MOD_RES 2376 FT /note="O-(pantetheine 4'-phosphoryl)serine" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" FT MOD_RES 3500 FT /note="O-(pantetheine 4'-phosphoryl)serine" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" FT MOD_RES 4592 FT /note="O-(pantetheine 4'-phosphoryl)serine" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00258" SQ SEQUENCE 5084 AA; 562186 MW; DBCE0E79CE257757 CRC64; MAIKMIDKQV LACNLDAFAG RVTNSTDINE QAIEWLSPTP SAVTLEAAWC VTLRLYTGLD HLSFGSLTQD GIVATKLCNL GPHDTLEDVC SHVQLYDYSD DTVCHYNTAV IFKLDENEGK KLSELIPRGI DVALMVTGSN LGVLARASFM DADEARNLCQ NFRHVLNCFQ EPNQAVRGIT LSDNDVNQIL SWNKSQLTRT ESLIHDQFAR ILQRQPDKSA IESWDGNMTY RELDAASSSL AESLSRANIG PGSWVLFCFN KSRWAIVSML AILKAGGACV PLDPRHPKSR VVQILQATGA QHILVGDADN DIKNRLCNEF PSVKVIGVPH HEVCESQDID TISLSFDSPA IGLFTSGSTG TPKGIVATHA TICTGASSYA HHIGADDKTR VLQFASYTFD VCMVDVFTAL LHGGTLCIPS EEERMTGLQE YISRTQPNWA ALTPTVARVL DPALSSKSIR KILLVGEMVR ESDIAEWLDS GVQVYNVYGP AENNLITTAA KAIRGRASNV GTGINTHTWV ADVENERLVP IGAVGELICS GPHLTPGYLN DPERTASSFF EDLSWIPNMM DNKPFSRRFY RSGDLVRYCA DGSLQCVGRL DSQVKLGGQR VELSEIESYI KSHNAAVLVP KAGSMKNKLI AVLEGAGSSG QSLGISSCDP GVAQQVEQVL RKNLPSYMCP SIWISVPHLP LSSSGKLDRK VLMNKLETLS HEEYLGLILD HAQDEDDQDG HETDNCQRLL REACSQVLNI PVERIAMSRA FAGHGGDSIT AMQVSSLIKR TQTLVVTVKD LLTCHSLAEA ASSMREVVTS IQVPTAHPGK LYPLSPIQRL FMATAPTSVT WNHYNQSVLL RIRERRSSDH VKESLGGVVR RHAMLRGRFQ RVSSSEWMQR ILPDDQGNLF FEYFPDASDY KQREALMLKA RESLDIESGP LLRAQLFDGQ VEQGMLLFIV SHHLVVDLVS WRVILEELEV SLAQPYGNTT DANDISALLL PQESVPFPVW SELQHEAAKN MDPDRVIPQQ YAVPAPDFSY WGISSARNVY RDVIEKSISL GDMTTKNVLY ECHEALQTEP VDIFLSAILL SFKRAFPERP IPPIFNEGHG REPWTSDLDI SRTVGWFTTM FPIYVPNISA GDVVDTVRRV KDFRKGCAEN GFQYFSTKYL HEQGRKTFKD HIPAEIMFNY EGRYQSLEKE KSLLMAEAWE AGEALSDSAP ELQRFCLFEL SAAVLTDGEI HFTMAWNSRA RYQERISLWL TRLLPAVIDE IVTYLMLEKR QYTLSDLSQA RLSDYSDLET LMASVSTIPG IDSIEGVEEI YCGSPMQDSL ALSQSRISGG VYEIDLTWEV TDGRQGNYQV DVNRLVLAWN DVVARHAALR TVFLEAASSS NDVMLHQVVL RKYRPSTILM HTRDSSQALK QLSSCASYKK RGILIDKRPP HALAICSTDE GRTFVRFQVN HILFDGTSIA PLLRDLSRAY RNSHEVRREW TWNPFANFIR YIRDEKRRSD DLAYWKSYLA TARPCQFPTL KHEESIEAPG TEQQRGAVQV CMSDKPSSLR NFLADMGVTV PTLVQLVWAL VLRMYTSDSQ VAFGYLASGR DAPVVDIEQA VGPFISILVH FLDFDNEGQL PIADMLQRIQ DRSARSISHQ SRSLAEIQDA IGLTGSSLLF NTGISFMPKW TKDMQLRNGS GLIFDQIAAN DPTEFDISLI VETGDDGVDG MCIYVDYRTS TVGRMHAINI AASFDHILSQ IIQDPSVPLN DVSGISTRDF DQISNWNRLL SPPKDKCLHD LFIEKVIEDP TREAVFSWDG SMSYGELHDL SARLANYLVH LGVGPEQMIP ICFEKSVWTV VTILAVLKAG GCFVLLDPTH PASRLWNIVG EIEASILLCS PLTNRSKKLD ASPDMNARKA AIIEIHPSFV NNLKSVSRES QHTPLCPSLS PDNAAYVVFT SGSTGIPKGV VVTHRAVVTG LDELGRAAGM TAMGSGTRTL QFASYSFDAS IADIFCALQL GGCVCVMSDE GRSPADITDF IQRSRATYAG ITPSFASLLD PRLVPSLRVL CFSGEALPAS QIEAWSGYVK MVNMYGPTEA SIACIANSEV TRTTDASNIG RAFRGSTWIV DENDHNQLRA IGSSGELLIE GPILAREYLK RPEQTAQAFI SNPPWLQNIR PNSRLYKTGD MVRYNTNGTI SYIGRKDNQI KINGQRVEVS EIEETLRASI EPEAGLITVE LLDRKALGEA DVLTAFVYIA GHDPSSTRDD KADNKKPFTI PDNPLLLEYF RSMLPRLESS SSKMPRYMVP QAYIPIDSLP LTTSGKVDRR ALRHAAAQLN RNQLFSFASS LDMVHEPSVD VVKDDPVSEL AHLWESVLNV RVSGTQSNFF RLGGNSMAAM NLRSQARKAG FQLSVADILA NPTLSDMAKG MAPLSLTAPE STSSSSPQSF STSTSTTIIE NDPDTSPFSL LRTRGIALNE GLWQQMFDNA DILWSEVEDI FPCTPMQEGL MVLSAHREGH GAYALHAPYK LPSDLDLAKL QFAWEQTTMV HAILRSRIVT HSQGALIVLQ KSPVVVQQST CSTLDDHLEE QRRLIFGYGV PLFRMTMVFD QIAQCHYFVM SIHHALFDGW SFSRMWDTAL AIYQGRQLSR DIPSFQSFVQ HLGAAPLSAS KEYWKSHLVE QDRDGFQFPA VPSTHKPIAT ASASFEFAFQ STIAMSAGVT PSTMVHAAWA ILLSQYTASS TVNFGVTLSG RDFPMPGLDQ VVGATIVTLP RQLNINLNQN VIEFLEYVQQ EAANVIPHQY LGIHEIRALG LEAQQACNFS TLILVNHNTV DLDSPLSVFG ITQVPVDSVD FHPYPLAVEF TVQPESLVVN VCYDPVCIGG SMVESVMQQY DHVLQSLSEG LMCSSGLSGT NLASIMTGIA PAHLQKMLDW NKDGHRYGAS RQTHLVLDHI GLNTRNNPRA RAVVADDSTL SYAELNRLAR VVSHRITQLD ISGEFIAVCF DKSAAAIVSM LAVLQTGFAF MPISASQPPA RLENLLTAAN VQVVLTSPAH TDLLSGLSSH RRIVPVDLKD IDQHEQMQLN RSGSAVDKSR AAYLLYTSGT TGQPKGVVVQ HGAWSKAIAS QIDFFGFTRD TKMLQFSNYT FDASIFEIFI TLCSGGCLFV PSEHSRVNDL EGFIRTNELN TITLTPTVAR VIRPGQLPCV RQCLFGGESL TQSDIFAWAQ QGRRVTNCYG PTEACVFSCG RDIRLDATDT KVTNIGRPVG INAWIISSMS GSISPIGAPG ELCLEGQMLA RGYLNDPERT QLSFSNHLPN NIPGKKNSRT YRTGDMVCHE ADGTLNFLGR RDGQIKLRGH RIDVGEIEHH IQHAMADDST YHSSTVQVYW KDTRNKSDAE LAALLRMDIQ HKECVMGVPC SLLSMPGRAD ESPTASQLKF KLRRILPEHM TPNTFIAVQH FPTTASGKLD RSFAQRCVEY FVPYTQKEVN KNETWSSSEA IVREWWCSIL GVNTDLICRH DNFFGLGGNS IYAIRLVGLA RSNGHHLQYE DVFSSPVLAD MASRLSRPED SRVQSETRQP PEPFQLISES DLKSVMDDIL PLYNINKDEV EDIYPCTPLQ ATLMAETARH RGVYILAESI QVPSSQMTLF QDAWLLMFKS YEILRTRIVL SHDQSHGEWQ VVMKYQPLTW TEFPDAKSFI EFVYNTHDYG KPLVHLAILG GNGGRIKDTD HSVKVGLCVH HAAYDGWSLS NIWRTITKKL TSSSSYSVGP YTPFNTYIRH LTEQDPEKAK SYWKERFSGL SSASLIPRPQ DPGHQSSATD TIQRNLDLPT LSDHLLGKTA IVAQAAWAIT ISHYTANSDT LCGTILSGRE YAAASVPGVE TIVGPTIATV PSRTTINYDS CVLDLITAVQ KDNLNAVRFS HMGLEQISRL NLDCRQACKF DNLFWVQPDL DETPANSIIR DIINVRGFSS SPMVLEIQLP AEGQKVVVNM SFDRVAVSNQ QAELIVDTYI TIMDNLLHAP LDTRLRSIAA LSPAHISQIS RVSSSPVEAV QACVHDLVRK QVELSPSHTA IDAWDGSMAY AALDALSTSL AEKLSGLGIG PESPVCILFE KSKWAIVAML GVVKTGGCFV PLNPQSPIKR LQHLVESVDA SIILVSPQYE ELSISLSLHH VKILVISQDT IPSPISALKP SRAFPSSVGP QNAAYILFTS GSTGLPKGVV IEHQALCSSL TVLSSRVGLN SNSRVFQFNA YWFDVMLLDV FGTLISGGTI CAPSESDCMD DLAGSINKFN ANTIAALSTS VSRLIEPSSI PCLNTLGLGG EPVLSSDRDR WAPHVRLFSM YGPTETCIVS LMTDMTSTTP ASLLGHPVGC RVWIVNPLKN DELAPLGGIG ELFIEGPGLA RYYLVDEDKT AAAFLSNQSW TIQDPSFQGS RRFYKTGDLV RINTDGTVSW IGRKDHSQVK IRGQRVELAE IEETIRQHIP SALTVAVDIL IDGERRILAA VFGTNLMLPG LSDTEVEVYM EKLIKGLLPK LNGSLPKHMV PTAFIPLPFL PFLSTGKLDR KALHRLALPL AVELTKRTST NRQALKTPKE RLLSALWSEV LSTSKGEPAG PADNFFNAGG DSMMAMKLVA MARHRGLTLS VVDIFKNPIL SDMADLLGPL RHEEEPSKED STHMLPIDTS SKLKDSLYEV LTVPPDRIEQ IYPCTAYQEM FLSGTEVWPG AHVTQFIFSI DKGTDMHRLE KAMGRCTAEF PTLRTRIVRH GESGQLLQVV LHKGHEAPWS IHLTDDLDSA LDQEKKDHWM HSGLSEPLHR LSLVMNNSGC THLIWSLNHA AYDAWSFGMM LRSLGQDRAN STRHSRTCLP FNGLIRHISK LRDASSESRR FWRSYIADIG SQVLLFRYPS IADPRQDRLA VHQVSFPKHG GRSSTSLITA AWIMLLARLS HRKDITIAYL VTGRTLPLGG IDTCPGPLIS KLPLRIQLLD EPRGLVDVAD LVRIETVRVM PHEHTGLDAI KDLASQDDDD IHPHAASLLG RFPLDLAIHP AGHTDVDAAR SIGITHIGQK VVVPPPGTFS AECSIISEDN YIAVSLAVIW DNRAMDEDDV NRVVEIWKDI IVRG //