ID R0GMC6_9BRAS Unreviewed; 374 AA. AC R0GMC6; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 02-JUN-2021, entry version 31. DE RecName: Full=Pectate lyase {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}; DE EC=4.2.2.2 {ECO:0000256|ARBA:ARBA00012272, ECO:0000256|RuleBase:RU361123}; GN ORFNames=CARUB_v10006459mg {ECO:0000313|EMBL:EOA18019.1}; OS Capsella rubella. OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella. OX NCBI_TaxID=81985 {ECO:0000313|EMBL:EOA18019.1, ECO:0000313|Proteomes:UP000029121}; RN [1] {ECO:0000313|Proteomes:UP000029121} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Monte Gargano {ECO:0000313|Proteomes:UP000029121}; RX PubMed=23749190; DOI=10.1038/ng.2669; RA Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., RA Steige K., Platts A.E., Escobar J.S., Newman L.K., Wang W., Mandakova T., RA Vello E., Smith L.M., Henz S.R., Steffen J., Takuno S., Brandvain Y., RA Coop G., Andolfatto P., Hu T.T., Blanchette M., Clark R.M., Quesneville H., RA Nordborg M., Gaut B.S., Lysak M.A., Jenkins J., Grimwood J., Chapman J., RA Prochnik S., Shu S., Rokhsar D., Schmutz J., Weigel D., Wright S.I.; RT "The Capsella rubella genome and the genomic consequences of rapid mating RT system evolution."; RL Nat. Genet. 45:831-835(2013). CC -!- CATALYTIC ACTIVITY: CC Reaction=Eliminative cleavage of (1->4)-alpha-D-galacturonan to give CC oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at CC their non-reducing ends.; EC=4.2.2.2; CC Evidence={ECO:0000256|ARBA:ARBA00000695, CC ECO:0000256|RuleBase:RU361123}; CC -!- COFACTOR: CC Name=Ca(2+); Xref=ChEBI:CHEBI:29108; CC Evidence={ECO:0000256|ARBA:ARBA00001913}; CC -!- COFACTOR: CC Name=Ca(2+); Xref=ChEBI:CHEBI:29108; CC Evidence={ECO:0000256|RuleBase:RU361123}; CC Note=Binds 1 Ca(2+) ion. Required for its activity. CC {ECO:0000256|RuleBase:RU361123}; CC -!- PATHWAY: Glycan metabolism. {ECO:0000256|ARBA:ARBA00004881}. CC -!- PATHWAY: Glycan metabolism; pectin degradation; 2-dehydro-3-deoxy-D- CC gluconate from pectin: step 2/5. {ECO:0000256|ARBA:ARBA00005220, CC ECO:0000256|RuleBase:RU361123}. CC -!- SIMILARITY: Belongs to the polysaccharide lyase 1 family. CC {ECO:0000256|RuleBase:RU361123}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; KB870811; EOA18019.1; -; Genomic_DNA. DR RefSeq; XP_006285121.1; XM_006285059.1. DR STRING; 81985.XP_006285121.1; -. DR GeneID; 17878980; -. DR KEGG; crb:17878980; -. DR eggNOG; ENOG502QSYA; Eukaryota. DR OrthoDB; 924221at2759; -. DR UniPathway; UPA00545; UER00824. DR Proteomes; UP000029121; Unassembled WGS sequence. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0030570; F:pectate lyase activity; IEA:UniProtKB-EC. DR GO; GO:0045490; P:pectin catabolic process; IEA:UniProtKB-UniPathway. DR Gene3D; 2.160.20.10; -; 1. DR InterPro; IPR018082; AmbAllergen. DR InterPro; IPR002022; Pec_lyase. DR InterPro; IPR012334; Pectin_lyas_fold. DR InterPro; IPR011050; Pectin_lyase_fold/virulence. DR Pfam; PF00544; Pectate_lyase_4; 1. DR PRINTS; PR00807; AMBALLERGEN. DR SMART; SM00656; Amb_all; 1. DR SUPFAM; SSF51126; SSF51126; 1. PE 3: Inferred from homology; KW Calcium {ECO:0000256|ARBA:ARBA00022837, ECO:0000256|RuleBase:RU361123}; KW Lyase {ECO:0000256|ARBA:ARBA00023239, ECO:0000256|RuleBase:RU361123}; KW Metal-binding {ECO:0000256|ARBA:ARBA00022723, KW ECO:0000256|RuleBase:RU361123}; KW Reference proteome {ECO:0000313|Proteomes:UP000029121}; KW Signal {ECO:0000256|RuleBase:RU361123}. FT SIGNAL 1..24 FT /evidence="ECO:0000256|RuleBase:RU361123" FT CHAIN 25..374 FT /note="Pectate lyase" FT /evidence="ECO:0000256|RuleBase:RU361123" FT /id="PRO_5005145123" FT DOMAIN 113..297 FT /note="Amb_all" FT /evidence="ECO:0000259|SMART:SM00656" SQ SEQUENCE 374 AA; 40374 MW; DA7E8BB9FDDFFBCF CRC64; MDSLVITISL VFAILASLLV ESSAHNHSDD GYTLATATLN PIDACWRKNP KWSTNRQALA HCAVGFGKAA LGGKAGAIYV VTSPLDDPVK PKPGTLRFGV IQSKPLWITF ARSMVIVLKV ELSVNSYKTI DGRGAKVEIA NGPCVRMRLV KHVIIHGISI HDCKPGPKEG PDGDAIRVFQ SSHIWIDHCF LSRSQDGLID VISSSTAVTI SNNKFTNHDK VILLGHDDKF TGDKVMKVTV AFNYFGPGLI ERMPRVRRGY AHVANNRYDK WKMYAIGGSA DPIIFSEGNY FVAPDNKNAK EVTKRVGSAA EIKKWKWGTS KDVFLNGAFF VPSGGPAVKP AYAKGEAFPV APGSLVPSLT ASAGPLNCVV GKIC //