ID   TNR12_HUMAN             Reviewed;         129 AA.
AC   Q9NP84; D3DUA6; Q9HCS0;
DT   27-MAY-2002, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-2000, sequence version 1.
DT   22-APR-2020, entry version 156.
DE   RecName: Full=Tumor necrosis factor receptor superfamily member 12A;
DE   AltName: Full=Fibroblast growth factor-inducible immediate-early response protein 14;
DE            Short=FGF-inducible 14;
DE   AltName: Full=Tweak-receptor;
DE            Short=TweakR;
DE   AltName: CD_antigen=CD266;
DE   Flags: Precursor;
GN   Name=TNFRSF12A; Synonyms=FN14;
OS   Homo sapiens (Human).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae;
OC   Homo.
OX   NCBI_TaxID=9606;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
RC   TISSUE=Placenta;
RX   PubMed=10751351; DOI=10.1016/s0002-9440(10)64996-6;
RA   Feng S.-L.Y., Guo Y., Factor V.M., Thorgeirsson S.S., Bell D.W.,
RA   Testa J.R., Peifley K.A., Winkles J.A.;
RT   "The Fn14 immediate-early response gene is induced during liver
RT   regeneration and highly expressed in both human and murine hepatocellular
RT   carcinomas.";
RL   Am. J. Pathol. 156:1253-1261(2000).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2).
RA   Tanaka S., Sugimachi K.;
RT   "Human homologue of Fn14.";
RL   Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M.,
RA   Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J.,
RA   Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S.,
RA   Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H.,
RA   Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K.,
RA   Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D.,
RA   Hunkapiller M.W., Myers E.W., Venter J.C.;
RL   Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
RC   TISSUE=Uterus;
RX   PubMed=15489334; DOI=10.1101/gr.2596504;
RG   The MGC Project Team;
RT   "The status, quality, and expansion of the NIH full-length cDNA project:
RT   the Mammalian Gene Collection (MGC).";
RL   Genome Res. 14:2121-2127(2004).
RN   [5]
RP   FUNCTION.
RX   PubMed=11728344; DOI=10.1016/s1074-7613(01)00232-1;
RA   Wiley S.R., Cassiano L., Lofton T., Davis-Smith T., Winkles J.A.,
RA   Lindner V., Liu H., Daniel T.O., Smith C.A., Fanslow W.C.;
RT   "A novel TNF receptor family member binds TWEAK and is implicated in
RT   angiogenesis.";
RL   Immunity 15:837-846(2001).
RN   [6]
RP   STRUCTURE BY NMR OF 26-70.
RG   RIKEN structural genomics initiative (RSGI);
RT   "Solution structure of the STN_TNFRSF12A_TNFR domain of tumor necrosis
RT   factor receptor superfamily member 12A precursor.";
RL   Submitted (APR-2008) to the PDB data bank.
RN   [7]
RP   STRUCTURE BY NMR OF 26-70, AND DISULFIDE BONDS.
RX   PubMed=19241374; DOI=10.1002/pro.49;
RA   He F., Dang W., Saito K., Watanabe S., Kobayashi N., Guntert P., Kigawa T.,
RA   Tanaka A., Muto Y., Yokoyama S.;
RT   "Solution structure of the cysteine-rich domain in Fn14, a member of the
RT   tumor necrosis factor receptor superfamily.";
RL   Protein Sci. 18:650-656(2009).
CC   -!- FUNCTION: Receptor for TNFSF12/TWEAK. Weak inducer of apoptosis in some
CC       cell types. Promotes angiogenesis and the proliferation of endothelial
CC       cells. May modulate cellular adhesion to matrix proteins.
CC       {ECO:0000269|PubMed:11728344}.
CC   -!- SUBUNIT: Associates with TRAF1 and TRAF2, and probably also with TRAF3.
CC   -!- INTERACTION:
CC       Q9NP84; Q13490: BIRC2; NbExp=2; IntAct=EBI-2851995, EBI-514538;
CC       Q9NP84; Q9BYR6: KRTAP3-3; NbExp=3; IntAct=EBI-2851995, EBI-3957694;
CC       Q9NP84; Q9BRI3: SLC30A2; NbExp=9; IntAct=EBI-2851995, EBI-8644112;
CC       Q9NP84; O43508: TNFSF12; NbExp=2; IntAct=EBI-2851995, EBI-6932080;
CC       Q9NP84; Q12933: TRAF2; NbExp=3; IntAct=EBI-2851995, EBI-355744;
CC   -!- SUBCELLULAR LOCATION: Membrane; Single-pass type I membrane protein.
CC   -!- ALTERNATIVE PRODUCTS:
CC       Event=Alternative splicing; Named isoforms=2;
CC       Name=1;
CC         IsoId=Q9NP84-1; Sequence=Displayed;
CC       Name=2;
CC         IsoId=Q9NP84-2; Sequence=VSP_006519;
CC   -!- TISSUE SPECIFICITY: Highly expressed in heart, placenta and kidney.
CC       Intermediate expression in lung, skeletal muscle and pancreas.
CC   -!- INDUCTION: By FGF1 and phorbol ester.
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DR   EMBL; AF191148; AAF69108.1; -; mRNA.
DR   EMBL; AB035480; BAA94792.1; -; mRNA.
DR   EMBL; AB035481; BAB17850.1; -; mRNA.
DR   EMBL; CH471112; EAW85429.1; -; Genomic_DNA.
DR   EMBL; CH471112; EAW85430.1; -; Genomic_DNA.
DR   EMBL; BC002718; AAH02718.1; -; mRNA.
DR   CCDS; CCDS10489.1; -. [Q9NP84-1]
DR   RefSeq; NP_057723.1; NM_016639.2. [Q9NP84-1]
DR   PDB; 2EQP; NMR; -; A=28-70.
DR   PDB; 2KMZ; NMR; -; A=28-80.
DR   PDB; 2RPJ; NMR; -; A=28-70.
DR   PDBsum; 2EQP; -.
DR   PDBsum; 2KMZ; -.
DR   PDBsum; 2RPJ; -.
DR   SMR; Q9NP84; -.
DR   BioGrid; 119478; 4.
DR   IntAct; Q9NP84; 6.
DR   MINT; Q9NP84; -.
DR   STRING; 9606.ENSP00000326737; -.
DR   ChEMBL; CHEMBL3712850; -.
DR   PhosphoSitePlus; Q9NP84; -.
DR   SwissPalm; Q9NP84; -.
DR   BioMuta; TNFRSF12A; -.
DR   DMDM; 21263626; -.
DR   EPD; Q9NP84; -.
DR   jPOST; Q9NP84; -.
DR   MassIVE; Q9NP84; -.
DR   MaxQB; Q9NP84; -.
DR   PaxDb; Q9NP84; -.
DR   PeptideAtlas; Q9NP84; -.
DR   PRIDE; Q9NP84; -.
DR   ProteomicsDB; 81927; -. [Q9NP84-1]
DR   ProteomicsDB; 81928; -. [Q9NP84-2]
DR   ABCD; Q9NP84; -.
DR   Antibodypedia; 2115; 527 antibodies.
DR   DNASU; 51330; -.
DR   Ensembl; ENST00000326577; ENSP00000326737; ENSG00000006327. [Q9NP84-1]
DR   Ensembl; ENST00000341627; ENSP00000343894; ENSG00000006327. [Q9NP84-2]
DR   GeneID; 51330; -.
DR   KEGG; hsa:51330; -.
DR   UCSC; uc002csv.5; human. [Q9NP84-1]
DR   CTD; 51330; -.
DR   DisGeNET; 51330; -.
DR   GeneCards; TNFRSF12A; -.
DR   HGNC; HGNC:18152; TNFRSF12A.
DR   HPA; ENSG00000006327; Tissue enhanced (placenta).
DR   MIM; 605914; gene.
DR   neXtProt; NX_Q9NP84; -.
DR   OpenTargets; ENSG00000006327; -.
DR   PharmGKB; PA134976874; -.
DR   eggNOG; ENOG410IYHX; Eukaryota.
DR   eggNOG; ENOG41116AK; LUCA.
DR   GeneTree; ENSGT00390000001948; -.
DR   InParanoid; Q9NP84; -.
DR   KO; K05149; -.
DR   OMA; HSDFCRG; -.
DR   OrthoDB; 1502512at2759; -.
DR   PhylomeDB; Q9NP84; -.
DR   TreeFam; TF337901; -.
DR   Reactome; R-HSA-5668541; TNFR2 non-canonical NF-kB pathway.
DR   Reactome; R-HSA-5676594; TNF receptor superfamily (TNFSF) members mediating non-canonical NF-kB pathway.
DR   SIGNOR; Q9NP84; -.
DR   ChiTaRS; TNFRSF12A; human.
DR   EvolutionaryTrace; Q9NP84; -.
DR   GeneWiki; TNFRSF12A; -.
DR   GenomeRNAi; 51330; -.
DR   Pharos; Q9NP84; Tbio.
DR   PRO; PR:Q9NP84; -.
DR   Proteomes; UP000005640; Chromosome 16.
DR   RNAct; Q9NP84; protein.
DR   Bgee; ENSG00000006327; Expressed in cortex of kidney and 199 other tissues.
DR   ExpressionAtlas; Q9NP84; baseline and differential.
DR   Genevisible; Q9NP84; HS.
DR   GO; GO:0009986; C:cell surface; IEA:Ensembl.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR   GO; GO:0001726; C:ruffle; IEA:Ensembl.
DR   GO; GO:0001525; P:angiogenesis; IEA:UniProtKB-KW.
DR   GO; GO:0097191; P:extrinsic apoptotic signaling pathway; IEA:Ensembl.
DR   GO; GO:0043065; P:positive regulation of apoptotic process; IDA:UniProtKB.
DR   GO; GO:0045773; P:positive regulation of axon extension; IEA:Ensembl.
DR   GO; GO:2001238; P:positive regulation of extrinsic apoptotic signaling pathway; IMP:UniProtKB.
DR   GO; GO:0045765; P:regulation of angiogenesis; IEA:Ensembl.
DR   GO; GO:0061041; P:regulation of wound healing; IDA:UniProtKB.
DR   GO; GO:0006931; P:substrate-dependent cell migration, cell attachment to substrate; IEA:Ensembl.
DR   GO; GO:0033209; P:tumor necrosis factor-mediated signaling pathway; TAS:Reactome.
DR   CDD; cd13413; TNFRSF12A; 1.
DR   InterPro; IPR022316; TNFR_12.
DR   PANTHER; PTHR32037; PTHR32037; 2.
DR   Pfam; PF12191; stn_TNFRSF12A; 1.
DR   PRINTS; PR01962; TNFACTORR12.
PE   1: Evidence at protein level;
KW   3D-structure; Alternative splicing; Angiogenesis; Apoptosis; Cell adhesion;
KW   Developmental protein; Differentiation; Disulfide bond; Membrane; Receptor;
KW   Reference proteome; Signal; Transmembrane; Transmembrane helix.
FT   SIGNAL          1..27
FT                   /evidence="ECO:0000255"
FT   CHAIN           28..129
FT                   /note="Tumor necrosis factor receptor superfamily member
FT                   12A"
FT                   /id="PRO_0000034611"
FT   TOPO_DOM        28..80
FT                   /note="Extracellular"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        81..101
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        102..129
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   REPEAT          36..67
FT                   /note="TNFR-Cys; atypical"
FT   DISULFID        36..49
FT                   /evidence="ECO:0000269|PubMed:19241374"
FT   DISULFID        52..67
FT                   /evidence="ECO:0000269|PubMed:19241374"
FT   DISULFID        55..64
FT                   /evidence="ECO:0000269|PubMed:19241374"
FT   VAR_SEQ         33..67
FT                   /note="Missing (in isoform 2)"
FT                   /evidence="ECO:0000303|Ref.2"
FT                   /id="VSP_006519"
FT   HELIX           30..33
FT                   /evidence="ECO:0000244|PDB:2EQP"
FT   STRAND          41..43
FT                   /evidence="ECO:0000244|PDB:2EQP"
FT   TURN            44..47
FT                   /evidence="ECO:0000244|PDB:2EQP"
FT   STRAND          48..50
FT                   /evidence="ECO:0000244|PDB:2EQP"
FT   HELIX           52..57
FT                   /evidence="ECO:0000244|PDB:2EQP"
FT   HELIX           62..65
FT                   /evidence="ECO:0000244|PDB:2EQP"
SQ   SEQUENCE   129 AA;  13911 MW;  BF3FDFB9C1E1C448 CRC64;
     MARGSLRRLL RLLVLGLWLA LLRSVAGEQA PGTAPCSRGS SWSADLDKCM DCASCRARPH
     SDFCLGCAAA PPAPFRLLWP ILGGALSLTF VLGLLSGFLV WRRCRRREKF TTPIEETGGE
     GCPAVALIQ
//