ID   Q9FLE2_ARATH            Unreviewed;       424 AA.
AC   Q9FLE2;
DT   01-MAR-2001, integrated into UniProtKB/TrEMBL.
DT   01-MAR-2001, sequence version 1.
DT   03-SEP-2014, entry version 70.
DE   RecName: Full=Protein CLP1 homolog;
GN   Name=CLPS5; OrderedLocusNames=At5g39930;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=9628582; DOI=10.1093/dnares/5.1.41;
RA   Sato S., Kaneko T., Kotani H., Nakamura Y., Asamizu E., Miyajima N.,
RA   Tabata S.;
RT   "Structural analysis of Arabidopsis thaliana chromosome 5. IV.
RT   Sequence features of the regions of 1,456,315 bp covered by nineteen
RT   physically assigned P1 and TAC clones.";
RL   DNA Res. 5:41-54(1998).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RG   Kazusa DNA Research Institute;
RG   Cold Spring Harbor and Washington University in St Louis Sequencing
RG   Consortium;
RG   European Union Arabidopsis Genome Sequencing Consortium;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
RA   Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
RA   Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
RA   Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
RA   Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
RA   Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
RA   Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
RA   Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
RA   Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
RA   Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
RA   Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
RA   Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
RA   Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
RA   Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
RA   van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
RA   Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
RA   Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
RA   Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:823-826(2000).
RN   [3]
RP   NUCLEOTIDE SEQUENCE.
RA   Underwood B.A., Xiao Y., Moskal W., Monaghan E., Wang W., Redman J.,
RA   Wu H.C., Utterback T., Town C.D.;
RL   Submitted (MAR-2005) to the EMBL/GenBank/DDBJ databases.
RN   [4]
RP   NUCLEOTIDE SEQUENCE.
RG   TAIR;
RA   Swarbreck D., Lamesch P., Wilks C., Huala E.;
RL   Submitted (FEB-2011) to the EMBL/GenBank/DDBJ databases.
RN   [5]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Resource (TAIR);
RL   Submitted (APR-2011) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Required for endonucleolytic cleavage during
CC       polyadenylation-dependent pre-mRNA 3'-end formation (By
CC       similarity).
CC   -!- SUBCELLULAR LOCATION: Nucleus (By similarity).
CC   -!- SIMILARITY: Belongs to the Clp1 family. Clp1 subfamily.
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DR   EMBL; AY954872; AAX55198.1; -; mRNA.
DR   EMBL; CP002688; AED94492.1; -; Genomic_DNA.
DR   EMBL; AB010077; BAB10217.1; -; Genomic_DNA.
DR   RefSeq; NP_198809.2; NM_123356.3.
DR   UniGene; At.55267; -.
DR   STRING; 3702.AT5G39930.1-P; -.
DR   EnsemblPlants; AT5G39930.1; AT5G39930.1; AT5G39930.
DR   GeneID; 833990; -.
DR   KEGG; ath:AT5G39930; -.
DR   TAIR; AT5G39930; -.
DR   eggNOG; COG5623; -.
DR   HOGENOM; HOG000231935; -.
DR   InParanoid; Q9FLE2; -.
DR   KO; K14399; -.
DR   OMA; GENQWER; -.
DR   BioCyc; ARA:AT5G39930-MONOMER; -.
DR   Reactome; REACT_180054; mRNA Splicing - Major Pathway.
DR   Genevestigator; Q9FLE2; -.
DR   GO; GO:0005849; C:mRNA cleavage factor complex; IEA:InterPro.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-HAMAP.
DR   GO; GO:0031124; P:mRNA 3'-end processing; IEA:UniProtKB-HAMAP.
DR   Gene3D; 3.40.50.300; -; 2.
DR   HAMAP; MF_03035; Clp1; 1.
DR   InterPro; IPR028606; Clp1.
DR   InterPro; IPR029007; MobB-typ_P-loop.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR010655; Pre-mRNA_cleavage_cplxII_Clp1.
DR   Pfam; PF06807; Clp1; 1.
DR   Pfam; PF03205; MobB; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Complete proteome; mRNA processing; Nucleotide-binding;
KW   Nucleus; Reference proteome.
FT   BINDING      16     16       ATP (By similarity){EA11}.
SQ   SEQUENCE   424 AA;  47489 MW;  50CC9AE9B42B32C9 CRC64;
     MFGPQIRRVK LEKQSELRIE LQPTSPLRLR LLDGKAEIFG YELPHEVWIT FPPLMTFAVF
     TWYGATIEID GITGNEYISC ETPMVNYLGL HNSLQVQRHR VTSSTRDSAS SQEGPRVIIV
     GDIDSGKSTL AKMLLNWAVK DGWKPTFVDL NVGQSSITIP GTIAAAPIKM LVDPVEGFPL
     DKALIHYFGL TNPSVNLRLY RTLVEELARE LKEEFSANAE SRASGMVIDT MGFIVREGYA
     LLLHAIRTFN ASLVIVVGQE EKLVYDLKKN LKFKKNLQVL NLEKSEGVFS RSSDFRKTLR
     NSNIQNYFYG VTNDLTVYTK TVKFSDVQVY RIGDFRVSGS TSAHQRGNDP LKITLVTIDE
     HLVNKVLAIS YAIKPDQIIS SIVAGFVCIK NVDISEERIT YVSPSAAELP SKILILGTLT
     WHVT
//