ID CAS9_LISIN Reviewed; 1334 AA. AC Q927P4; DT 06-MAR-2013, integrated into UniProtKB/Swiss-Prot. DT 01-DEC-2001, sequence version 1. DT 01-APR-2015, entry version 71. DE RecName: Full=CRISPR-associated endonuclease Cas9 {ECO:0000255|HAMAP-Rule:MF_01480}; DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01480}; GN Name=cas9 {ECO:0000255|HAMAP-Rule:MF_01480}; Synonyms=csn1; GN OrderedLocusNames=lin2744; OS Listeria innocua serovar 6a (strain CLIP 11262). OC Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria. OX NCBI_TaxID=272626; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=CLIP 11262; RX PubMed=11679669; DOI=10.1126/science.1063447; RA Glaser P., Frangeul L., Buchrieser C., Rusniok C., Amend A., RA Baquero F., Berche P., Bloecker H., Brandt P., Chakraborty T., RA Charbit A., Chetouani F., Couve E., de Daruvar A., Dehoux P., RA Domann E., Dominguez-Bernal G., Duchaud E., Durant L., Dussurget O., RA Entian K.-D., Fsihi H., Garcia-del Portillo F., Garrido P., RA Gautier L., Goebel W., Gomez-Lopez N., Hain T., Hauf J., Jackson D., RA Jones L.-M., Kaerst U., Kreft J., Kuhn M., Kunst F., Kurapkat G., RA Madueno E., Maitournam A., Mata Vicente J., Ng E., Nedjari H., RA Nordsiek G., Novella S., de Pablos B., Perez-Diaz J.-C., Purcell R., RA Remmel B., Rose M., Schlueter T., Simoes N., Tierrez A., RA Vazquez-Boland J.-A., Voss H., Wehland J., Cossart P.; RT "Comparative genomics of Listeria species."; RL Science 294:849-852(2001). RN [2] RP FUNCTION AS AN DNA ENDONUCLEASE, SUBUNIT, POSSIBLE BIOTECHNOLOGY, AND RP RNA-BINDING. RC STRAIN=CLIP 11262; RX PubMed=22745249; DOI=10.1126/science.1225829; RA Jinek M., Chylinski K., Fonfara I., Hauer M., Doudna J.A., RA Charpentier E.; RT "A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial RT immunity."; RL Science 337:816-821(2012). CC -!- FUNCTION: CRISPR (clustered regularly interspaced short CC palindromic repeat) is an adaptive immune system that provides CC protection against mobile genetic elements (viruses, transposable CC elements and conjugative plasmids). CRISPR clusters contain CC spacers, sequences complementary to antecedent mobile elements, CC and target invading nucleic acids. CRISPR clusters are transcribed CC and processed into CRISPR RNA (crRNA). In type II CRISPR systems CC correct processing of pre-crRNA requires a trans-encoded small RNA CC (tracrRNA), endogenous ribonuclease 3 (rnc) and this protein. The CC tracrRNA serves as a guide for ribonuclease 3-aided processing of CC pre-crRNA. Subsequently Cas9/crRNA/tracrRNA endonucleolytically CC cleaves linear or circular dsDNA target complementary to the CC spacer; Cas9 is inactive in the absence of the 2 guide RNAs CC (gRNA). Cas9 recognizes the protospacer adjacent motif (PAM) in CC the CRISPR repeat sequences to help distinguish self versus CC nonself, as targets within the bacterial CRISPR locus do not have CC PAMs. PAM recognition is also required for catalytic activity. CC {ECO:0000255|HAMAP-Rule:MF_01480}. CC -!- COFACTOR: CC Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Evidence={ECO:0000305}; CC Note=Endonuclease activity on target dsDNA requires Mg(2+). CC {ECO:0000305}; CC -!- SUBUNIT: Monomer (By similarity). Binds crRNA and tracrRNA. CC {ECO:0000255|HAMAP-Rule:MF_01480, ECO:0000269|PubMed:22745249}. CC -!- DOMAIN: Has 2 endonuclease domains. The RuvC-like domain (in the CC N-terminus) cleaves the target DNA noncomplementary to crRNA while CC the HNH nuclease domain cleaves the target DNA complementary to CC crRNA (By similarity). {ECO:0000250}. CC -!- BIOTECHNOLOGY: The simplicity of the Cas9-gRNAs RNA-directed DNA CC endonuclease activity may be used to target and modify a DNA CC sequence of interest. CC -!- SIMILARITY: Belongs to the CRISPR-associated protein Cas9/Csn1 CC family. Subtype II/Nmemi (II-A) subfamily. {ECO:0000305}. CC -!- SIMILARITY: Contains 1 HNH Cas9-type domain. {ECO:0000255|HAMAP- CC Rule:MF_01480}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AL596173; CAC97970.1; -; Genomic_DNA. DR PIR; AB1775; AB1775. DR RefSeq; NP_472073.1; NC_003212.1. DR RefSeq; WP_010991369.1; NC_003212.1. DR STRING; 272626.lin2744; -. DR KEGG; lin:lin2744; -. DR PATRIC; 20302423; VBILisInn102668_2817. DR GenoList; LIN2744; -. DR HOGENOM; HOG000071789; -. DR KO; K09952; -. DR OMA; IPHQIHL; -. DR OrthoDB; EOG6MH57S; -. DR Proteomes; UP000002513; Chromosome. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0004519; F:endonuclease activity; IEA:UniProtKB-HAMAP. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-HAMAP. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0051607; P:defense response to virus; IEA:UniProtKB-HAMAP. DR GO; GO:0043571; P:maintenance of CRISPR repeat elements; IEA:UniProtKB-HAMAP. DR HAMAP; MF_01480; Cas9; 1. DR InterPro; IPR028629; Cas9/Csn1_fam. DR InterPro; IPR025978; CRISPR-rel_HNH_dom. DR InterPro; IPR003615; HNH_nuc. DR Pfam; PF13395; HNH_4; 1. DR SMART; SM00507; HNHc; 1. DR TIGRFAMs; TIGR01865; cas_Csn1; 1. PE 1: Evidence at protein level; KW Antiviral defense; Complete proteome; DNA-binding; Endonuclease; KW Hydrolase; Magnesium; Nuclease; RNA-binding. FT CHAIN 1 1334 CRISPR-associated endonuclease Cas9. FT /FTId=PRO_0000421685. FT DOMAIN 824 874 HNH Cas9-type. {ECO:0000255|HAMAP- FT Rule:MF_01480}. SQ SEQUENCE 1334 AA; 154807 MW; 95557D51A4B7185E CRC64; MKKPYTIGLD IGTNSVGWAV LTDQYDLVKR KMKIAGDSEK KQIKKNFWGV RLFDEGQTAA DRRMARTARR RIERRRNRIS YLQGIFAEEM SKTDANFFCR LSDSFYVDNE KRNSRHPFFA TIEEEVEYHK NYPTIYHLRE ELVNSSEKAD LRLVYLALAH IIKYRGNFLI EGALDTQNTS VDGIYKQFIQ TYNQVFASGI EDGSLKKLED NKDVAKILVE KVTRKEKLER ILKLYPGEKS AGMFAQFISL IVGSKGNFQK PFDLIEKSDI ECAKDSYEED LESLLALIGD EYAELFVAAK NAYSAVVLSS IITVAETETN AKLSASMIER FDTHEEDLGE LKAFIKLHLP KHYEEIFSNT EKHGYAGYID GKTKQADFYK YMKMTLENIE GADYFIAKIE KENFLRKQRT FDNGAIPHQL HLEELEAILH QQAKYYPFLK ENYDKIKSLV TFRIPYFVGP LANGQSEFAW LTRKADGEIR PWNIEEKVDF GKSAVDFIEK MTNKDTYLPK ENVLPKHSLC YQKYLVYNEL TKVRYINDQG KTSYFSGQEK EQIFNDLFKQ KRKVKKKDLE LFLRNMSHVE SPTIEGLEDS FNSSYSTYHD LLKVGIKQEI LDNPVNTEML ENIVKILTVF EDKRMIKEQL QQFSDVLDGV VLKKLERRHY TGWGRLSAKL LMGIRDKQSH LTILDYLMND DGLNRNLMQL INDSNLSFKS IIEKEQVTTA DKDIQSIVAD LAGSPAIKKG ILQSLKIVDE LVSVMGYPPQ TIVVEMAREN QTTGKGKNNS RPRYKSLEKA IKEFGSQILK EHPTDNQELR NNRLYLYYLQ NGKDMYTGQD LDIHNLSNYD IDHIVPQSFI TDNSIDNLVL TSSAGNREKG DDVPPLEIVR KRKVFWEKLY QGNLMSKRKF DYLTKAERGG LTEADKARFI HRQLVETRQI TKNVANILHQ RFNYEKDDHG NTMKQVRIVT LKSALVSQFR KQFQLYKVRD VNDYHHAHDA YLNGVVANTL LKVYPQLEPE FVYGDYHQFD WFKANKATAK KQFYTNIMLF FAQKDRIIDE NGEILWDKKY LDTVKKVMSY RQMNIVKKTE IQKGEFSKAT IKPKGNSSKL IPRKTNWDPM KYGGLDSPNM AYAVVIEYAK GKNKLVFEKK IIRVTIMERK AFEKDEKAFL EEQGYRQPKV LAKLPKYTLY ECEEGRRRML ASANEAQKGN QQVLPNHLVT LLHHAANCEV SDGKSLDYIE SNREMFAELL AHVSEFAKRY TLAEANLNKI NQLFEQNKEG DIKAIAQSFV DLMAFNAMGA PASFKFFETT IERKRYNNLK ELLNSTIIYQ SITGLYESRK RLDD //