ID   Q90K99_9HIV1            Unreviewed;       400 AA.
AC   Q90K99;
DT   01-DEC-2001, integrated into UniProtKB/TrEMBL.
DT   01-DEC-2001, sequence version 1.
DT   01-JUL-2008, entry version 40.
DE   Pol polyprotein (Fragment).
GN   Name=pol;
OS   Human immunodeficiency virus 1.
OC   Viruses; Retro-transcribing viruses; Retroviridae; Orthoretrovirinae;
OC   Lentivirus; Primate lentivirus group.
OX   NCBI_TaxID=11676;
RN   [1]
RP   NUCLEOTIDE SEQUENCE.
RA   Shafer R., Gonzales M.J., Brun-Vezinet F.;
RT   "Online comparison of HIV-1 drug resistance algorithms identifies
RT   rates and causes of discordant interpretations.";
RL   Antivir. Ther. 6:101-101(2001).
CC   -!- SIMILARITY: Contains 1 peptidase A2 domain.
CC   -!- SIMILARITY: Contains 1 reverse transcriptase domain.
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DR   EMBL; AY030717; AAK35532.1; -; Genomic_RNA.
DR   HSSP; P03369; 1AID.
DR   SMR; Q90K99; 1-130, 100-395.
DR   GO; GO:0004190; F:aspartic-type endopeptidase activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0003964; F:RNA-directed DNA polymerase activity; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR   GO; GO:0006508; P:proteolysis; IEA:InterPro.
DR   GO; GO:0006278; P:RNA-dependent DNA replication; IEA:InterPro.
DR   GO; GO:0032196; P:transposition; IEA:UniProtKB-KW.
DR   InterPro; IPR000477; DNA_pol_RVTase.
DR   InterPro; IPR001969; Pept_Asp_AS.
DR   InterPro; IPR009007; Pept_Aspartc_cat.
DR   InterPro; IPR001995; Peptidase_A2_cat.
DR   InterPro; IPR010661; RVT_thumb.
DR   Gene3D; G3DSA:2.40.70.10; Pept_Aspartc_cat; 1.
DR   Pfam; PF00077; RVP; 1.
DR   Pfam; PF00078; RVT_1; 1.
DR   Pfam; PF06817; RVT_thumb; 1.
DR   PROSITE; PS50175; ASP_PROT_RETROV; 1.
DR   PROSITE; PS00141; ASP_PROTEASE; UNKNOWN_1.
DR   PROSITE; PS50878; RT_POL; 1.
PE   4: Predicted;
FT   NON_TER       1      1
FT   NON_TER     400    400
SQ   SEQUENCE   400 AA;  45581 MW;  6AF4D9EB84170607 CRC64;
     PQITLWQRPL VTIRIGGQLK EALLDTGADD TVLEEMNLPG KWKPKMIGGI GGFIKVRQYD
     QIPIEICGHK AIGTVLVGPT PVNIIGRNLL TQIGCTLNFP ISPIDTVPVK LKPGMDGPRV
     KQWPLTEEKI KALVEICTEM EKEGKISKIG PENPYNTPVF AIKKKNSNRW RKLVDFRELN
     KRTQDFWEVQ LGIPHPAGLK KRKSVTVLDV GDAYFSVPLD EDFRKYTAFT IPSINNETPG
     IRYQYNVLPQ GWKGSPAIFQ SSMTKILEPF RKQNPDIVIY QYVDDLYVGS DLEIGQHRIK
     IEELRQHLLK WGLTTPDQKH QKEPPFLWMG YELHPDKWTV QPIVLPEKDS WTVNDIQKLV
     GKLNWASQIY AGIKVKQLCK LLRGTKALTE VIPLTEEXEL
//