ID ELP5_HUMAN Reviewed; 316 AA. AC Q8TE02; A8K1M5; D3DTN9; Q659B6; Q7Z2T4; Q8TDR9; Q9BUB2; Q9Y2Q4; DT 20-MAR-2007, integrated into UniProtKB/Swiss-Prot. DT 20-MAR-2007, sequence version 2. DT 10-FEB-2021, entry version 131. DE RecName: Full=Elongator complex protein 5 {ECO:0000303|PubMed:22854966}; DE AltName: Full=Dermal papilla-derived protein 6 {ECO:0000303|PubMed:16850183}; DE AltName: Full=S-phase 2 protein; GN Name=ELP5 {ECO:0000303|PubMed:22854966, ECO:0000312|HGNC:HGNC:30617}; GN Synonyms=C17orf81, DERP6 {ECO:0000303|PubMed:16850183}; GN ORFNames=HSPC002, MSTP071; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, AND SUBCELLULAR LOCATION. RX PubMed=16850183; DOI=10.1007/s11033-006-6273-5; RA Yuan J., Tang W., Luo K., Chen X., Gu X., Wan B., Yu L.; RT "Cloning and characterization of the human gene DERP6, which activates RT transcriptional activities of p53."; RL Mol. Biol. Rep. 33:151-158(2006). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND VARIANT LYS-14. RC TISSUE=Hair follicle dermal papilla; RA Ikeda A., Yoshimoto M.; RT "Molecular cloning of a dermal papilla derived gene."; RL Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC TISSUE=Hippocampus; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16625196; DOI=10.1038/nature04689; RA Zody M.C., Garber M., Adams D.J., Sharpe T., Harrow J., Lupski J.R., RA Nicholson C., Searle S.M., Wilming L., Young S.K., Abouelleil A., RA Allen N.R., Bi W., Bloom T., Borowsky M.L., Bugalter B.E., Butler J., RA Chang J.L., Chen C.-K., Cook A., Corum B., Cuomo C.A., de Jong P.J., RA DeCaprio D., Dewar K., FitzGerald M., Gilbert J., Gibson R., Gnerre S., RA Goldstein S., Grafham D.V., Grocock R., Hafez N., Hagopian D.S., Hart E., RA Norman C.H., Humphray S., Jaffe D.B., Jones M., Kamal M., Khodiyar V.K., RA LaButti K., Laird G., Lehoczky J., Liu X., Lokyitsang T., Loveland J., RA Lui A., Macdonald P., Major J.E., Matthews L., Mauceli E., McCarroll S.A., RA Mihalev A.H., Mudge J., Nguyen C., Nicol R., O'Leary S.B., Osoegawa K., RA Schwartz D.C., Shaw-Smith C., Stankiewicz P., Steward C., Swarbreck D., RA Venkataraman V., Whittaker C.A., Yang X., Zimmer A.R., Bradley A., RA Hubbard T., Birren B.W., Rogers J., Lander E.S., Nusbaum C.; RT "DNA sequence of human chromosome 17 and analysis of rearrangement in the RT human lineage."; RL Nature 440:1045-1049(2006). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), AND VARIANT TYR-303. RC TISSUE=Placenta; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 10-316 (ISOFORM 3). RC TISSUE=Umbilical cord blood; RX PubMed=11042152; DOI=10.1101/gr.140200; RA Zhang Q.-H., Ye M., Wu X.-Y., Ren S.-X., Zhao M., Zhao C.-J., Fu G., RA Shen Y., Fan H.-Y., Lu G., Zhong M., Xu X.-R., Han Z.-G., Zhang J.-W., RA Tao J., Huang Q.-H., Zhou J., Hu G.-X., Gu J., Chen S.-J., Chen Z.; RT "Cloning and functional analysis of cDNAs with open reading frames for 300 RT previously undefined genes expressed in CD34+ hematopoietic stem/progenitor RT cells."; RL Genome Res. 10:1546-1560(2000). RN [8] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 24-316 (ISOFORM 2). RC TISSUE=Aorta; RA Zhao B., Xu Y.Y., Liu Y.Q., Wang X.Y., Liu B., Sheng H., Ye J., Song L., RA Gao Y., Zhang C.L., Zhang J., Gao R.L., Wu Q.Y., Hui R.T.; RL Submitted (JUN-1999) to the EMBL/GenBank/DDBJ databases. RN [9] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 149-316 (ISOFORM 4). RC TISSUE=Amygdala; RX PubMed=17974005; DOI=10.1186/1471-2164-8-399; RA Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., RA Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., RA Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., RA Wiemann S., Schupp I.; RT "The full-ORF clone resource of the German cDNA consortium."; RL BMC Genomics 8:399-399(2007). RN [10] RP IDENTIFICATION IN THE RNA POLYMERASE II ELONGATOR COMPLEX, FUNCTION, RP SUBCELLULAR LOCATION, AND IDENTIFICATION BY MASS SPECTROMETRY. RX PubMed=22854966; DOI=10.1074/jbc.m112.402727; RA Close P., Gillard M., Ladang A., Jiang Z., Papuga J., Hawkes N., Nguyen L., RA Chapelle J.P., Bouillenne F., Svejstrup J., Fillet M., Chariot A.; RT "DERP6 (ELP5) and C3ORF75 (ELP6) regulate tumorigenicity and migration of RT melanoma cells as subunits of Elongator."; RL J. Biol. Chem. 287:32535-32545(2012). RN [11] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-268, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [12] RP REVIEW. RX PubMed=29332244; DOI=10.1007/s00018-018-2747-6; RA Dalwadi U., Yip C.K.; RT "Structural insights into the function of Elongator."; RL Cell. Mol. Life Sci. 75:1613-1622(2018). CC -!- FUNCTION: Component of the RNA polymerase II elongator complex, a CC multiprotein complex associated with the RNA polymerase II (Pol II) CC holoenzyme, and which is involved in transcriptional elongation CC (PubMed:22854966). The elongator complex catalyzes formation of CC carboxymethyluridine in the wobble base at position 34 in tRNAs CC (PubMed:29332244). Involved in cell migration (By similarity). May be CC involved in TP53-mediated transcriptional regulation (PubMed:16850183). CC {ECO:0000250|UniProtKB:Q99L85, ECO:0000269|PubMed:16850183, CC ECO:0000269|PubMed:22854966, ECO:0000303|PubMed:29332244}. CC -!- PATHWAY: tRNA modification; 5-methoxycarbonylmethyl-2-thiouridine-tRNA CC biosynthesis. {ECO:0000303|PubMed:29332244}. CC -!- SUBUNIT: Component of the RNA polymerase II elongator complex CC (Elongator), which consists of ELP1, STIP1/ELP2, ELP3, ELP4, ELP5 and CC ELP6; in the complex, is required for optimal binding of ELP3 to ELP4. CC {ECO:0000269|PubMed:22854966}. CC -!- INTERACTION: CC Q8TE02; P54253: ATXN1; NbExp=8; IntAct=EBI-946189, EBI-930964; CC Q8TE02; Q96EB1: ELP4; NbExp=4; IntAct=EBI-946189, EBI-3951755; CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000269|PubMed:22854966}. Cytoplasm CC {ECO:0000269|PubMed:16850183, ECO:0000269|PubMed:22854966}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=4; CC Name=1; CC IsoId=Q8TE02-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8TE02-2; Sequence=VSP_023923; CC Name=3; CC IsoId=Q8TE02-3; Sequence=VSP_023920, VSP_023921; CC Name=4; CC IsoId=Q8TE02-4; Sequence=VSP_023922; CC -!- TISSUE SPECIFICITY: Ubiquitously expressed with high levels in heart, CC brain, liver, skeletal muscle and testis. CC -!- SIMILARITY: Belongs to the ELP5 family. {ECO:0000305}. CC -!- CAUTION: It is uncertain whether Met-1 or Met-17 is the initiator. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD20964.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC Sequence=AAQ13591.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF087868; AAM10496.1; -; mRNA. DR EMBL; AB013910; BAB87800.1; -; mRNA. DR EMBL; AK289940; BAF82629.1; -; mRNA. DR EMBL; AC003688; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471108; EAW90230.1; -; Genomic_DNA. DR EMBL; CH471108; EAW90231.1; -; Genomic_DNA. DR EMBL; BC002762; AAH02762.2; -; mRNA. DR EMBL; AF070658; AAD20964.1; ALT_INIT; mRNA. DR EMBL; AF163262; AAQ13591.1; ALT_INIT; mRNA. DR EMBL; AL713741; CAH56280.1; -; mRNA. DR CCDS; CCDS11094.1; -. [Q8TE02-1] DR CCDS; CCDS11095.1; -. [Q8TE02-2] DR RefSeq; NP_056177.3; NM_015362.4. [Q8TE02-1] DR RefSeq; NP_981958.1; NM_203413.2. [Q8TE02-2] DR RefSeq; NP_981959.1; NM_203414.2. [Q8TE02-1] DR RefSeq; NP_981960.1; NM_203415.2. [Q8TE02-1] DR RefSeq; XP_011522081.1; XM_011523779.2. [Q8TE02-1] DR BioGRID; 117122; 14. DR ComplexPortal; CPX-1949; Elongator holoenzyme complex. DR CORUM; Q8TE02; -. DR IntAct; Q8TE02; 7. DR STRING; 9606.ENSP00000379869; -. DR iPTMnet; Q8TE02; -. DR PhosphoSitePlus; Q8TE02; -. DR BioMuta; ELP5; -. DR DMDM; 134034093; -. DR EPD; Q8TE02; -. DR jPOST; Q8TE02; -. DR MassIVE; Q8TE02; -. DR MaxQB; Q8TE02; -. DR PaxDb; Q8TE02; -. DR PeptideAtlas; Q8TE02; -. DR PRIDE; Q8TE02; -. DR ProteomicsDB; 74381; -. [Q8TE02-1] DR ProteomicsDB; 74382; -. [Q8TE02-2] DR ProteomicsDB; 74383; -. [Q8TE02-3] DR ProteomicsDB; 74384; -. [Q8TE02-4] DR Antibodypedia; 11862; 80 antibodies. DR DNASU; 23587; -. DR Ensembl; ENST00000354429; ENSP00000346412; ENSG00000170291. [Q8TE02-1] DR Ensembl; ENST00000356683; ENSP00000349111; ENSG00000170291. [Q8TE02-2] DR Ensembl; ENST00000396627; ENSP00000379868; ENSG00000170291. [Q8TE02-1] DR Ensembl; ENST00000396628; ENSP00000379869; ENSG00000170291. [Q8TE02-1] DR Ensembl; ENST00000573657; ENSP00000459633; ENSG00000170291. [Q8TE02-3] DR Ensembl; ENST00000574255; ENSP00000461489; ENSG00000170291. [Q8TE02-3] DR Ensembl; ENST00000574993; ENSP00000459835; ENSG00000170291. [Q8TE02-2] DR Ensembl; ENST00000671820; ENSP00000500470; ENSG00000288485. [Q8TE02-1] DR Ensembl; ENST00000671829; ENSP00000500574; ENSG00000288485. [Q8TE02-1] DR Ensembl; ENST00000672545; ENSP00000500755; ENSG00000288485. [Q8TE02-2] DR Ensembl; ENST00000673019; ENSP00000500212; ENSG00000288485. [Q8TE02-2] DR Ensembl; ENST00000673277; ENSP00000499930; ENSG00000288485. [Q8TE02-3] DR Ensembl; ENST00000673309; ENSP00000500054; ENSG00000288485. [Q8TE02-3] DR Ensembl; ENST00000673570; ENSP00000500315; ENSG00000288485. [Q8TE02-1] DR GeneID; 23587; -. DR KEGG; hsa:23587; -. DR UCSC; uc002gfg.2; human. [Q8TE02-1] DR CTD; 23587; -. DR DisGeNET; 23587; -. DR GeneCards; ELP5; -. DR HGNC; HGNC:30617; ELP5. DR HPA; ENSG00000170291; Tissue enhanced (testis). DR MIM; 615019; gene. DR neXtProt; NX_Q8TE02; -. DR OpenTargets; ENSG00000170291; -. DR PharmGKB; PA143485405; -. DR VEuPathDB; HostDB:ENSG00000170291.14; -. DR eggNOG; ENOG502QQ2R; Eukaryota. DR GeneTree; ENSGT00390000009210; -. DR HOGENOM; CLU_076374_0_0_1; -. DR InParanoid; Q8TE02; -. DR OMA; FRDPLSW; -. DR OrthoDB; 805928at2759; -. DR PhylomeDB; Q8TE02; -. DR TreeFam; TF314636; -. DR PathwayCommons; Q8TE02; -. DR Reactome; R-HSA-3214847; HATs acetylate histones. DR UniPathway; UPA00988; -. DR BioGRID-ORCS; 23587; 581 hits in 897 CRISPR screens. DR ChiTaRS; ELP5; human. DR GeneWiki; C17orf81; -. DR GenomeRNAi; 23587; -. DR Pharos; Q8TE02; Tbio. DR PRO; PR:Q8TE02; -. DR Proteomes; UP000005640; Chromosome 17. DR RNAct; Q8TE02; protein. DR Bgee; ENSG00000170291; Expressed in right testis and 227 other tissues. DR ExpressionAtlas; Q8TE02; baseline and differential. DR Genevisible; Q8TE02; HS. DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB. DR GO; GO:0005829; C:cytosol; IDA:HPA. DR GO; GO:0033588; C:Elongator holoenzyme complex; IDA:UniProtKB. DR GO; GO:0005654; C:nucleoplasm; IDA:HPA. DR GO; GO:0005634; C:nucleus; IDA:UniProtKB. DR GO; GO:0030335; P:positive regulation of cell migration; ISS:UniProtKB. DR GO; GO:0002098; P:tRNA wobble uridine modification; IEA:InterPro. DR InterPro; IPR019519; Elp5. DR PANTHER; PTHR15641; PTHR15641; 1. DR Pfam; PF10483; Elong_Iki1; 2. PE 1: Evidence at protein level; KW Alternative splicing; Cytoplasm; Nucleus; Phosphoprotein; KW Reference proteome; Transcription; Transcription regulation; KW tRNA processing. FT CHAIN 1..316 FT /note="Elongator complex protein 5" FT /id="PRO_0000280817" FT MOD_RES 268 FT /note="Phosphoserine" FT /evidence="ECO:0000244|PubMed:23186163" FT VAR_SEQ 154..179 FT /note="DSSSVGKVSVLGLLHEELHGPGPVGA -> ETPPSLFPLIHLPLPRSVPLFL FT STLE (in isoform 3)" FT /evidence="ECO:0000303|PubMed:11042152" FT /id="VSP_023920" FT VAR_SEQ 180..316 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:11042152" FT /id="VSP_023921" FT VAR_SEQ 246 FT /note="V -> VHPLYLQV (in isoform 4)" FT /evidence="ECO:0000303|PubMed:17974005" FT /id="VSP_023922" FT VAR_SEQ 247..316 FT /note="DPTTHLTFNLHLSKKEREARDSLILPFQFSSEKQQALLRPRPGQATSHIFYE FT PDAYDDLDQEDPDDDLDI -> SKNAKARTRKCSLVSGHGRENKSCRGWGWGQGF (in FT isoform 2)" FT /evidence="ECO:0000303|PubMed:14702039, ECO:0000303|Ref.8" FT /id="VSP_023923" FT VARIANT 14 FT /note="E -> K (in dbSNP:rs2521988)" FT /evidence="ECO:0000269|Ref.2" FT /id="VAR_053882" FT VARIANT 303 FT /note="D -> Y (in dbSNP:rs17849664)" FT /evidence="ECO:0000269|PubMed:15489334" FT /id="VAR_031205" FT CONFLICT 151 FT /note="C -> R (in Ref. 1; AAM10496)" FT /evidence="ECO:0000305" FT CONFLICT 175 FT /note="G -> S (in Ref. 1; AAM10496)" FT /evidence="ECO:0000305" FT CONFLICT 181 FT /note="S -> N (in Ref. 1; AAM10496)" FT /evidence="ECO:0000305" FT CONFLICT 228 FT /note="Q -> K (in Ref. 1; AAM10496)" FT /evidence="ECO:0000305" FT CONFLICT 245 FT /note="P -> R (in Ref. 1; AAM10496)" FT /evidence="ECO:0000305" FT CONFLICT Q8TE02-2:263 FT /note="H -> Q (in Ref. 8; AAQ13591)" FT /evidence="ECO:0000305" SQ SEQUENCE 316 AA; 34841 MW; C96F86C6B99CE7CE CRC64; MTPSEGARAG TGRELEMLDS LLALGGLVLL RDSVEWEGRS LLKALVKKSA LCGEQVHILG CEVSEEEFRE GFDSDINNRL VYHDFFRDPL NWSKTEEAFP GGPLGALRAM CKRTDPVPVT IALDSLSWLL LRLPCTTLCQ VLHAVSHQDS CPGDSSSVGK VSVLGLLHEE LHGPGPVGAL SSLAQTEVTL GGTMGQASAH ILCRRPRQRP TDQTQWFSIL PDFSLDLQEG PSVESQPYSD PHIPPVDPTT HLTFNLHLSK KEREARDSLI LPFQFSSEKQ QALLRPRPGQ ATSHIFYEPD AYDDLDQEDP DDDLDI //