ID EFR3A_MOUSE Reviewed; 819 AA. AC Q8BG67; Q6ZQI4; Q8BXQ7; Q8C0Q0; Q922I2; DT 09-JAN-2007, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 08-APR-2008, entry version 40. DE Protein EFR3 homolog A (Protein EFR3-like). GN Name=Efr3a; Synonyms=Kiaa0143; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; OC Muroidea; Muridae; Murinae; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SUBCELLULAR LOCATION, TISSUE RP SPECIFICITY, AND INDUCTION. RC STRAIN=C57BL/6; TISSUE=Brain; RX PubMed=15363888; DOI=10.1016/j.molbrainres.2004.06.022; RA Munemoto Y., Houtani T., Kase M., Sakuma S., Baba K., Yamashita T., RA Sugimoto T.; RT "Mouse homolog of KIAA0143 protein: hearing deficit induces specific RT changes of expression in auditory brainstem neurons."; RL Brain Res. Mol. Brain Res. 128:131-140(2004). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Embryonic tail; RX MEDLINE=22977043; PubMed=14621295; DOI=10.1093/dnares/10.4.167; RA Okazaki N., Kikuno R., Ohara R., Inamoto S., Koseki H., Hiraoka S., RA Saga Y., Nagase T., Ohara O., Koga H.; RT "Prediction of the coding sequences of mouse homologues of KIAA gene: RT III. The complete nucleotide sequences of 500 mouse KIAA-homologous RT cDNAs identified by screening of terminal sequences of cDNA clones RT randomly sampled from size-fractionated libraries."; RL DNA Res. 10:167-180(2003). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2). RC STRAIN=C57BL/6J; RC TISSUE=Brain cortex, Olfactory bulb, Retina, and Testis; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., RA Davis M.J., Wilming L.G., Aidinis V., Allen J.E., RA Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., RA Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., RA Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., RA Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., RA di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., RA Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., RA Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., RA Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., RA Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., RA Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., RA Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., RA Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., RA Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., RA Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., RA Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., RA Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., RA Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., RA Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., RA Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., RA Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., RA Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., RA Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., RA Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., RA Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., RA Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., RA Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., RA Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., RA Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., RA Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., RA Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=Czech II; TISSUE=Mammary gland; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA RT project: the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). CC -!- SUBCELLULAR LOCATION: Cell membrane. Note=Localizes to plasma CC membrane. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q8BG67-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8BG67-2; Sequence=VSP_022219; CC Note=No experimental confirmation available; CC -!- TISSUE SPECIFICITY: Expressed in neurons of the superior olivary CC complex of the auditory brainstem. Also expressed at lower levels CC in the cochlear nucleus, the lateral leminiscal nuclei and the CC inferior collicus. CC -!- INDUCTION: Expression is reduced in animals with impaired hearing. CC -!- SIMILARITY: Belongs to the EFR3 family. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB158474; BAD52086.1; -; mRNA. DR EMBL; AK129065; BAC97875.1; ALT_INIT; mRNA. DR EMBL; AK030074; BAC26768.1; -; mRNA. DR EMBL; AK032461; BAC27881.1; -; mRNA. DR EMBL; AK044000; BAC31732.1; -; mRNA. DR EMBL; AK044475; BAC31942.1; -; mRNA. DR EMBL; AK161250; BAE36269.1; -; mRNA. DR EMBL; BC007482; AAH07482.1; -; mRNA. DR RefSeq; NP_598527.2; -. DR UniGene; Mm.260647; -. DR IntAct; Q8BG67; -. DR Ensembl; ENSMUSG00000015002; Mus musculus. DR GeneID; 76740; -. DR KEGG; mmu:76740; -. DR MGI; MGI:1923990; C920006C10Rik. DR ArrayExpress; Q8BG67; -. DR CleanEx; MM_EFR3A; -. DR GO; GO:0005622; C:intracellular; IDA:MGI. DR GO; GO:0005886; C:plasma membrane; IDA:MGI. PE 2: Evidence at transcript level; KW Alternative splicing; Membrane. FT CHAIN 1 819 Protein EFR3 homolog A. FT /FTId=PRO_0000270766. FT VAR_SEQ 786 819 PPPSPSGTLTVTSGHTQYQSVPVYEMKFPDLCVY -> QRR FT ESMLYKTEAEPCYTQPMAWGQRRIKEKYKAVVK (in FT isoform 2). FT /FTId=VSP_022219. FT CONFLICT 70 70 R -> H (in Ref. 3; BAC31942). FT CONFLICT 364 364 V -> I (in Ref. 4; AAH07482). FT CONFLICT 585 585 D -> G (in Ref. 3; BAC31942). FT CONFLICT 693 693 R -> T (in Ref. 3; BAC26768). SQ SEQUENCE 819 AA; 92613 MW; BF3BCD87C508CD1A CRC64; MPTRVCCCCS ALRPRYKRLV DNIFPEDPKD GLVKADMEKL TFYAVSAPEK LDRIGAYLAE RLSRDVVRHR SGYVLIAMEA LDQLLMACHS QSIKPFVESF LHMVAKLLES GEPKLQVLGT NSFVKFANIE EDTPSYHRRY DFFVSRFSAM CHSCHSDPEI RTEIRIAGIR GIQGVVRKTV NDELRATIWE PQHMDKIVPS LLFNMQKIEE VDSRLGPPSS PSAADKEENP AVLAESCFRE LLGRATFGNM NNAVRPVFAH LDHHKLWDPN EFAVHCFKII MYSIQAQYSH HVIQEILGHL DARRKDSPRV RAGIIQVLLE AVAIAAKGSI GPTVLEVFNT LLKHLRLSVE LEANDSQKGS VGSVTVSSKD NDEKIVQNAV IQTIGFFGSN LPDYQRSEIM MFIMGKVPVF GTSTHTLDIS QLGDLGTRRI QIMLLRSLLM VTSGYKAKTI VTALPGSFLD PLLSPSLMED YELRQLVLEV MHNLMDRHDN RAKLRGIRII PDVADLKIKR EKICRQDTSF MKKNGQQLYR HIYLGCKEED NVQKNYELLY TSLALITIEL ANEEVVIDLI RLAIALQDSA IINEDNLSMF HRCGIMALVA AYLNFVSQMI AVPAFCQHVS KVIETRTMEA PYFLPEHIFR DKCMLPKSLE KHDKNLYFLT NKIAESLGGS GYSVERLTVP YVPQVTDEDR LSRRKSIVDT VSIQVDILSN SVPSDDVVSN TEEITFEALK KAIDTNGMEE QEKEKRRLVI EKFQKAPFEE IAAQCESKAN LLHDRLAQIL ELTIRPPPSP SGTLTVTSGH TQYQSVPVYE MKFPDLCVY //