ID UBR3_HUMAN Reviewed; 1888 AA. AC Q6ZT12; B4DZR7; Q2KHN5; Q6ZR55; Q6ZSC2; Q8IVE7; Q8ND96; DT 20-FEB-2007, integrated into UniProtKB/Swiss-Prot. DT 15-JAN-2008, sequence version 2. DT 10-FEB-2021, entry version 151. DE RecName: Full=E3 ubiquitin-protein ligase UBR3; DE EC=2.3.2.27; DE AltName: Full=N-recognin-3; DE AltName: Full=RING-type E3 ubiquitin transferase UBR3; DE AltName: Full=Ubiquitin-protein ligase E3-alpha-3; DE AltName: Full=Ubiquitin-protein ligase E3-alpha-III; DE AltName: Full=Zinc finger protein 650; GN Name=UBR3; Synonyms=KIAA2024, ZNF650; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). RC TISSUE=Brain; RA Nagase T., Kikuno R., Ohara O.; RT "The nucleotide sequence of a long cDNA clone isolated from human."; RL Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), NUCLEOTIDE SEQUENCE RP [LARGE SCALE MRNA] OF 1092-1888 (ISOFORM 1), AND NUCLEOTIDE SEQUENCE [LARGE RP SCALE MRNA] OF 1330-1888 (ISOFORM 4). RC TISSUE=Brain, Testis, Tongue, and Trachea; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=15815621; DOI=10.1038/nature03466; RA Hillier L.W., Graves T.A., Fulton R.S., Fulton L.A., Pepin K.H., Minx P., RA Wagner-McPherson C., Layman D., Wylie K., Sekhon M., Becker M.C., RA Fewell G.A., Delehaunty K.D., Miner T.L., Nash W.E., Kremitzki C., Oddy L., RA Du H., Sun H., Bradshaw-Cordum H., Ali J., Carter J., Cordes M., Harris A., RA Isak A., van Brunt A., Nguyen C., Du F., Courtney L., Kalicki J., RA Ozersky P., Abbott S., Armstrong J., Belter E.A., Caruso L., Cedroni M., RA Cotton M., Davidson T., Desai A., Elliott G., Erb T., Fronick C., Gaige T., RA Haakenson W., Haglund K., Holmes A., Harkins R., Kim K., Kruchowski S.S., RA Strong C.M., Grewal N., Goyea E., Hou S., Levy A., Martinka S., Mead K., RA McLellan M.D., Meyer R., Randall-Maher J., Tomlinson C., RA Dauphin-Kohlberg S., Kozlowicz-Reilly A., Shah N., Swearengen-Shahid S., RA Snider J., Strong J.T., Thompson J., Yoakum M., Leonard S., Pearman C., RA Trani L., Radionenko M., Waligorski J.E., Wang C., Rock S.M., RA Tin-Wollam A.-M., Maupin R., Latreille P., Wendl M.C., Yang S.-P., Pohl C., RA Wallis J.W., Spieth J., Bieri T.A., Berkowicz N., Nelson J.O., Osborne J., RA Ding L., Meyer R., Sabo A., Shotland Y., Sinha P., Wohldmann P.E., RA Cook L.L., Hickenbotham M.T., Eldred J., Williams D., Jones T.A., She X., RA Ciccarelli F.D., Izaurralde E., Taylor J., Schmutz J., Myers R.M., RA Cox D.R., Huang X., McPherson J.D., Mardis E.R., Clifton S.W., Warren W.C., RA Chinwalla A.T., Eddy S.R., Marra M.A., Ovcharenko I., Furey T.S., RA Miller W., Eichler E.E., Bork P., Suyama M., Torrents D., Waterston R.H., RA Wilson R.K.; RT "Generation and annotation of the DNA sequences of human chromosomes 2 and RT 4."; RL Nature 434:724-731(2005). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1432-1888 (ISOFORMS 1/2). RC TISSUE=Testis; RX PubMed=17974005; DOI=10.1186/1471-2164-8-399; RA Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., RA Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., RA Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., RA Wiemann S., Schupp I.; RT "The full-ORF clone resource of the German cDNA consortium."; RL BMC Genomics 8:399-399(2007). RN [5] RP FUNCTION. RX PubMed=27331610; DOI=10.7554/elife.15258; RA Li T., Giagtzoglou N., Eberl D.F., Jaiswal S.N., Cai T., Godt D., RA Groves A.K., Bellen H.J.; RT "The E3 ligase Ubr3 regulates Usher syndrome and MYH9 disorder proteins in RT the auditory organs of Drosophila and mammals."; RL Elife 5:E15258-E15258(2016). CC -!- FUNCTION: E3 ubiquitin-protein ligase which is a component of the N-end CC rule pathway (By similarity). Does not bind to proteins bearing CC specific N-terminal residues that are destabilizing according to the N- CC end rule, leading to their ubiquitination and subsequent degradation CC (By similarity). May play a role in Shh signaling by mediating the CC ubiquitination of Kif7 (By similarity). May be important for MYH9 CC function in certain tissues, possibly by regulating the ubiquitination CC of MYH9 and consequently affecting its interaction with MYO7A CC (PubMed:27331610). {ECO:0000250|UniProtKB:Q5U430, CC ECO:0000269|PubMed:27331610}. CC -!- CATALYTIC ACTIVITY: CC Reaction=S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + CC [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L- CC cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.; CC EC=2.3.2.27; CC -!- PATHWAY: Protein modification; protein ubiquitination. CC -!- SUBUNIT: Interacts with UBE2A and UBE2B. CC {ECO:0000250|UniProtKB:Q5U430}. CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane CC protein {ECO:0000305}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=4; CC Name=1; CC IsoId=Q6ZT12-1; Sequence=Displayed; CC Name=2; CC IsoId=Q6ZT12-2; Sequence=VSP_030354, VSP_023142; CC Name=3; CC IsoId=Q6ZT12-3; Sequence=VSP_023141; CC Name=4; CC IsoId=Q6ZT12-4; Sequence=VSP_036405; CC -!- SIMILARITY: Belongs to the UBR1 family. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAC23120.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAC86783.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAC87032.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAG64179.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=CAD38857.1; Type=Erroneous termination; Note=Truncated C-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB095944; BAC23120.1; ALT_INIT; mRNA. DR EMBL; AK126998; BAC86783.1; ALT_INIT; mRNA. DR EMBL; AK127553; BAC87032.1; ALT_INIT; mRNA. DR EMBL; AK128490; BAC87462.1; -; mRNA. DR EMBL; AK303062; BAG64179.1; ALT_INIT; mRNA. DR EMBL; AC009967; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AC079151; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AC092641; AAY14890.1; -; Genomic_DNA. DR EMBL; AL834144; CAD38857.1; ALT_SEQ; mRNA. DR CCDS; CCDS2238.2; -. [Q6ZT12-1] DR RefSeq; NP_742067.3; NM_172070.3. [Q6ZT12-1] DR SMR; Q6ZT12; -. DR BioGRID; 126237; 55. DR IntAct; Q6ZT12; 31. DR STRING; 9606.ENSP00000396068; -. DR iPTMnet; Q6ZT12; -. DR PhosphoSitePlus; Q6ZT12; -. DR BioMuta; UBR3; -. DR DMDM; 166214992; -. DR EPD; Q6ZT12; -. DR jPOST; Q6ZT12; -. DR MassIVE; Q6ZT12; -. DR MaxQB; Q6ZT12; -. DR PaxDb; Q6ZT12; -. DR PeptideAtlas; Q6ZT12; -. DR PRIDE; Q6ZT12; -. DR ProteomicsDB; 68252; -. [Q6ZT12-1] DR ProteomicsDB; 68253; -. [Q6ZT12-2] DR ProteomicsDB; 68254; -. [Q6ZT12-3] DR ProteomicsDB; 68255; -. [Q6ZT12-4] DR Antibodypedia; 33822; 39 antibodies. DR Ensembl; ENST00000272793; ENSP00000272793; ENSG00000144357. [Q6ZT12-1] DR Ensembl; ENST00000418381; ENSP00000396068; ENSG00000144357. [Q6ZT12-1] DR GeneID; 130507; -. DR KEGG; hsa:130507; -. DR UCSC; uc010zdi.3; human. [Q6ZT12-1] DR CTD; 130507; -. DR DisGeNET; 130507; -. DR GeneCards; UBR3; -. DR HGNC; HGNC:30467; UBR3. DR HPA; ENSG00000144357; Tissue enhanced (skeletal). DR MIM; 613831; gene. DR neXtProt; NX_Q6ZT12; -. DR OpenTargets; ENSG00000144357; -. DR PharmGKB; PA162407919; -. DR VEuPathDB; HostDB:ENSG00000144357.16; -. DR eggNOG; KOG1139; Eukaryota. DR GeneTree; ENSGT00950000183075; -. DR HOGENOM; CLU_000651_2_1_1; -. DR InParanoid; Q6ZT12; -. DR OMA; TLTDFEC; -. DR OrthoDB; 81415at2759; -. DR PhylomeDB; Q6ZT12; -. DR TreeFam; TF323875; -. DR PathwayCommons; Q6ZT12; -. DR UniPathway; UPA00143; -. DR BioGRID-ORCS; 130507; 6 hits in 877 CRISPR screens. DR ChiTaRS; UBR3; human. DR GenomeRNAi; 130507; -. DR Pharos; Q6ZT12; Tbio. DR PRO; PR:Q6ZT12; -. DR Proteomes; UP000005640; Chromosome 2. DR RNAct; Q6ZT12; protein. DR Bgee; ENSG00000144357; Expressed in biceps brachii and 222 other tissues. DR ExpressionAtlas; Q6ZT12; baseline and differential. DR Genevisible; Q6ZT12; HS. DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW. DR GO; GO:0000151; C:ubiquitin ligase complex; IBA:GO_Central. DR GO; GO:0061630; F:ubiquitin protein ligase activity; IBA:GO_Central. DR GO; GO:0004842; F:ubiquitin-protein transferase activity; ISS:UniProtKB. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0009792; P:embryo development ending in birth or egg hatching; ISS:UniProtKB. DR GO; GO:0001701; P:in utero embryonic development; IEA:Ensembl. DR GO; GO:0042048; P:olfactory behavior; IEA:Ensembl. DR GO; GO:0016567; P:protein ubiquitination; IBA:GO_Central. DR GO; GO:0007608; P:sensory perception of smell; ISS:UniProtKB. DR GO; GO:0001967; P:suckling behavior; ISS:UniProtKB. DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; ISS:UniProtKB. DR GO; GO:0071596; P:ubiquitin-dependent protein catabolic process via the N-end rule pathway; IBA:GO_Central. DR InterPro; IPR044046; E3_ligase_UBR-like_C. DR InterPro; IPR039164; UBR1-like. DR InterPro; IPR003126; Znf_UBR. DR PANTHER; PTHR21497; PTHR21497; 1. DR Pfam; PF18995; PRT6_C; 1. DR Pfam; PF02207; zf-UBR; 1. DR SMART; SM00396; ZnF_UBR1; 1. DR PROSITE; PS51157; ZF_UBR; 1. PE 2: Evidence at transcript level; KW Alternative splicing; Coiled coil; Membrane; Metal-binding; Phosphoprotein; KW Reference proteome; Transferase; Transmembrane; Transmembrane helix; KW Ubl conjugation pathway; Zinc; Zinc-finger. FT CHAIN 1..1888 FT /note="E3 ubiquitin-protein ligase UBR3" FT /id="PRO_0000278184" FT TRANSMEM 761..781 FT /note="Helical" FT /evidence="ECO:0000255" FT TRANSMEM 919..939 FT /note="Helical" FT /evidence="ECO:0000255" FT TRANSMEM 1806..1826 FT /note="Helical" FT /evidence="ECO:0000255" FT ZN_FING 118..189 FT /note="UBR-type" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00508" FT ZN_FING 1306..1364 FT /note="RING-type; degenerate" FT COILED 1168..1199 FT /evidence="ECO:0000255" FT COMPBIAS 2..118 FT /note="Ala-rich" FT COMPBIAS 1766..1808 FT /note="Cys-rich" FT MOD_RES 343 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q5U430" FT MOD_RES 344 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q5U430" FT MOD_RES 1199 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q5U430" FT VAR_SEQ 1..1494 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|Ref.1" FT /id="VSP_023141" FT VAR_SEQ 1..1179 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:14702039" FT /id="VSP_030354" FT VAR_SEQ 1180..1211 FT /note="EERRQKARERQQKLLAEFASRQKSFMETAMDV -> MIASKQRQFTEVFRIM FT SSTFSQSRFLYAAVVT (in isoform 2)" FT /evidence="ECO:0000303|PubMed:14702039" FT /id="VSP_023142" FT VAR_SEQ 1485 FT /note="N -> NFCFIISPFTKSEIILCQYRKSHDKVYPKY (in isoform 4)" FT /evidence="ECO:0000303|PubMed:14702039" FT /id="VSP_036405" FT CONFLICT 1791 FT /note="L -> F (in Ref. 2; BAC87032)" FT /evidence="ECO:0000305" SQ SEQUENCE 1888 AA; 212433 MW; 5F5525B33D2E9153 CRC64; MAAAAAAAVG GQQPSQPELP APGLALDKAA TAAHLKAALS RPDNRAGAEE LQALLERVLS AERPLAAAAG GEDAAAAGGG GGPGAAEEEA LEWCKCLLAG GGGYDEFCAA VRAYDPAALC GLVWTANFVA YRCRTCGISP CMSLCAECFH QGDHTGHDFN MFRSQAGGAC DCGDSNVMRE SGFCKRHQIK SSSNIPCVPK DLLMMSEFVL PRFIFCLIQY LREGYNEPAA DGPSEKDLNK VLQLLEPQIS FLEDLTKMGG AMRSVLTQVL TNQQNYKDLT SGLGENACVK KSHEKYLIAL KSSGLTYPED KLVYGVQEPS AGTSSLAVQG FIGATGTLGQ VDSSDEDDQD GSQGLGKRKR VKLSSGTKDQ SIMDVLKHKS FLEELLFWTI KYEFPQKMVT FLLNMLPDQE YKVAFTKTFV QHYAFIMKTL KKSHESDTMS NRIVHISVQL FSNEELARQV TEECQLLDIM VTVLLYMMES CLIKSELQDE ENSLHVVVNC GEALLKNNTY WPLVSDFINI LSHQSVAKRF LEDHGLLVTW MNFVSFFQGM NLNKRELNEH VEFESQTYYA AFAAELEACA QPMWGLLSHC KVRETQEYTR NVVRYCLEAL QDWFDAINFV DEPAPNQVTF HLPLHRYYAM FLSKAVKCQE LDLDSVLPDQ EMLMKLMIHP LQIQASLAEI HSNMWVRNGL QIKGQAMTYV QSHFCNSMID PDIYLLQVCA SRLDPDYFIS SVFERFKVVD LLTMASQHQN TVLDAEHERS MLEGALTFLV ILLSLRLHLG MSDDEILRAE MVAQLCMNDR THSSLLDLIP ENPNPKSGII PGSYSFESVL SAVADFKAPV FEPGGSMQQG MYTPKAEVWD QEFDPVMVIL RTVYRRDVQS AMDRYTAFLK QSGKFPGNPW PPYKKRTSLH PSYKGLMRLL HCKTLHIVLF TLLYKILMDH QNLSEHVLCM VLYLIELGLE NSAEEESDEE ASVGGPERCH DSWFPGSNLV SNMRHFINYV RVRVPETAPE VKRDSPASTS SDNLGSLQNS GTAQVFSLVA ERRKKFQEII NRSSSEANQV VRPKTSSKWS APGSAPQLTT AILEIKESIL SLLIKLHHKL SGKQNSYYPP WLDDIEILIQ PEIPKYSHGD GITAVERILL KAASQSRMNK RIIEEICRKV TPPVPPKKVT AAEKKTLDKE ERRQKARERQ QKLLAEFASR QKSFMETAMD VDSPENDIPM EITTAEPQVS EAVYDCVICG QSGPSSEDRP TGLVVLLQAS SVLGQCRDNV EPKKLPISEE EQIYPWDTCA AVHDVRLSLL QRYFKDSSCL LAVSIGWEGG VYVQTCGHTL HIDCHKSYME SLRNDQVLQG FSVDKGEFTC PLCRQFANSV LPCYPGSNVE NNPWQRPSNK SIQDLIKEVE ELQGRPGAFP SETNLSKEME SVMKDIKNTT QKKYRDYSKT PGSPDNDFLF MYSVARTNLE LELIHRGGNL CSGGASTAGK RSCLNQLFHV LALHMRLYSI DSEYNPWRKL TQLEEMNPQL GYEEQQPEVP ILYHDVTSLL LIQILMMPQP LRKDHFTCIV KVLFTLLYTQ ALAALSVKCS EEDRSAWKHA GALKKSTCDA EKSYEVLLSF VISELFKGKL YHEEGTQECA MVNPIAWSPE SMEKCLQDFC LPFLRITSLL QHHLFGEDLP SCQEEEEFSV LASCLGLLPT FYQTEHPFIS ASCLDWPVPA FDIITQWCFE IKSFTERHAE QGKALLIQES KWKLPHLLQL PENYNTIFQY YHRKTCSVCT KVPKDPAVCL VCGTFVCLKG LCCKQQSYCE CVLHSQNCGA GTGIFLLINA SVIIIIRGHR FCLWGSVYLD AHGEEDRDLR RGKPLYICKE RYKVLEQQWI SHTFDHINKR WGPHYNGL //