ID   RPOD_STAEQ              Reviewed;         368 AA.
AC   Q5HNY7;
DT   20-DEC-2005, integrated into UniProtKB/Swiss-Prot.
DT   15-FEB-2005, sequence version 1.
DT   05-OCT-2010, entry version 40.
DE   RecName: Full=RNA polymerase sigma factor rpoD;
GN   Name=rpoD; OrderedLocusNames=SERP1127;
OS   Staphylococcus epidermidis (strain ATCC 35984 / RP62A).
OC   Bacteria; Firmicutes; Bacillales; Staphylococcus.
OX   NCBI_TaxID=176279;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX   PubMed=15774886; DOI=10.1128/JB.187.7.2426-2438.2005;
RA   Gill S.R., Fouts D.E., Archer G.L., Mongodin E.F., DeBoy R.T.,
RA   Ravel J., Paulsen I.T., Kolonay J.F., Brinkac L.M., Beanan M.J.,
RA   Dodson R.J., Daugherty S.C., Madupu R., Angiuoli S.V., Durkin A.S.,
RA   Haft D.H., Vamathevan J.J., Khouri H., Utterback T.R., Lee C.,
RA   Dimitrov G., Jiang L., Qin H., Weidman J., Tran K., Kang K.H.,
RA   Hance I.R., Nelson K.E., Fraser C.M.;
RT   "Insights on evolution of virulence and resistance from the complete
RT   genome analysis of an early methicillin-resistant Staphylococcus
RT   aureus strain and a biofilm-producing methicillin-resistant
RT   Staphylococcus epidermidis strain.";
RL   J. Bacteriol. 187:2426-2438(2005).
CC   -!- FUNCTION: Sigma factors are initiation factors that promote the
CC       attachment of RNA polymerase to specific initiation sites and are
CC       then released (By similarity).
CC   -!- SIMILARITY: Belongs to the sigma-70 factor family.
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DR   EMBL; CP000029; AAW54548.1; -; Genomic_DNA.
DR   RefSeq; YP_188703.1; -.
DR   ProteinModelPortal; Q5HNY7; -.
DR   SMR; Q5HNY7; 97-202, 124-368.
DR   STRING; Q5HNY7; -.
DR   EnsemblBacteria; EBSTAT00000041986; EBSTAP00000040529; EBSTAG00000041984.
DR   GeneID; 3242916; -.
DR   GenomeReviews; CP000029_GR; SERP1127.
DR   KEGG; ser:SERP1127; -.
DR   TIGR; SERP1127; -.
DR   eggNOG; COG0568; -.
DR   HOGENOM; HBG745096; -.
DR   OMA; GDEEAKQ; -.
DR   ProtClustDB; PRK09210; -.
DR   BioCyc; SEPI176279:SERP1127-MONOMER; -.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:transcription factor activity; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-dependent; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:transcription initiation; IEA:InterPro.
DR   InterPro; IPR014284; RNA_pol_sigma-70.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR007127; RNA_pol_sigma_70_r1_1.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3_r4.
DR   InterPro; IPR012760; RNA_pol_sigma_RpoD_C.
DR   InterPro; IPR011991; WHTH_trsnscrt_rep_DNA-bd.
DR   Gene3D; G3DSA:1.10.10.10; Wing_hlx_DNA_bd; 2.
DR   Pfam; PF03979; Sigma70_r1_1; 1.
DR   Pfam; PF00140; Sigma70_r1_2; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma_r2; 1.
DR   SUPFAM; SSF88659; Sigma_r3_r4; 2.
DR   TIGRFAMs; TIGR02393; RpoD_Cterm; 1.
DR   TIGRFAMs; TIGR02937; sigma70-ECF; 1.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
KW   Complete proteome; DNA-binding; Sigma factor; Transcription;
KW   Transcription regulation.
FT   CHAIN         1    368       RNA polymerase sigma factor rpoD.
FT                                /FTId=PRO_0000093921.
FT   DNA_BIND    329    348       H-T-H motif (By similarity).
FT   MOTIF       159    172       Polymerase core binding (Potential).
SQ   SEQUENCE   368 AA;  42256 MW;  69AA7FA5A5949F17 CRC64;
     MSDNQVKIKK QTIDPTLTLE DVKKQLIDKG KKEGHLSHEE IAEKLQNFEM DSDQMDDFFD
     QLNDNDITLV NEKDSSDTDD KINPNDLSAP PGVKINDPVR MYLKEIGRVN LLSAQEEIEL
     AKRIEQGDEI AKSRLAEANL RLVVSIAKRY VGRGMLFLDL IQEGNMGLIK AVEKFDFSKG
     FKFSTYATWW IRQAITRAIA DQARTIRIPV HMVETINKLI RVQRQLLQDL GRDPAPEEIG
     EEMDLPPEKV REILKIAQEP VSLETPIGEE DDSHLGDFIE DQEAQSPSDH AAYELLKEQL
     EDVLDTLTDR EENVLRLRFG LDDGRTRTLE EVGKVFGVTR ERIRQIEAKA LRKLRHPSRS
     KRLKDFMD
//