ID ROC3_ORYSJ Reviewed; 882 AA. AC Q336P2; A3C7K9; Q7Y0W0; Q8W3I3; DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot. DT 06-DEC-2005, sequence version 1. DT 20-APR-2010, entry version 38. DE RecName: Full=Homeobox-leucine zipper protein ROC3; DE AltName: Full=Homeodomain transcription factor ROC3; DE AltName: Full=HD-ZIP protein ROC3; DE AltName: Full=Protein RICE OUTERMOST CELL-SPECIFIC 3; DE AltName: Full=GLABRA 2-like homeobox protein 3; GN Name=ROC3; Synonyms=GL2-3; GN OrderedLocusNames=Os10g0575600, LOC_Os10g42490; GN ORFNames=OSJNBa0027L23.2, OsJ_031281; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP clade; OC Ehrhartoideae; Oryzeae; Oryza. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Ito M., Sentoku N., Nishimura A., Hong S.-K., Sato Y., Matsuoka M.; RT "The roles of rice GL2-type homeobox genes in epidermis RT differentiation."; RL Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX MEDLINE=22677351; PubMed=12791992; DOI=10.1126/science.1083523; RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., RA Thompson S., Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., RA Henry D., Oates R., Palmer M., Pries G., Gibson J., Anderson H., RA Paradkar M., Crane L., Dale J., Carver M.B., Wood T., Frisch D., RA Engler F., Soderlund C., Palmer L.E., Teytelman L., Nascimento L., RA De la Bastide M., Spiegel L., Ware D., O'Shaughnessy A., Dike S., RA Dedhia N., Preston R., Huang E., Ferraro K., Kuit K., Miller B., RA Zutavern T., Katzenberger F., Muller S., Balija V., Martienssen R.A., RA Stein L., Minx P., Johnson D., Cordum H., Mardis E., Cheng Z., RA Jiang J., Wilson R., McCombie W.R., Wing R.A., Yuan Q., Ouyang S., RA Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Tsitrin T., RA Overton L., Bera J., Kim M., Jin S., Tallon L., Ciecko A., Pai G., RA Van Aken S., Utterback T., Reidmuller S., Bormann J., Feldblyum T., RA Hsiao J., Zismann V., Blunt S., de Vazeille A.R., Shaffer T., Koo H., RA Suh B., Yang Q., Haas B., Peterson J., Pertea M., Volfovsky N., RA Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., RA Bowers J.E., Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.; RT "In-depth view of structure, activity, and evolution of rice RT chromosome 10."; RL Science 300:1566-1569(2003). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=17210932; DOI=10.1101/gr.5509507; RG The rice annotation project (RAP); RT "Curated genome annotation of Oryza sativa ssp. japonica and RT comparative genome analysis with Arabidopsis thaliana."; RL Genome Res. 17:175-183(2007). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., RA Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., RA Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., RA Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., RA Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., RA Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., RA Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., RA Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., RA Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., RA Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Probable transcription factor (By similarity). CC -!- SUBCELLULAR LOCATION: Nucleus (Probable). CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV CC subfamily. CC -!- SIMILARITY: Contains 1 homeobox DNA-binding domain. CC -!- SIMILARITY: Contains 1 START domain. CC -!- SEQUENCE CAUTION: CC Sequence=AAL67592.1; Type=Erroneous initiation; CC Sequence=BAC77156.1; Type=Erroneous initiation; CC Sequence=EAZ17072.1; Type=Erroneous gene model prediction; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB101646; BAC77156.1; ALT_INIT; mRNA. DR EMBL; AC018929; AAL67592.1; ALT_INIT; Genomic_DNA. DR EMBL; DP000086; ABB48020.1; -; Genomic_DNA. DR EMBL; AP008216; BAF27318.1; -; Genomic_DNA. DR EMBL; CM000147; EAZ17072.1; ALT_SEQ; Genomic_DNA. DR RefSeq; NP_001065481.1; -. DR UniGene; Os.18549; -. DR SMR; Q336P2; 136-197. DR GeneID; 4349488; -. DR GenomeReviews; AP008216_GR; ROC3. DR KEGG; osa:4349488; -. DR Gramene; Q336P2; -. DR HOGENOM; HBG316483; -. DR ProtClustDB; CLSN2698297; -. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0003700; F:transcription factor activity; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-dependent; IEA:InterPro. DR GO; GO:0006350; P:transcription; IEA:UniProtKB-KW. DR InterPro; IPR001356; Homeobox. DR InterPro; IPR017970; Homeobox_CS. DR InterPro; IPR009057; Homeodomain-like. DR InterPro; IPR012287; Homeodomain-rel. DR InterPro; IPR002913; START_lipid_bd. DR Gene3D; G3DSA:1.10.10.60; Homeodomain-rel; 1. DR Pfam; PF00046; Homeobox; 1. DR Pfam; PF01852; START; 1. DR SMART; SM00389; HOX; 1. DR SMART; SM00234; START; 1. DR SUPFAM; SSF46689; Homeodomain_like; 1. DR PROSITE; PS00027; HOMEOBOX_1; 1. DR PROSITE; PS50071; HOMEOBOX_2; 1. DR PROSITE; PS50848; START; 1. PE 2: Evidence at transcript level; KW Coiled coil; DNA-binding; Homeobox; Nucleus; Transcription; KW Transcription regulation. FT CHAIN 1 882 Homeobox-leucine zipper protein ROC3. FT /FTId=PRO_0000331740. FT DOMAIN 340 584 START. FT DNA_BIND 134 193 Homeobox. FT COILED 200 263 Potential. FT COMPBIAS 265 269 Poly-Gly. FT COMPBIAS 791 795 Poly-Thr. FT COMPBIAS 813 816 Poly-Asn. SQ SEQUENCE 882 AA; 94667 MW; 5C83A6D6F6B7B9FC CRC64; MRRMFGDCQV LSSMAAMAGA ASSADALFAS PLIPNPALAG FMSSSAAMPF HHFSNAAATL IPKEEGLMGG LHVAKDEGMD LEMDMELSGG SGSAHLDGLL SFADVDDDHK PQHSGHDQPP DAAQPSGAAG GNAKKKRYHR HTAHQIQQME ALFKECPHPD DKQRLKLSQE LGLKPRQVKF WFQNRRTQMK AQQDRADNVI LRAENENLKS DNFRLQAAIR NVVCPNCGHA AVLADMSYEE QQLRIENARL KDELDRLACI ATRYGGGGGR QPVLSTSALS CISAPPPVLM PPLDLDMNVY SRHFAEQAPV MGCGDLIPPP VVPQHDGAAA YMGAMMAPVQ EQDKQLVVDL AATAADQLAR MCRAGEPLWV RQRGAEVMAV EEHARMFSWP VDGAKQGDGG AVARAEGTRD NAVVIMNSIN LVDAFLDANK WMELFPSIVC KARTIQIINH GAASGHLGSG TLLLMQAEVQ FLSPLVAARE VVFFRYCVHN ADEGSWAIVD FPAEGFEEGL LQASVVRCRR RPSGCIIQDM PNGYSRVVWV EHMEMVGEEK PLQPVFRDYV ASGAAFGATR WLSILQRQCE RLASELARNI ADLGVIRTPE ARTNMMKLSQ RMITTFCANI SASGTQSWTA LSDSTQDTIR VTTRKNTEPG QPSGVILTAV STSWLPFTHQ QVFELLADEQ QRCQLEILSN GGSLHEVAHI ANGSHPRNCI SLLRINAASN SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGED PSYIPLLPLG FAIFPATSPS PAAAPTISSS TTTTTGNGNG ETSSTPPRNS SSNNNNADEL LPPNGCLLTV GMQVLASAVP SAKLNLSSVT AINSHVCNAI HQITAALKSS AGGAGGEPAS DQ //