ID ROC3_ORYSJ Reviewed; 882 AA. AC Q336P2; A3C7K9; F4MGZ9; Q7Y0W0; Q8W3I3; DT 29-APR-2008, integrated into UniProtKB/Swiss-Prot. DT 06-DEC-2005, sequence version 1. DT 11-DEC-2019, entry version 103. DE RecName: Full=Homeobox-leucine zipper protein ROC3; DE AltName: Full=GLABRA 2-like homeobox protein 3; DE AltName: Full=HD-ZIP protein ROC3; DE AltName: Full=Homeodomain transcription factor ROC3; DE AltName: Full=Protein RICE OUTERMOST CELL-SPECIFIC 3; GN Name=ROC3; Synonyms=GL2-3; OrderedLocusNames=Os10g0575600, LOC_Os10g42490; GN ORFNames=OsJ_031281, OSJNBa0027L23.2; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RA Ito M., Sentoku N., Nishimura A., Hong S.-K., Sato Y., Matsuoka M.; RT "The roles of rice GL2-type homeobox genes in epidermis differentiation."; RL Submitted (JAN-2003) to the EMBL/GenBank/DDBJ databases. RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=12791992; DOI=10.1126/science.1083523; RA Yu Y., Rambo T., Currie J., Saski C., Kim H.-R., Collura K., Thompson S., RA Simmons J., Yang T.-J., Nah G., Patel A.J., Thurmond S., Henry D., RA Oates R., Palmer M., Pries G., Gibson J., Anderson H., Paradkar M., RA Crane L., Dale J., Carver M.B., Wood T., Frisch D., Engler F., RA Soderlund C., Palmer L.E., Teytelman L., Nascimento L., De la Bastide M., RA Spiegel L., Ware D., O'Shaughnessy A., Dike S., Dedhia N., Preston R., RA Huang E., Ferraro K., Kuit K., Miller B., Zutavern T., Katzenberger F., RA Muller S., Balija V., Martienssen R.A., Stein L., Minx P., Johnson D., RA Cordum H., Mardis E., Cheng Z., Jiang J., Wilson R., McCombie W.R., RA Wing R.A., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., RA Moffat K., Hill J., Tsitrin T., Overton L., Bera J., Kim M., Jin S., RA Tallon L., Ciecko A., Pai G., Van Aken S., Utterback T., Reidmuller S., RA Bormann J., Feldblyum T., Hsiao J., Zismann V., Blunt S., de Vazeille A.R., RA Shaffer T., Koo H., Suh B., Yang Q., Haas B., Peterson J., Pertea M., RA Volfovsky N., Wortman J., White O., Salzberg S.L., Fraser C.M., Buell C.R., RA Messing J., Song R., Fuks G., Llaca V., Kovchak S., Young S., Bowers J.E., RA Paterson A.H., Johns M.A., Mao L., Pan H., Dean R.A.; RT "In-depth view of structure, activity, and evolution of rice chromosome RT 10."; RL Science 300:1566-1569(2003). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [4] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [5] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R., RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L., RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H., RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using next RT generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). CC -!- FUNCTION: Probable transcription factor. {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000305}. CC -!- SIMILARITY: Belongs to the HD-ZIP homeobox family. Class IV subfamily. CC {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAL67592.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=BAC77156.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=EAZ17072.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB101646; BAC77156.1; ALT_INIT; mRNA. DR EMBL; AC018929; AAL67592.1; ALT_INIT; Genomic_DNA. DR EMBL; DP000086; ABB48020.1; -; Genomic_DNA. DR EMBL; DP000086; ABB48021.1; -; Genomic_DNA. DR EMBL; AP008216; BAF27318.1; -; Genomic_DNA. DR EMBL; AP014966; BAT12196.1; -; Genomic_DNA. DR EMBL; CM000147; EAZ17072.1; ALT_SEQ; Genomic_DNA. DR RefSeq; XP_015613461.1; XM_015757975.1. DR SMR; Q336P2; -. DR STRING; 4530.OS10T0575600-01; -. DR PaxDb; Q336P2; -. DR EnsemblPlants; Os10t0575600-01; Os10t0575600-01; Os10g0575600. DR GeneID; 4349488; -. DR Gramene; Os10t0575600-01; Os10t0575600-01; Os10g0575600. DR KEGG; osa:4349488; -. DR eggNOG; ENOG410IH8K; Eukaryota. DR eggNOG; ENOG410YCQU; LUCA. DR InParanoid; Q336P2; -. DR OMA; VEHMEMV; -. DR OrthoDB; 223056at2759; -. DR Proteomes; UP000059680; Chromosome 10. DR Genevisible; Q336P2; OS. DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0008289; F:lipid binding; IEA:InterPro. DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro. DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro. DR CDD; cd00086; homeodomain; 1. DR InterPro; IPR042160; GLABRA2/ANL2/PDF2/ATML1-like. DR InterPro; IPR009057; Homeobox-like_sf. DR InterPro; IPR017970; Homeobox_CS. DR InterPro; IPR001356; Homeobox_dom. DR InterPro; IPR002913; START_lipid-bd_dom. DR PANTHER; PTHR45654; PTHR45654; 1. DR Pfam; PF00046; Homeodomain; 1. DR Pfam; PF01852; START; 1. DR SMART; SM00389; HOX; 1. DR SMART; SM00234; START; 1. DR SUPFAM; SSF46689; SSF46689; 1. DR PROSITE; PS00027; HOMEOBOX_1; 1. DR PROSITE; PS50071; HOMEOBOX_2; 1. DR PROSITE; PS50848; START; 1. PE 2: Evidence at transcript level; KW Coiled coil; DNA-binding; Homeobox; Nucleus; Reference proteome; KW Transcription; Transcription regulation. FT CHAIN 1..882 FT /note="Homeobox-leucine zipper protein ROC3" FT /id="PRO_0000331740" FT DOMAIN 340..584 FT /note="START" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00197" FT DNA_BIND 134..193 FT /note="Homeobox" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00108" FT COILED 200..263 FT /evidence="ECO:0000255" FT COMPBIAS 265..269 FT /note="Poly-Gly" FT COMPBIAS 791..795 FT /note="Poly-Thr" FT COMPBIAS 813..816 FT /note="Poly-Asn" SQ SEQUENCE 882 AA; 94667 MW; 5C83A6D6F6B7B9FC CRC64; MRRMFGDCQV LSSMAAMAGA ASSADALFAS PLIPNPALAG FMSSSAAMPF HHFSNAAATL IPKEEGLMGG LHVAKDEGMD LEMDMELSGG SGSAHLDGLL SFADVDDDHK PQHSGHDQPP DAAQPSGAAG GNAKKKRYHR HTAHQIQQME ALFKECPHPD DKQRLKLSQE LGLKPRQVKF WFQNRRTQMK AQQDRADNVI LRAENENLKS DNFRLQAAIR NVVCPNCGHA AVLADMSYEE QQLRIENARL KDELDRLACI ATRYGGGGGR QPVLSTSALS CISAPPPVLM PPLDLDMNVY SRHFAEQAPV MGCGDLIPPP VVPQHDGAAA YMGAMMAPVQ EQDKQLVVDL AATAADQLAR MCRAGEPLWV RQRGAEVMAV EEHARMFSWP VDGAKQGDGG AVARAEGTRD NAVVIMNSIN LVDAFLDANK WMELFPSIVC KARTIQIINH GAASGHLGSG TLLLMQAEVQ FLSPLVAARE VVFFRYCVHN ADEGSWAIVD FPAEGFEEGL LQASVVRCRR RPSGCIIQDM PNGYSRVVWV EHMEMVGEEK PLQPVFRDYV ASGAAFGATR WLSILQRQCE RLASELARNI ADLGVIRTPE ARTNMMKLSQ RMITTFCANI SASGTQSWTA LSDSTQDTIR VTTRKNTEPG QPSGVILTAV STSWLPFTHQ QVFELLADEQ QRCQLEILSN GGSLHEVAHI ANGSHPRNCI SLLRINAASN SSQNVELLLQ ESSTHPDGGS LVVFATVDVD AIQVTMSGED PSYIPLLPLG FAIFPATSPS PAAAPTISSS TTTTTGNGNG ETSSTPPRNS SSNNNNADEL LPPNGCLLTV GMQVLASAVP SAKLNLSSVT AINSHVCNAI HQITAALKSS AGGAGGEPAS DQ //