ID PSD3_MOUSE Reviewed; 1037 AA. AC Q2PFD7; Q3TTA1; Q80TN6; Q80UZ7; Q8CEA6; DT 13-NOV-2007, integrated into UniProtKB/Swiss-Prot. DT 13-NOV-2007, sequence version 2. DT 12-OCT-2022, entry version 132. DE RecName: Full=PH and SEC7 domain-containing protein 3; DE AltName: Full=Exchange factor for ADP-ribosylation factor guanine nucleotide factor 6 D; DE Short=Exchange factor for ARF6 D; DE AltName: Full=Pleckstrin homology and SEC7 domain-containing protein 3; GN Name=Psd3; Synonyms=Efa6d {ECO:0000303|PubMed:23603394}, Kiaa0942; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 5), FUNCTION, TISSUE SPECIFICITY, RP DEVELOPMENTAL STAGE, AND SUBCELLULAR LOCATION. RC STRAIN=C57BL/6J; TISSUE=Brain; RX PubMed=16707115; DOI=10.1016/j.brainres.2006.02.058; RA Sakagami H., Suzuki H., Kamata A., Owada Y., Fukunaga K., Mayanagi H., RA Kondo H.; RT "Distinct spatiotemporal expression of EFA6D, a guanine nucleotide exchange RT factor for ARF6, among the EFA6 family in mouse brain."; RL Brain Res. 1093:1-11(2006). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3), AND NUCLEOTIDE SEQUENCE RP [LARGE SCALE MRNA] OF 1-729 (ISOFORM 2). RC STRAIN=C57BL/6J; TISSUE=Skin, and Testis; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 714-1037 (ISOFORM 4). RC TISSUE=Brain; RX PubMed=12693553; DOI=10.1093/dnares/10.1.35; RA Okazaki N., Kikuno R., Ohara R., Inamoto S., Aizawa H., Yuasa S., RA Nakajima D., Nagase T., Ohara O., Koga H.; RT "Prediction of the coding sequences of mouse homologues of KIAA gene: II. RT The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs RT identified by screening of terminal sequences of cDNA clones randomly RT sampled from size-fractionated libraries."; RL DNA Res. 10:35-48(2003). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 823-1037 (ISOFORM 1). RC STRAIN=FVB/N; TISSUE=Mammary tumor; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1009, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Embryonic brain; RX PubMed=15345747; DOI=10.1074/mcp.m400085-mcp200; RA Ballif B.A., Villen J., Beausoleil S.A., Schwartz D., Gygi S.P.; RT "Phosphoproteomic analysis of the developing mouse brain."; RL Mol. Cell. Proteomics 3:1093-1101(2004). RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1009, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain; RX PubMed=16452087; DOI=10.1074/mcp.t500041-mcp200; RA Trinidad J.C., Specht C.G., Thalhammer A., Schoepfer R., Burlingame A.L.; RT "Comprehensive identification of phosphorylation sites in postsynaptic RT density preparations."; RL Mol. Cell. Proteomics 5:914-922(2006). RN [7] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1009, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Liver; RX PubMed=17242355; DOI=10.1073/pnas.0609836104; RA Villen J., Beausoleil S.A., Gerber S.A., Gygi S.P.; RT "Large-scale phosphorylation analysis of mouse liver."; RL Proc. Natl. Acad. Sci. U.S.A. 104:1488-1493(2007). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-759; SER-998; SER-1000; RP SER-1001; SER-1003 AND SER-1009, AND IDENTIFICATION BY MASS SPECTROMETRY RP [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, Kidney, Liver, Pancreas, Spleen, and Testis; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). RN [9] RP SUBCELLULAR LOCATION. RX PubMed=23603394; DOI=10.1016/j.febslet.2013.03.042; RA Ueda T., Hanai A., Takei T., Kubo K., Ohgi M., Sakagami H., Takahashi S., RA Shin H.W., Nakayama K.; RT "EFA6 activates Arf6 and participates in its targeting to the Flemming body RT during cytokinesis."; RL FEBS Lett. 587:1617-1623(2013). CC -!- FUNCTION: Guanine nucleotide exchange factor for ARF6. CC {ECO:0000269|PubMed:16707115}. CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000269|PubMed:23603394}. Cell CC projection, ruffle membrane {ECO:0000269|PubMed:23603394}. Postsynaptic CC density {ECO:0000269|PubMed:16707115}. Note=In interphase associated CC with the plasma membrane, in particular with membrane ruffling regions. CC {ECO:0000269|PubMed:23603394}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=5; CC Name=1; CC IsoId=Q2PFD7-1; Sequence=Displayed; CC Name=2; CC IsoId=Q2PFD7-2; Sequence=VSP_029160; CC Name=3; CC IsoId=Q2PFD7-3; Sequence=VSP_029157, VSP_029159, VSP_029160; CC Name=4; CC IsoId=Q2PFD7-4; Sequence=VSP_029161; CC Name=5; CC IsoId=Q2PFD7-5; Sequence=VSP_029158; CC -!- TISSUE SPECIFICITY: Ubiquitously expressed, with highest levels in CC liver. Present in brain, with highest levels in olfactory bulb, cortex, CC hippocampal pyramidal cell layer and cerebellar granule cell layer (at CC protein level). {ECO:0000269|PubMed:16707115}. CC -!- DEVELOPMENTAL STAGE: Expressed only in spinal cord at 13 dpc. At 18 dpc CC and P0, appears weakly in forebrain. Expression in brain increases CC after birth and peaks at P10. {ECO:0000269|PubMed:16707115}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB220685; BAE73186.1; -; mRNA. DR EMBL; AK028684; BAC26065.1; -; mRNA. DR EMBL; AK161498; BAE36424.1; -; mRNA. DR EMBL; AK122405; BAC65687.1; -; mRNA. DR EMBL; BC042208; AAH42208.1; -; mRNA. DR CCDS; CCDS22340.1; -. [Q2PFD7-3] DR CCDS; CCDS40355.3; -. [Q2PFD7-5] DR RefSeq; NP_081902.1; NM_027626.1. DR RefSeq; NP_084539.2; NM_030263.5. [Q2PFD7-3] DR RefSeq; NP_808366.2; NM_177698.4. [Q2PFD7-5] DR RefSeq; XP_017168191.1; XM_017312702.1. [Q2PFD7-2] DR AlphaFoldDB; Q2PFD7; -. DR SMR; Q2PFD7; -. DR BioGRID; 231513; 3. DR IntAct; Q2PFD7; 2. DR MINT; Q2PFD7; -. DR STRING; 10090.ENSMUSP00000091178; -. DR iPTMnet; Q2PFD7; -. DR PhosphoSitePlus; Q2PFD7; -. DR SwissPalm; Q2PFD7; -. DR jPOST; Q2PFD7; -. DR MaxQB; Q2PFD7; -. DR PaxDb; Q2PFD7; -. DR PeptideAtlas; Q2PFD7; -. DR PRIDE; Q2PFD7; -. DR ProteomicsDB; 291692; -. [Q2PFD7-1] DR ProteomicsDB; 291693; -. [Q2PFD7-2] DR ProteomicsDB; 291694; -. [Q2PFD7-3] DR ProteomicsDB; 291695; -. [Q2PFD7-4] DR ProteomicsDB; 291696; -. [Q2PFD7-5] DR Antibodypedia; 9043; 150 antibodies from 21 providers. DR DNASU; 234353; -. DR Ensembl; ENSMUST00000093468; ENSMUSP00000091178; ENSMUSG00000030465. [Q2PFD7-3] DR Ensembl; ENSMUST00000093469; ENSMUSP00000091179; ENSMUSG00000030465. [Q2PFD7-5] DR Ensembl; ENSMUST00000098696; ENSMUSP00000096293; ENSMUSG00000030465. [Q2PFD7-5] DR GeneID; 234353; -. DR KEGG; mmu:234353; -. DR UCSC; uc009lvz.2; mouse. [Q2PFD7-3] DR UCSC; uc009lwc.1; mouse. [Q2PFD7-2] DR UCSC; uc057alt.1; mouse. [Q2PFD7-5] DR CTD; 23362; -. DR MGI; MGI:1918215; Psd3. DR VEuPathDB; HostDB:ENSMUSG00000030465; -. DR eggNOG; KOG0932; Eukaryota. DR GeneTree; ENSGT00940000156591; -. DR HOGENOM; CLU_011021_1_1_1; -. DR InParanoid; Q2PFD7; -. DR OMA; YDIYVSI; -. DR PhylomeDB; Q2PFD7; -. DR TreeFam; TF319755; -. DR BioGRID-ORCS; 234353; 4 hits in 70 CRISPR screens. DR ChiTaRS; Psd3; mouse. DR PRO; PR:Q2PFD7; -. DR Proteomes; UP000000589; Chromosome 8. DR RNAct; Q2PFD7; protein. DR Bgee; ENSMUSG00000030465; Expressed in subiculum and 235 other tissues. DR ExpressionAtlas; Q2PFD7; baseline and differential. DR Genevisible; Q2PFD7; MM. DR GO; GO:0070161; C:anchoring junction; IEA:UniProtKB-KW. DR GO; GO:0016020; C:membrane; IDA:MGI. DR GO; GO:0014069; C:postsynaptic density; IEA:UniProtKB-SubCell. DR GO; GO:0032587; C:ruffle membrane; IDA:UniProtKB. DR GO; GO:0005085; F:guanyl-nucleotide exchange factor activity; IDA:MGI. DR GO; GO:0032011; P:ARF protein signal transduction; IC:MGI. DR GO; GO:0032012; P:regulation of ARF protein signal transduction; IEA:InterPro. DR CDD; cd00171; Sec7; 1. DR Gene3D; 1.10.1000.11; -; 1. DR Gene3D; 2.30.29.30; -; 1. DR InterPro; IPR011993; PH-like_dom_sf. DR InterPro; IPR041681; PH_9. DR InterPro; IPR001849; PH_domain. DR InterPro; IPR023394; Sec7_C_sf. DR InterPro; IPR000904; Sec7_dom. DR InterPro; IPR035999; Sec7_dom_sf. DR Pfam; PF15410; PH_9; 1. DR Pfam; PF01369; Sec7; 1. DR SMART; SM00233; PH; 1. DR SMART; SM00222; Sec7; 1. DR SUPFAM; SSF48425; SSF48425; 1. DR PROSITE; PS50003; PH_DOMAIN; 1. DR PROSITE; PS50190; SEC7; 1. PE 1: Evidence at protein level; KW Alternative splicing; Cell membrane; Cell projection; Coiled coil; KW Guanine-nucleotide releasing factor; Membrane; Phosphoprotein; KW Reference proteome; Synapse. FT CHAIN 1..1037 FT /note="PH and SEC7 domain-containing protein 3" FT /id="PRO_0000309454" FT DOMAIN 515..723 FT /note="SEC7" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00189" FT DOMAIN 774..887 FT /note="PH" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00145" FT REGION 37..70 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 169..189 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 236..255 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 262..284 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 304..335 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 353..375 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 730..762 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 984..1037 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COILED 911..941 FT /evidence="ECO:0000255" FT COMPBIAS 262..278 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 304..319 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 730..750 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 993..1008 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1016..1037 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 76 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q9NYI0" FT MOD_RES 759 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 998 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1000 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1001 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1003 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:21183079" FT MOD_RES 1009 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:15345747, FT ECO:0007744|PubMed:16452087, ECO:0007744|PubMed:17242355, FT ECO:0007744|PubMed:21183079" FT VAR_SEQ 1..518 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_029157" FT VAR_SEQ 1..44 FT /note="MEGRNAAAEPFVWVNSASAHSQSVAKAKYEFLFGKSEEKTPDSS -> MGNC FT WSYSNLC (in isoform 5)" FT /evidence="ECO:0000303|PubMed:16707115" FT /id="VSP_029158" FT VAR_SEQ 519..530 FT /note="TRGPQEIAFWGS -> MGIIMCLIYCYC (in isoform 3)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_029159" FT VAR_SEQ 684 FT /note="Missing (in isoform 3 and isoform 2)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_029160" FT VAR_SEQ 919..966 FT /note="Missing (in isoform 4)" FT /evidence="ECO:0000303|PubMed:12693553" FT /id="VSP_029161" FT CONFLICT 190 FT /note="D -> E (in Ref. 2; BAC26065)" FT /evidence="ECO:0000305" SQ SEQUENCE 1037 AA; 114722 MW; E6E3C240AC7A61E8 CRC64; MEGRNAAAEP FVWVNSASAH SQSVAKAKYE FLFGKSEEKT PDSSDHGGST LLPPTVTNEF PEYGTMEEGG EGLRASLDFD AKSPPCRLPG QQAVHLLAGQ DSILNSVTEG PNDAPQCHPQ EQSLQPIDSL ISALKATEAR IASGTFQATK VLDKDANFSV YQVDKELSTA SHKPQRAHRT FPVGPGKSPD IPLSAEVPTE ENLSLHIQED LSALLPEEAQ AHRSQITNYR RQGPLRVPES ACPVSSSSAG SHNPVDRVGA LREQRSDLGR EHPRGYDRGG SMGRQGRIKH VEFQGVEILW TGEEAESRHP PERTASPVSK EFAKRPSHSS PACGVCSTST HLTGDVWDET CKAPSERPGT SAGTLSPMPL GESGEDDVFL RESKEHLEEN FAIQGDKERI LDQEEHLRGD DDILGPGYTE DSTDVYSSQF ETILDNTSLY YSAESLETLY SEPDSYFSFE MPLTPMIQQR IKEGGQFLER TSVGGQHDVL SVSADGGIVM GYSAGITNGL HDSANSVYTR GPQEIAFWGS RDRCFAEGKT TGVDAGSEMG STDILEKETT ESLSNGTNSN VEAAKRLAKR LYHLDRFKRS DVAKHLGKNN EFSKLVAEEY LKFFDFTGMT LDQSLRYFLK AFSLVGETQE RERVLIHFSN RYFSCNPDTI TSKDGVHCLT CAMMLLNTDL HGHVNIGKKM TCQEFITNLQ GVNEGGDFSK DLLKALYNSI KNEKLEWAVD DEEKKKSPSE GTDEKANGTH PKTISRIGST TNPFLDIPHD PNAAVYKSGF LARKIHADMD GKKTPRGKRG WKTFYAVLKG TVLYLQKDEY KPEKSLSDED LKNAVSVHHA LASKATDYEK KPNVFKLKTA DWRVLLFQTQ SPEEMQGWIN KINCVAAVFS APPFPAAIGS QKKFSRPLLP ATTTKLSQEE QLKSHESKLK QITTELAEHR SYPPDKKVKA KDVDEYKLKD HYLEFEKTRY EIYVSVLKEG GKELLTTDGN EPVGLKKSHS SPSLNPDASP VTAKVKRNVS ERKDHRPETP GIKQKVT //