ID RIMO_RHOPB Reviewed; 441 AA. AC Q214L6; DT 26-MAY-2009, integrated into UniProtKB/Swiss-Prot. DT 18-APR-2006, sequence version 1. DT 11-DEC-2019, entry version 94. DE RecName: Full=Ribosomal protein S12 methylthiotransferase RimO {ECO:0000255|HAMAP-Rule:MF_01865}; DE Short=S12 MTTase {ECO:0000255|HAMAP-Rule:MF_01865}; DE Short=S12 methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865}; DE EC=2.8.4.4 {ECO:0000255|HAMAP-Rule:MF_01865}; DE AltName: Full=Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000255|HAMAP-Rule:MF_01865}; DE AltName: Full=Ribosome maturation factor RimO {ECO:0000255|HAMAP-Rule:MF_01865}; GN Name=rimO {ECO:0000255|HAMAP-Rule:MF_01865}; OrderedLocusNames=RPC_2620; OS Rhodopseudomonas palustris (strain BisB18). OC Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; OC Bradyrhizobiaceae; Rhodopseudomonas. OX NCBI_TaxID=316056; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=BisB18; RG US DOE Joint Genome Institute; RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., RA Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., RA Hauser L., Pelletier D.A., Kyrpides N., Anderson I., Oda Y., Harwood C.S., RA Richardson P.; RT "Complete sequence of Rhodopseudomonas palustris BisB18."; RL Submitted (MAR-2006) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Catalyzes the methylthiolation of an aspartic acid residue of CC ribosomal protein S12. {ECO:0000255|HAMAP-Rule:MF_01865}. CC -!- CATALYTIC ACTIVITY: CC Reaction=[sulfur carrier]-SH + AH2 + L-aspartate(89)-[ribosomal protein CC uS12]-hydrogen + 2 S-adenosyl-L-methionine = 3-methylsulfanyl-L- CC aspartate(89)-[ribosomal protein uS12]-hydrogen + 5'-deoxyadenosine + CC [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L- CC homocysteine; Xref=Rhea:RHEA:37087, Rhea:RHEA-COMP:10460, Rhea:RHEA- CC COMP:10461, Rhea:RHEA-COMP:14737, Rhea:RHEA-COMP:14739, CC ChEBI:CHEBI:13193, ChEBI:CHEBI:15378, ChEBI:CHEBI:17319, CC ChEBI:CHEBI:17499, ChEBI:CHEBI:29917, ChEBI:CHEBI:29961, CC ChEBI:CHEBI:57844, ChEBI:CHEBI:57856, ChEBI:CHEBI:59789, CC ChEBI:CHEBI:64428, ChEBI:CHEBI:73599; EC=2.8.4.4; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01865}; CC -!- COFACTOR: CC Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883; CC Evidence={ECO:0000255|HAMAP-Rule:MF_01865}; CC Note=Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 CC cysteines and an exchangeable S-adenosyl-L-methionine. CC {ECO:0000255|HAMAP-Rule:MF_01865}; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_01865}. CC -!- SIMILARITY: Belongs to the methylthiotransferase family. RimO CC subfamily. {ECO:0000255|HAMAP-Rule:MF_01865}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; CP000301; ABD88170.1; -; Genomic_DNA. DR RefSeq; WP_011473066.1; NC_007925.1. DR SMR; Q214L6; -. DR STRING; 316056.RPC_2620; -. DR PRIDE; Q214L6; -. DR EnsemblBacteria; ABD88170; ABD88170; RPC_2620. DR KEGG; rpc:RPC_2620; -. DR eggNOG; ENOG4105CBM; Bacteria. DR eggNOG; COG0621; LUCA. DR HOGENOM; HOG000224766; -. DR KO; K14441; -. DR OMA; CLSERYK; -. DR OrthoDB; 397139at2; -. DR BioCyc; RPAL316056:G1G6B-2634-MONOMER; -. DR Proteomes; UP000001948; Chromosome. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell. DR GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-UniRule. DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW. DR GO; GO:0103039; F:protein methylthiotransferase activity; IEA:UniProtKB-EC. DR GO; GO:0018339; P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid; IEA:UniProtKB-UniRule. DR GO; GO:0006400; P:tRNA modification; IEA:InterPro. DR Gene3D; 3.40.50.12160; -; 1. DR Gene3D; 3.80.30.20; -; 1. DR HAMAP; MF_01865; MTTase_RimO; 1. DR InterPro; IPR006638; Elp3/MiaB/NifB. DR InterPro; IPR005839; Methylthiotransferase. DR InterPro; IPR020612; Methylthiotransferase_CS. DR InterPro; IPR013848; Methylthiotransferase_N. DR InterPro; IPR038135; Methylthiotransferase_N_sf. DR InterPro; IPR005840; Ribosomal_S12_MeSTrfase_RimO. DR InterPro; IPR041582; RimO_TRAM. DR InterPro; IPR007197; rSAM. DR InterPro; IPR023404; rSAM_horseshoe. DR InterPro; IPR002792; TRAM_dom. DR PANTHER; PTHR43837; PTHR43837; 1. DR Pfam; PF04055; Radical_SAM; 1. DR Pfam; PF18693; TRAM_2; 1. DR Pfam; PF00919; UPF0004; 1. DR SFLD; SFLDF00274; ribosomal_protein_S12_methylth; 1. DR SFLD; SFLDG01061; methylthiotransferase; 1. DR SMART; SM00729; Elp3; 1. DR TIGRFAMs; TIGR00089; TIGR00089; 1. DR TIGRFAMs; TIGR01125; TIGR01125; 1. DR PROSITE; PS51449; MTTASE_N; 1. DR PROSITE; PS01278; MTTASE_RADICAL; 1. DR PROSITE; PS50926; TRAM; 1. PE 3: Inferred from homology; KW 4Fe-4S; Cytoplasm; Iron; Iron-sulfur; Metal-binding; Reference proteome; KW S-adenosyl-L-methionine; Transferase. FT CHAIN 1..441 FT /note="Ribosomal protein S12 methylthiotransferase RimO" FT /id="PRO_0000374972" FT DOMAIN 7..117 FT /note="MTTase N-terminal" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" FT DOMAIN 374..440 FT /note="TRAM" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" FT METAL 16 FT /note="Iron-sulfur (4Fe-4S)" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" FT METAL 52 FT /note="Iron-sulfur (4Fe-4S)" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" FT METAL 81 FT /note="Iron-sulfur (4Fe-4S)" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" FT METAL 148 FT /note="Iron-sulfur (4Fe-4S-S-AdoMet)" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" FT METAL 152 FT /note="Iron-sulfur (4Fe-4S-S-AdoMet)" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" FT METAL 155 FT /note="Iron-sulfur (4Fe-4S-S-AdoMet)" FT /evidence="ECO:0000255|HAMAP-Rule:MF_01865" SQ SEQUENCE 441 AA; 48776 MW; 4A10D6DB6D54CDDA CRC64; MNQAAAPKVS FVSLGCPKAL VDSERIITRL RAEGYELARK HDGADLVIVN TCGFLDSAKK ESLGAIGEAM AANGKVIVTG CMGAEPEQIE AAYPNLLSIT GPQQYESVLD AVHRALPPLH NPHLDLVPAQ GIKLTPRHYA YLKISEGCNN RCSFCIIPKL RGDLVSRPAG EVLREAEKLV KAGVKELLVV SQDTSAYGVD LKYAESPWQD RNVRARFYDL AKELGELGAW VRLQYVYPYP HVDEVIGLMA QGKVLPYLDI PFQHASPEVL KQMKRPAAQD KTLARIKQWR EICPELTLRS TFIVGFPGET DSDFAYLLDW LEQAEIDRVG AFKYEAVRGA TSNALPDQVS DEVKTERWNA LMARQQKISA RRLKRKVGTR QQVIIDEVGP TVSKGRSKAD APQIDGSVYL TSRRPLRVGE IVTAKIERAD AYDLHGSVAG F //