ID RH9_ORYSJ Reviewed; 628 AA. AC Q0ILZ4; A0A0P0YBZ7; DT 03-APR-2007, integrated into UniProtKB/Swiss-Prot. DT 03-OCT-2006, sequence version 1. DT 12-AUG-2020, entry version 88. DE RecName: Full=DEAD-box ATP-dependent RNA helicase 9; DE EC=3.6.4.13; GN OrderedLocusNames=Os12g0611200, LOC_Os12g41715; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. OX NCBI_TaxID=39947; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=cv. Nipponbare; RX PubMed=16100779; DOI=10.1038/nature03895; RG International rice genome sequencing project (IRGSP); RT "The map-based sequence of the rice genome."; RL Nature 436:793-800(2005). RN [2] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=18089549; DOI=10.1093/nar/gkm978; RG The rice annotation project (RAP); RT "The rice annotation project database (RAP-DB): 2008 update."; RL Nucleic Acids Res. 36:D1028-D1033(2008). RN [3] RP GENOME REANNOTATION. RC STRAIN=cv. Nipponbare; RX PubMed=24280374; DOI=10.1186/1939-8433-6-4; RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R., RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L., RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H., RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.; RT "Improvement of the Oryza sativa Nipponbare reference genome using next RT generation sequence and optical map data."; RL Rice 6:4-4(2013). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC STRAIN=cv. Nipponbare; RG The rice full-length cDNA consortium; RT "Oryza sativa full length cDNA."; RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases. CC -!- CATALYTIC ACTIVITY: CC Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065, CC ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616, CC ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13; CC -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD box CC family of RNA helicases and controls ATP binding and hydrolysis. CC -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX21/DDX50 CC subfamily. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=BAF30271.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AP008218; BAF30271.2; ALT_SEQ; Genomic_DNA. DR EMBL; AP014968; BAT18038.1; -; Genomic_DNA. DR EMBL; AK287833; -; NOT_ANNOTATED_CDS; mRNA. DR RefSeq; XP_015620393.1; XM_015764907.1. DR SMR; Q0ILZ4; -. DR STRING; 4530.OS12T0611200-01; -. DR PaxDb; Q0ILZ4; -. DR PRIDE; Q0ILZ4; -. DR EnsemblPlants; Os12t0611200-01; Os12t0611200-01; Os12g0611200. DR GeneID; 4352769; -. DR Gramene; Os12t0611200-01; Os12t0611200-01; Os12g0611200. DR KEGG; osa:4352769; -. DR eggNOG; KOG0331; Eukaryota. DR HOGENOM; CLU_003041_29_2_1; -. DR InParanoid; Q0ILZ4; -. DR OMA; KHQPGRF; -. DR OrthoDB; 1139373at2759; -. DR Proteomes; UP000000763; Chromosome 12. DR Proteomes; UP000059680; Chromosome 12. DR Genevisible; Q0ILZ4; OS. DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0003723; F:RNA binding; IBA:GO_Central. DR GO; GO:0003724; F:RNA helicase activity; IBA:GO_Central. DR GO; GO:0000373; P:Group II intron splicing; IBA:GO_Central. DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR014014; RNA_helicase_DEAD_Q_motif. DR Pfam; PF00270; DEAD; 1. DR Pfam; PF00271; Helicase_C; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; SSF52540; 1. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR PROSITE; PS51195; Q_MOTIF; 1. PE 2: Evidence at transcript level; KW ATP-binding; Helicase; Hydrolase; Nucleotide-binding; Reference proteome; KW RNA-binding. FT CHAIN 1..628 FT /note="DEAD-box ATP-dependent RNA helicase 9" FT /id="PRO_0000282475" FT DOMAIN 129..302 FT /note="Helicase ATP-binding" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT DOMAIN 331..478 FT /note="Helicase C-terminal" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542" FT NP_BIND 142..149 FT /note="ATP" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT MOTIF 98..126 FT /note="Q motif" FT MOTIF 250..253 FT /note="DEAD box" FT COMPBIAS 480..626 FT /note="Gly-rich" SQ SEQUENCE 628 AA; 65595 MW; EFBFE0AC2784EF9A CRC64; MYSILRRAAP LRRRAVSALA AAVLRREEAA AEVVVSRRAT IPAAWFHSSP AWLGFRETGA AGAAARPQYA ADEGLFYEED KRGAKAGGVA AGGAEEGLEV AKLGISPKIV SQLASRGITK LFPIQRAVLE PAMQGKDMVG RAKTGTGKTL AFGIPILDAI IRHNEKNSPG KFPLAIVLAP TRELAKQVER EFSDSSNVET ICVYGGTPIS QQIRQLNYGV DVVIGTPGRV IDLLKRGALN LSEVRFVVLD EADQMLSVGF DEDVETILDR VPPKRQTLMF SATMPTWIQR LTQKYLKNPV TIDLVGEDDQ KLAEGISLYS IASEGHAKPA VLGELIKEHA KGGKCIVFTQ TKRDADRLSY TMGRSFQCQA LHGDITQAQR ERTLKGFREG HFNILIATDV AARGLDIPNV DLVIHFELPN SSELFVHRSG RTGRAGKKGK AIVMHSYQQS RAIRMVENDV GCKFTELPKI NVEGSDLMSG GFDSFGGGGF GREGGGSYGR RGSFGSSSSR GGGFGDSGFG RSGGGFGRSG GGGFGRSSGG GFGDSGFGRS GGGGFGDSGF GRSGGGGYGD SGFGSSGGGS GRSGFGRSGG FGDSGSGRFG GGFGNSGSGS FGNFGGNNSG QSGGFGSS //