ID ID3_HUMAN Reviewed; 119 AA. AC Q02535; A8K1T8; O75641; DT 01-FEB-1995, integrated into UniProtKB/Swiss-Prot. DT 08-FEB-2011, sequence version 2. DT 29-SEP-2021, entry version 195. DE RecName: Full=DNA-binding protein inhibitor ID-3; DE AltName: Full=Class B basic helix-loop-helix protein 25; DE Short=bHLHb25; DE AltName: Full=Helix-loop-helix protein HEIR-1; DE AltName: Full=ID-like protein inhibitor HLH 1R21; DE AltName: Full=Inhibitor of DNA binding 3; DE AltName: Full=Inhibitor of differentiation 3; GN Name=ID3; Synonyms=1R21, BHLHB25, HEIR1; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], AND VARIANT ALA-105. RX PubMed=1628620; DOI=10.1002/j.1460-2075.1992.tb05321.x; RA Ellmeier W., Aguzzi A., Kleiner E., Kurzbauer R., Weith A.; RT "Mutually exclusive expression of a helix-loop-helix gene and N-myc in RT human neuroblastomas and in normal development."; RL EMBO J. 11:2563-2571(1992). RN [2] RP NUCLEOTIDE SEQUENCE [MRNA], FUNCTION, AND VARIANT ALA-105. RX PubMed=8437843; RA Deed R.W., Bianchi S.M., Atherton G.T., Johnston D., Santibanez-Koref M., RA Murphy J.J., Norton J.D.; RT "An immediate early human gene encodes an Id-like helix-loop-helix protein RT and is regulated by protein kinase C activation in diverse cell types."; RL Oncogene 8:599-607(1993). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND VARIANT ALA-105. RC TISSUE=Blood; RX PubMed=7828896; DOI=10.1016/0378-1119(94)90676-9; RA Deed R.W., Hirose T., Mitchell E.L.D., Santibanez-Koref M.F., Norton J.D.; RT "Structural organisation and chromosomal mapping of the human Id-3 gene."; RL Gene 151:309-314(1994). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT ALA-105. RA Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., RA Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., RA Phelan M., Farmer A.; RT "Cloning of human full-length CDSs in BD Creator(TM) system donor vector."; RL Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT ALA-105. RC TISSUE=Hippocampus; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16710414; DOI=10.1038/nature04727; RA Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., RA Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., RA Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K., RA Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., RA Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., RA Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., RA Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., RA Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., RA Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., RA Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., RA Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., RA Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., RA Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., RA Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., RA Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., RA Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., RA Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., RA Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., RA Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., RA McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., RA Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., RA Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., RA Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., RA Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., RA Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., RA White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., RA Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., RA Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., RA Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.; RT "The DNA sequence and biological annotation of human chromosome 1."; RL Nature 441:315-321(2006). RN [7] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND VARIANT ALA-105. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [8] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA], AND VARIANT ALA-105. RC TISSUE=Skin; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [9] RP INTERACTION WITH CLOCK AND ARNTL. RX PubMed=20861012; DOI=10.1074/jbc.m110.175182; RA Ward S.M., Fernando S.J., Hou T.Y., Duffield G.E.; RT "The transcriptional repressor ID2 can interact with the canonical clock RT components CLOCK and BMAL1 and mediate inhibitory effects on mPer1 RT expression."; RL J. Biol. Chem. 285:38987-39000(2010). RN [10] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=22814378; DOI=10.1073/pnas.1210303109; RA Van Damme P., Lasa M., Polevoda B., Gazquez C., Elosegui-Artola A., RA Kim D.S., De Juan-Pardo E., Demeyer K., Hole K., Larrea E., Timmerman E., RA Prieto J., Arnesen T., Sherman F., Gevaert K., Aldabe R.; RT "N-terminal acetylome analyses and functional insights of the N-terminal RT acetyltransferase NatB."; RL Proc. Natl. Acad. Sci. U.S.A. 109:12449-12454(2012). CC -!- FUNCTION: Transcriptional regulator (lacking a basic DNA binding CC domain) which negatively regulates the basic helix-loop-helix (bHLH) CC transcription factors by forming heterodimers and inhibiting their DNA CC binding and transcriptional activity. Implicated in regulating a CC variety of cellular processes, including cellular growth, senescence, CC differentiation, apoptosis, angiogenesis, and neoplastic CC transformation. Involved in myogenesis by inhibiting skeletal muscle CC and cardiac myocyte differentiation and promoting muscle precursor CC cells proliferation. Inhibits the binding of E2A-containing protein CC complexes to muscle creatine kinase E-box enhancer. Regulates the CC circadian clock by repressing the transcriptional activator activity of CC the CLOCK-ARNTL/BMAL1 heterodimer. {ECO:0000269|PubMed:8437843}. CC -!- SUBUNIT: Homodimer, and heterodimer with other HLH proteins. Interacts CC with COPS5 and COPS7A. Interacts with IFI204. Interacts with GATA4 and CC NKX2-5. Interacts with ANKRD2; both proteins cooperate in myoblast CC differentiation (By similarity). Interacts with CLOCK and ARNTL/BMAL1. CC {ECO:0000250, ECO:0000269|PubMed:20861012}. CC -!- INTERACTION: CC Q02535; Q49AR9: ANKS1A; NbExp=3; IntAct=EBI-1387094, EBI-11954519; CC Q02535; A0A087WZT3: BOLA2B; NbExp=3; IntAct=EBI-1387094, EBI-12006120; CC Q02535; Q6P5X5: C22orf39; NbExp=3; IntAct=EBI-1387094, EBI-7317823; CC Q02535; Q02930-3: CREB5; NbExp=5; IntAct=EBI-1387094, EBI-10192698; CC Q02535; G5E9A7: DMWD; NbExp=3; IntAct=EBI-1387094, EBI-10976677; CC Q02535; Q5RGS3: FAM74A1; NbExp=3; IntAct=EBI-1387094, EBI-10244822; CC Q02535; Q14192: FHL2; NbExp=4; IntAct=EBI-1387094, EBI-701903; CC Q02535; O43559: FRS3; NbExp=3; IntAct=EBI-1387094, EBI-725515; CC Q02535; Q96NT3-2: GUCD1; NbExp=3; IntAct=EBI-1387094, EBI-11978177; CC Q02535; P49639: HOXA1; NbExp=3; IntAct=EBI-1387094, EBI-740785; CC Q02535; Q92993: KAT5; NbExp=3; IntAct=EBI-1387094, EBI-399080; CC Q02535; Q6PEX3: KRTAP26-1; NbExp=3; IntAct=EBI-1387094, EBI-3957672; CC Q02535; P61968: LMO4; NbExp=3; IntAct=EBI-1387094, EBI-2798728; CC Q02535; A6NI15: MSGN1; NbExp=3; IntAct=EBI-1387094, EBI-11991020; CC Q02535; P13349: MYF5; NbExp=3; IntAct=EBI-1387094, EBI-17491620; CC Q02535; P51149: RAB7A; NbExp=3; IntAct=EBI-1387094, EBI-1056089; CC Q02535; O00560: SDCBP; NbExp=3; IntAct=EBI-1387094, EBI-727004; CC Q02535; Q7Z699: SPRED1; NbExp=3; IntAct=EBI-1387094, EBI-5235340; CC Q02535; Q99081: TCF12; NbExp=5; IntAct=EBI-1387094, EBI-722877; CC Q02535; Q99081-3: TCF12; NbExp=4; IntAct=EBI-1387094, EBI-11952764; CC Q02535; P15923: TCF3; NbExp=3; IntAct=EBI-1387094, EBI-769630; CC Q02535; P15923-3: TCF3; NbExp=3; IntAct=EBI-1387094, EBI-12000326; CC Q02535; P15884: TCF4; NbExp=5; IntAct=EBI-1387094, EBI-533224; CC Q02535; P15884-3: TCF4; NbExp=3; IntAct=EBI-1387094, EBI-13636688; CC -!- SUBCELLULAR LOCATION: Nucleus. CC -!- TISSUE SPECIFICITY: Expressed abundantly in lung, kidney and adrenal CC gland, but not in adult brain. CC -!- INDUCTION: By phorbol 12-myristate 13-acetate (PMA). CC -!- SEQUENCE CAUTION: CC Sequence=CAA47360.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; X66924; CAA47360.1; ALT_INIT; mRNA. DR EMBL; X69111; CAA48862.1; -; mRNA. DR EMBL; X73428; CAA51827.1; -; Genomic_DNA. DR EMBL; BT006791; AAP35437.1; -; mRNA. DR EMBL; AK290003; BAF82692.1; -; mRNA. DR EMBL; AL021154; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471134; EAW95060.1; -; Genomic_DNA. DR EMBL; BC003107; AAH03107.1; -; mRNA. DR CCDS; CCDS237.1; -. DR PIR; I37092; S28529. DR RefSeq; NP_002158.3; NM_002167.4. DR PDB; 2LFH; NMR; -; A/B=29-83. DR PDBsum; 2LFH; -. DR BMRB; Q02535; -. DR SMR; Q02535; -. DR BioGRID; 109625; 47. DR DIP; DIP-713N; -. DR IntAct; Q02535; 40. DR STRING; 9606.ENSP00000363689; -. DR iPTMnet; Q02535; -. DR PhosphoSitePlus; Q02535; -. DR BioMuta; ID3; -. DR DMDM; 322510035; -. DR EPD; Q02535; -. DR jPOST; Q02535; -. DR MassIVE; Q02535; -. DR MaxQB; Q02535; -. DR PaxDb; Q02535; -. DR PeptideAtlas; Q02535; -. DR PRIDE; Q02535; -. DR ProteomicsDB; 58106; -. DR Antibodypedia; 4480; 608 antibodies. DR DNASU; 3399; -. DR Ensembl; ENST00000374561; ENSP00000363689; ENSG00000117318. DR Ensembl; ENST00000634790; ENSP00000489102; ENSG00000283060. DR GeneID; 3399; -. DR KEGG; hsa:3399; -. DR UCSC; uc001bhh.5; human. DR CTD; 3399; -. DR DisGeNET; 3399; -. DR GeneCards; ID3; -. DR HGNC; HGNC:5362; ID3. DR HPA; ENSG00000117318; Tissue enhanced (seminal). DR MIM; 600277; gene. DR neXtProt; NX_Q02535; -. DR OpenTargets; ENSG00000117318; -. DR PharmGKB; PA29610; -. DR VEuPathDB; HostDB:ENSG00000117318; -. DR eggNOG; ENOG502S53I; Eukaryota. DR GeneTree; ENSGT00940000160504; -. DR HOGENOM; CLU_116790_1_0_1; -. DR InParanoid; Q02535; -. DR OMA; CCVSEQS; -. DR OrthoDB; 1624054at2759; -. DR PhylomeDB; Q02535; -. DR TreeFam; TF326217; -. DR PathwayCommons; Q02535; -. DR Reactome; R-HSA-9031628; NGF-stimulated transcription. DR SIGNOR; Q02535; -. DR BioGRID-ORCS; 3399; 13 hits in 1042 CRISPR screens. DR ChiTaRS; ID3; human. DR GeneWiki; ID3_(gene); -. DR GenomeRNAi; 3399; -. DR Pharos; Q02535; Tbio. DR PRO; PR:Q02535; -. DR Proteomes; UP000005640; Chromosome 1. DR RNAct; Q02535; protein. DR Bgee; ENSG00000117318; Expressed in right lobe of thyroid gland and 224 other tissues. DR Genevisible; Q02535; HS. DR GO; GO:0005737; C:cytoplasm; IEA:Ensembl. DR GO; GO:0005654; C:nucleoplasm; TAS:Reactome. DR GO; GO:0005634; C:nucleus; IBA:GO_Central. DR GO; GO:1901707; F:leptomycin B binding; IEA:Ensembl. DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro. DR GO; GO:0019904; F:protein domain specific binding; IEA:Ensembl. DR GO; GO:0140416; F:transcription regulator inhibitor activity; TAS:ARUK-UCL. DR GO; GO:0030154; P:cell differentiation; IBA:GO_Central. DR GO; GO:0072750; P:cellular response to leptomycin B; IEA:Ensembl. DR GO; GO:0007417; P:central nervous system development; IEA:Ensembl. DR GO; GO:0032922; P:circadian regulation of gene expression; IBA:GO_Central. DR GO; GO:0030855; P:epithelial cell differentiation; IEA:Ensembl. DR GO; GO:0007507; P:heart development; IEA:Ensembl. DR GO; GO:0001656; P:metanephros development; IEA:Ensembl. DR GO; GO:0007275; P:multicellular organism development; TAS:ProtInc. DR GO; GO:0007517; P:muscle organ development; IEA:UniProtKB-KW. DR GO; GO:0043433; P:negative regulation of DNA-binding transcription factor activity; IDA:GDB. DR GO; GO:0010629; P:negative regulation of gene expression; IEA:Ensembl. DR GO; GO:0045662; P:negative regulation of myoblast differentiation; IEA:Ensembl. DR GO; GO:0045668; P:negative regulation of osteoblast differentiation; IEA:Ensembl. DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central. DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:GDB. DR GO; GO:0030182; P:neuron differentiation; IEA:Ensembl. DR GO; GO:0030903; P:notochord development; IEA:Ensembl. DR GO; GO:0042476; P:odontogenesis; IEA:Ensembl. DR GO; GO:0043065; P:positive regulation of apoptotic process; IEA:Ensembl. DR GO; GO:0010628; P:positive regulation of gene expression; IEA:Ensembl. DR GO; GO:0051726; P:regulation of cell cycle; IEA:Ensembl. DR GO; GO:0006275; P:regulation of DNA replication; IEA:Ensembl. DR GO; GO:0009611; P:response to wounding; IEA:Ensembl. DR Gene3D; 4.10.280.10; -; 1. DR InterPro; IPR011598; bHLH_dom. DR InterPro; IPR026052; DNA-bd_prot-inh. DR InterPro; IPR036638; HLH_DNA-bd_sf. DR PANTHER; PTHR11723; PTHR11723; 1. DR Pfam; PF00010; HLH; 1. DR SMART; SM00353; HLH; 1. DR SUPFAM; SSF47459; SSF47459; 1. DR PROSITE; PS50888; BHLH; 1. PE 1: Evidence at protein level; KW 3D-structure; Biological rhythms; Myogenesis; Nucleus; Reference proteome; KW Repressor; Transcription; Transcription regulation. FT CHAIN 1..119 FT /note="DNA-binding protein inhibitor ID-3" FT /id="PRO_0000127247" FT DOMAIN 28..80 FT /note="bHLH" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00981" FT VARIANT 105 FT /note="T -> A (in dbSNP:rs11574)" FT /evidence="ECO:0000269|PubMed:14702039, FT ECO:0000269|PubMed:15489334, ECO:0000269|PubMed:1628620, FT ECO:0000269|PubMed:7828896, ECO:0000269|PubMed:8437843, FT ECO:0000269|Ref.4, ECO:0000269|Ref.7" FT /id="VAR_016122" FT VARIANT 111 FT /note="S -> A (in dbSNP:rs11542317)" FT /id="VAR_030739" FT STRAND 40..42 FT /evidence="ECO:0007829|PDB:2LFH" FT HELIX 43..54 FT /evidence="ECO:0007829|PDB:2LFH" FT HELIX 66..81 FT /evidence="ECO:0007829|PDB:2LFH" SQ SEQUENCE 119 AA; 12999 MW; 7FC38B56B4DCEFBC CRC64; MKALSPVRGC YEAVCCLSER SLAIARGRGK GPAAEEPLSL LDDMNHCYSR LRELVPGVPR GTQLSQVEIL QRVIDYILDL QVVLAEPAPG PPDGPHLPIQ TAELTPELVI SNDKRSFCH //