ID YGID_ECOLI Reviewed; 262 AA. AC P24197; Q2M9G1; DT 01-MAR-1992, integrated into UniProtKB/Swiss-Prot. DT 24-NOV-2009, sequence version 3. DT 05-SEP-2012, entry version 92. DE RecName: Full=Uncharacterized protein ygiD; DE EC=1.13.-.-; GN Name=ygiD; OrderedLocusNames=b3039, JW3007; OS Escherichia coli (strain K12). OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Escherichia. OX NCBI_TaxID=83333; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX MEDLINE=92223101; PubMed=1314093; DOI=10.1016/0167-4781(92)90535-8; RA Yang T.-P., Depew R.E.; RT "Nucleotide sequence of a region duplicated in Escherichia coli toc RT mutants."; RL Biochim. Biophys. Acta 1130:227-228(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=K12 / MG1655 / ATCC 47076; RX MEDLINE=97426617; PubMed=9278503; DOI=10.1126/science.277.5331.1453; RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., RA Mau B., Shao Y.; RT "The complete genome sequence of Escherichia coli K-12."; RL Science 277:1453-1474(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911; RX PubMed=16738553; DOI=10.1038/msb4100049; RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.; RT "Highly accurate genome sequences of Escherichia coli K-12 strains RT MG1655 and W3110."; RL Mol. Syst. Biol. 2:E1-E5(2006). RN [4] RP X-RAY CRYSTALLOGRAPHY (2.27 ANGSTROMS), AND ZINC BINDING. RG Southeast collaboratory for structural genomics (SECSG); RT "Crystal structure of uncharacterized protein JW3007 from Escherichia RT coli K12."; RL Submitted (JUN-2007) to the PDB data bank. CC -!- COFACTOR: Binds 1 zinc ion per subunit. CC -!- SIMILARITY: Belongs to the DODA-type extradiol aromatic ring- CC opening dioxygenase family. CC -!- SEQUENCE CAUTION: CC Sequence=AAA69207.1; Type=Erroneous initiation; CC Sequence=AAA71877.1; Type=Erroneous initiation; CC Sequence=BAE77095.1; Type=Erroneous initiation; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; M77129; AAA71877.1; ALT_INIT; Genomic_DNA. DR EMBL; U28377; AAA69207.1; ALT_INIT; Genomic_DNA. DR EMBL; U00096; AAC76075.2; -; Genomic_DNA. DR EMBL; AP009048; BAE77095.1; ALT_INIT; Genomic_DNA. DR PIR; E65091; E65091. DR RefSeq; NP_417511.2; NC_000913.2. DR RefSeq; YP_491231.1; NC_007779.1. DR PDB; 2PW6; X-ray; 2.27 A; A=1-262. DR PDBsum; 2PW6; -. DR ProteinModelPortal; P24197; -. DR SMR; P24197; 5-262. DR IntAct; P24197; 3. DR EnsemblBacteria; EBESCT00000003484; EBESCP00000003484; EBESCG00000002859. DR EnsemblBacteria; EBESCT00000018331; EBESCP00000017622; EBESCG00000017385. DR GeneID; 12934041; -. DR GeneID; 946447; -. DR GenomeReviews; AP009048_GR; JW3007. DR GenomeReviews; U00096_GR; b3039. DR KEGG; eco:b3039; -. DR PATRIC; 32121488; VBIEscCol129921_3131. DR EchoBASE; EB1154; -. DR EcoGene; EG11166; ygiD. DR eggNOG; COG3384; -. DR HOGENOM; HOG000236850; -. DR ProtClustDB; PRK10628; -. DR BioCyc; EcoCyc:EG11166-MONOMER; -. DR EvolutionaryTrace; P24197; -. DR Genevestigator; P24197; -. DR GO; GO:0008198; F:ferrous iron binding; IEA:InterPro. DR GO; GO:0016701; F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0006725; P:cellular aromatic compound metabolic process; IEA:InterPro. DR Gene3D; G3DSA:3.40.830.10; Xdiol_dOase_3B; 1. DR InterPro; IPR014436; Extradiol_dOase_DODA. DR InterPro; IPR004183; Xdiol_dOase_suB. DR Pfam; PF02900; LigB; 1. DR PIRSF; PIRSF006157; Doxgns_DODA; 1. DR SUPFAM; SSF53213; Xdiol_dOase_3B; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Metal-binding; Oxidoreductase; KW Reference proteome; Zinc. FT CHAIN 1 262 Uncharacterized protein ygiD. FT /FTId=PRO_0000169405. FT METAL 13 13 Zinc. FT METAL 48 48 Zinc. FT METAL 168 168 Zinc. FT METAL 225 225 Zinc. FT CONFLICT 234 261 GAWDGQEPITIPVEGIEMGSLSMLSVQI -> RYVGWAGAN FT YHS (in Ref. 1; AAA71877). FT STRAND 8 12 FT HELIX 24 35 FT STRAND 40 57 FT HELIX 86 96 FT STRAND 101 106 FT HELIX 112 121 FT STRAND 129 135 FT HELIX 140 150 FT HELIX 151 156 FT STRAND 158 164 FT STRAND 175 177 FT HELIX 183 193 FT TURN 194 197 FT HELIX 202 204 FT TURN 206 208 FT HELIX 210 212 FT HELIX 216 219 FT STRAND 221 223 FT TURN 224 226 FT HELIX 227 234 FT STRAND 238 240 FT TURN 251 253 FT STRAND 259 261 SQ SEQUENCE 262 AA; 28892 MW; 7CFF9150AD49D50C CRC64; MSSTRMPALF LGHGSPMNVL EDNLYTRSWQ KLGMTLPRPQ AIVVVSAHWF TRGTGVTAME TPPTIHDFGG FPQALYDTHY PAPGSPALAQ RLVELLAPIP VTLDKEAWGF DHGSWGVLIK MYPDADIPMV QLSIDSSKPA AWHFEMGRKL AALRDEGIML VASGNVVHNL RTVKWHGDSS PYPWATSFNE YVKANLTWQG PVEQHPLVNY LDHEGGTLSN PTPEHYLPLL YVLGAWDGQE PITIPVEGIE MGSLSMLSVQ IG //