ID YGID_ECOLI Reviewed; 271 AA. AC P24197; Q2M9G1; DT 01-MAR-1992, integrated into UniProtKB/Swiss-Prot. DT 01-OCT-1996, sequence version 2. DT 29-APR-2008, entry version 58. DE Uncharacterized protein ygiD (EC 1.13.-.-). GN Name=ygiD; OrderedLocusNames=b3039, JW3007; OS Escherichia coli (strain K12). OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; OC Enterobacteriaceae; Escherichia. OX NCBI_TaxID=83333; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX MEDLINE=92223101; PubMed=1314093; DOI=10.1016/0167-4781(92)90535-8; RA Yang T.-P., Depew R.E.; RT "Nucleotide sequence of a region duplicated in Escherichia coli toc RT mutants."; RL Biochim. Biophys. Acta 1130:227-228(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=K12 / MG1655 / ATCC 47076; RX MEDLINE=97426617; PubMed=9278503; DOI=10.1126/science.277.5331.1453; RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., RA Mau B., Shao Y.; RT "The complete genome sequence of Escherichia coli K-12."; RL Science 277:1453-1474(1997). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911; RX PubMed=16738553; DOI=10.1038/msb4100049; RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.; RT "Highly accurate genome sequences of Escherichia coli K-12 strains RT MG1655 and W3110."; RL Mol. Syst. Biol. 2:E1-E5(2006). RN [4] RP X-RAY CRYSTALLOGRAPHY (2.27 ANGSTROMS), AND ZINC BINDING. RG Southeast collaboratory for structural genomics (SECSG); RT "Crystal structure of uncharacterized protein JW3007 from Escherichia RT coli K12."; RL Submitted (JUN-2007) to the PDB data bank. CC -!- COFACTOR: Binds 1 zinc ion per subunit. CC -!- SIMILARITY: Belongs to the DODA-type extradiol aromatic ring- CC opening dioxygenase family. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; M77129; AAA71877.1; -; Genomic_DNA. DR EMBL; U28377; AAA69207.1; -; Genomic_DNA. DR EMBL; U00096; AAC76075.1; -; Genomic_DNA. DR EMBL; AP009048; BAE77095.1; -; Genomic_DNA. DR PIR; E65091; E65091. DR RefSeq; AP_003589.1; -. DR RefSeq; NP_417511.1; -. DR PDB; 2PW6; X-ray; 2.27 A; A=1-271. DR PDBsum; 2PW6; -. DR IntAct; P24197; -. DR GeneID; 946447; -. DR GenomeReviews; U00096_GR; b3039. DR GenomeReviews; AP009048_GR; JW3007. DR KEGG; ecj:JW3007; -. DR KEGG; eco:b3039; -. DR EchoBASE; EB1154; -. DR EcoGene; EG11166; ygiD. DR BioCyc; EcoCyc:EG11166-MON; -. DR LinkHub; P24197; -. DR InterPro; IPR014436; Doxgns_DODA. DR InterPro; IPR004183; Xdiol_dOase_3B. DR Pfam; PF02900; LigB; 1. DR PIRSF; PIRSF006157; Doxgns_DODA; 1. PE 1: Evidence at protein level; KW 3D-structure; Complete proteome; Metal-binding; Oxidoreductase; Zinc. FT CHAIN 1 271 Uncharacterized protein ygiD. FT /FTId=PRO_0000169405. FT METAL 22 22 Zinc. FT METAL 57 57 Zinc. FT METAL 177 177 Zinc. FT METAL 234 234 Zinc. FT CONFLICT 243 270 GAWDGQEPITIPVEGIEMGSLSMLSVQI -> RYVGWAGAN FT YHS (in Ref. 1; AAA71877). FT STRAND 17 21 FT HELIX 33 44 FT STRAND 49 66 FT HELIX 95 105 FT STRAND 110 115 FT HELIX 121 130 FT STRAND 138 144 FT HELIX 149 159 FT HELIX 160 165 FT STRAND 167 173 FT STRAND 184 186 FT HELIX 192 202 FT TURN 203 206 FT HELIX 211 213 FT TURN 215 217 FT HELIX 219 221 FT HELIX 225 228 FT STRAND 230 232 FT TURN 233 235 FT HELIX 236 243 FT STRAND 247 249 FT TURN 260 262 FT STRAND 268 270 SQ SEQUENCE 271 AA; 29903 MW; A74E9035BAF6EB0F CRC64; MTPLVKDIIM SSTRMPALFL GHGSPMNVLE DNLYTRSWQK LGMTLPRPQA IVVVSAHWFT RGTGVTAMET PPTIHDFGGF PQALYDTHYP APGSPALAQR LVELLAPIPV TLDKEAWGFD HGSWGVLIKM YPDADIPMVQ LSIDSSKPAA WHFEMGRKLA ALRDEGIMLV ASGNVVHNLR TVKWHGDSSP YPWATSFNEY VKANLTWQGP VEQHPLVNYL DHEGGTLSNP TPEHYLPLLY VLGAWDGQEP ITIPVEGIEM GSLSMLSVQI G //