ID APC2_HUMAN Reviewed; 2303 AA. AC O95996; Q05BW4; Q9UBZ1; Q9UEM8; Q9UQJ8; Q9UQJ9; Q9Y632; DT 15-JAN-2008, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 1. DT 04-FEB-2015, entry version 113. DE RecName: Full=Adenomatous polyposis coli protein 2; DE AltName: Full=Adenomatous polyposis coli protein-like; DE Short=APC-like; GN Name=APC2; Synonyms=APCL; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; OC Catarrhini; Hominidae; Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INTERACTION WITH RP CTNNB1, AND TISSUE SPECIFICITY. RC TISSUE=Brain; RX PubMed=9823329; RA Nakagawa H., Murata Y., Koyama K., Fujiyama A., Miyoshi Y., Monden M., RA Akiyama T., Nakamura Y.; RT "Identification of a brain-specific APC homologue, APCL, and its RT interaction with beta-catenin."; RL Cancer Res. 58:5176-5181(1998). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] (ISOFORM 1). RX PubMed=10551328; RA Nakagawa H., Koyama K., Monden M., Nakamura Y.; RT "Analysis of APCL, a brain-specific adenomatous polyposis coli RT homologue, for mutations and expression in brain tumors."; RL Jpn. J. Cancer Res. 90:982-986(1999). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., RA Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., RA Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., RA Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R., RA Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., RA Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., RA Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., RA Venter J.C.; RL Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [MRNA] OF 1-1521 (ISOFORM 2), AND NUCLEOTIDE RP SEQUENCE [GENOMIC DNA] OF 34-86 AND 476-555 (ISOFORM 2). RA Carr I.M., Markham A.F., Colleta P.L., Wai L., Askham J., Morrison E., RA Meredith D.M.; RT "APC2 alternatively spliced cDNA sequence."; RL Submitted (NOV-1998) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [MRNA] OF 1-731 (ISOFORM 3), NUCLEOTIDE SEQUENCE RP [GENOMIC DNA] OF 618-2303 (ISOFORM 3), FUNCTION, INTERACTION WITH RP AXIN2, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE. RC TISSUE=Kidney; RX PubMed=10021369; DOI=10.1016/S0960-9822(99)80024-4; RA van Es J.H., Kirkpatrick C., van de Wetering M., Molenaar M., RA Miles A., Kuipers J., Destree O., Peifer M., Clevers H.; RT "Identification of APC2, a homologue of the adenomatous polyposis coli RT tumour suppressor."; RL Curr. Biol. 9:105-108(1999). RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-702 (ISOFORM 1). RC TISSUE=Brain; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA RT project: the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [7] RP INTERACTION WITH TP53BP2, AND SUBCELLULAR LOCATION. RX PubMed=10646860; RA Nakagawa H., Koyama K., Murata Y., Morito M., Akiyama T., Nakamura Y.; RT "APCL, a central nervous system-specific homologue of adenomatous RT polyposis coli tumor suppressor, binds to p53-binding protein 2 and RT translocates it to the perinucleus."; RL Cancer Res. 60:101-105(2000). RN [8] RP INTERACTION WITH MAPRE1 AND MAPRE3, AND SUBCELLULAR LOCATION. RC TISSUE=Fetal brain; RX PubMed=10644998; DOI=10.1038/sj.onc.1203308; RA Nakagawa H., Koyama K., Murata Y., Morito M., Akiyama T., Nakamura Y.; RT "EB3, a novel member of the EB1 family preferentially expressed in the RT central nervous system, binds to a CNS-specific APC homologue."; RL Oncogene 19:210-216(2000). RN [9] RP FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH APC, AND TISSUE RP SPECIFICITY. RX PubMed=11691822; RA Jarrett C.R., Blancato J., Cao T., Bressette D.S., Cepeda M., RA Young P.E., King C.R., Byers S.W.; RT "Human APC2 localization and allelic imbalance."; RL Cancer Res. 61:7978-7984(2001). RN [10] RP VARIANTS [LARGE SCALE ANALYSIS] SER-562 AND SER-2003. RX PubMed=16959974; DOI=10.1126/science.1133427; RA Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., RA Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., RA Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., RA Dawson D., Willson J.K.V., Gazdar A.F., Hartigan J., Wu L., Liu C., RA Parmigiani G., Park B.H., Bachman K.E., Papadopoulos N., RA Vogelstein B., Kinzler K.W., Velculescu V.E.; RT "The consensus coding sequences of human breast and colorectal RT cancers."; RL Science 314:268-274(2006). CC -!- FUNCTION: Promotes rapid degradation of CTNNB1 and may function as CC a tumor suppressor. May function in Wnt signaling. CC {ECO:0000269|PubMed:10021369, ECO:0000269|PubMed:11691822, CC ECO:0000269|PubMed:9823329}. CC -!- SUBUNIT: Interacts with PSRC1 (By similarity). Interacts with APC, CC CTNNB1, MAPRE1, MAPRE3, TP53BP2 and possibly with AXIN2. CC {ECO:0000250, ECO:0000269|PubMed:10021369, CC ECO:0000269|PubMed:10644998, ECO:0000269|PubMed:10646860, CC ECO:0000269|PubMed:11691822, ECO:0000269|PubMed:9823329}. CC -!- INTERACTION: CC Q15691:MAPRE1; NbExp=3; IntAct=EBI-1053045, EBI-1004115; CC Q9UPY8:MAPRE3; NbExp=7; IntAct=EBI-1053045, EBI-726739; CC Q13625:TP53BP2; NbExp=4; IntAct=EBI-1053045, EBI-77642; CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton. Golgi apparatus CC membrane; Peripheral membrane protein; Cytoplasmic side. Cell CC membrane; Peripheral membrane protein; Cytoplasmic side. CC Note=Associated with actin filaments and the microtubule network. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; CC IsoId=O95996-1; Sequence=Displayed; CC Name=2; CC IsoId=O95996-2; Sequence=VSP_030106; CC Name=3; CC IsoId=O95996-3; Sequence=VSP_030107; CC -!- TISSUE SPECIFICITY: Widely expressed (at protein level). CC Specifically expressed in the CNS. {ECO:0000269|PubMed:10021369, CC ECO:0000269|PubMed:11691822, ECO:0000269|PubMed:9823329}. CC -!- DEVELOPMENTAL STAGE: Expressed in fetal brain. CC {ECO:0000269|PubMed:10021369}. CC -!- SIMILARITY: Belongs to the adenomatous polyposis coli (APC) CC family. {ECO:0000305}. CC -!- SIMILARITY: Contains 6 ARM repeats. {ECO:0000305}. CC -!- SEQUENCE CAUTION: CC Sequence=AAD28183.1; Type=Frameshift; Positions=1322, 1338; Evidence={ECO:0000305}; CC Sequence=AAF01784.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence.; Evidence={ECO:0000305}; CC Sequence=CAA10317.1; Type=Erroneous initiation; Evidence={ECO:0000305}; CC Sequence=CAB61207.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB012162; BAA34611.1; -; mRNA. DR EMBL; AB022529; BAA75469.1; -; Genomic_DNA. DR EMBL; CH471139; EAW69498.1; -; Genomic_DNA. DR EMBL; AF110334; AAD28183.1; ALT_FRAME; mRNA. DR EMBL; AF110335; AAD29273.1; -; Genomic_DNA. DR EMBL; AF110337; AAD29274.1; -; Genomic_DNA. DR EMBL; AF110336; AAD29274.1; JOINED; Genomic_DNA. DR EMBL; AF128222; AAF01784.1; ALT_SEQ; mRNA. DR EMBL; AJ012652; CAB61207.1; ALT_SEQ; mRNA. DR EMBL; AJ131187; CAA10317.1; ALT_INIT; Genomic_DNA. DR EMBL; BC032573; AAH32573.1; -; mRNA. DR CCDS; CCDS12068.1; -. [O95996-1] DR RefSeq; NP_005874.1; NM_005883.2. [O95996-1] DR RefSeq; XP_006722671.1; XM_006722608.1. [O95996-1] DR RefSeq; XP_006722672.1; XM_006722609.1. [O95996-1] DR RefSeq; XP_006722673.1; XM_006722610.1. [O95996-3] DR UniGene; Hs.446376; -. DR ProteinModelPortal; O95996; -. DR SMR; O95996; 6-57, 131-234, 287-703. DR BioGrid; 115585; 17. DR IntAct; O95996; 4. DR STRING; 9606.ENSP00000233607; -. DR PhosphoSite; O95996; -. DR PaxDb; O95996; -. DR PRIDE; O95996; -. DR Ensembl; ENST00000233607; ENSP00000233607; ENSG00000115266. [O95996-1] DR Ensembl; ENST00000535453; ENSP00000442954; ENSG00000115266. [O95996-1] DR Ensembl; ENST00000590469; ENSP00000467073; ENSG00000115266. DR GeneID; 10297; -. DR KEGG; hsa:10297; -. DR UCSC; uc002lsr.1; human. [O95996-1] DR UCSC; uc002lsu.1; human. [O95996-3] DR CTD; 10297; -. DR GeneCards; GC19P001450; -. DR H-InvDB; HIX0039920; -. DR HGNC; HGNC:24036; APC2. DR HPA; HPA050820; -. DR MIM; 612034; gene. DR neXtProt; NX_O95996; -. DR PharmGKB; PA134906843; -. DR eggNOG; NOG259696; -. DR GeneTree; ENSGT00530000063749; -. DR HOVERGEN; HBG104821; -. DR InParanoid; O95996; -. DR KO; K02085; -. DR OMA; SIPSDPC; -. DR OrthoDB; EOG7BCN9S; -. DR PhylomeDB; O95996; -. DR TreeFam; TF106496; -. DR SignaLink; O95996; -. DR GenomeRNAi; 10297; -. DR NextBio; 39024; -. DR PRO; PR:O95996; -. DR Proteomes; UP000005640; Chromosome 19. DR Bgee; O95996; -. DR CleanEx; HS_APC2; -. DR ExpressionAtlas; O95996; baseline and differential. DR Genevestigator; O95996; -. DR GO; GO:0005884; C:actin filament; IDA:BHF-UCL. DR GO; GO:0016342; C:catenin complex; IDA:MGI. DR GO; GO:0005737; C:cytoplasm; IDA:BHF-UCL. DR GO; GO:0005794; C:Golgi apparatus; IDA:BHF-UCL. DR GO; GO:0000139; C:Golgi membrane; IEA:UniProtKB-SubCell. DR GO; GO:0031258; C:lamellipodium membrane; IDA:BHF-UCL. DR GO; GO:0005874; C:microtubule; IEA:UniProtKB-KW. DR GO; GO:0015630; C:microtubule cytoskeleton; IDA:BHF-UCL. DR GO; GO:0048471; C:perinuclear region of cytoplasm; IDA:BHF-UCL. DR GO; GO:0008013; F:beta-catenin binding; IDA:MGI. DR GO; GO:0090090; P:negative regulation of canonical Wnt signaling pathway; IDA:BHF-UCL. DR GO; GO:0035414; P:negative regulation of catenin import into nucleus; IDA:BHF-UCL. DR GO; GO:0016055; P:Wnt signaling pathway; IEA:UniProtKB-KW. DR Gene3D; 1.25.10.10; -; 1. DR InterPro; IPR026837; APC2. DR InterPro; IPR009234; APC_basic_dom. DR InterPro; IPR009223; APC_Cys-rich_rpt. DR InterPro; IPR026831; APC_dom. DR InterPro; IPR026818; Apc_fam. DR InterPro; IPR011989; ARM-like. DR InterPro; IPR016024; ARM-type_fold. DR InterPro; IPR000225; Armadillo. DR InterPro; IPR009224; SAMP. DR PANTHER; PTHR12607; PTHR12607; 1. DR PANTHER; PTHR12607:SF3; PTHR12607:SF3; 1. DR Pfam; PF05956; APC_basic; 1. DR Pfam; PF05923; APC_crr; 4. DR Pfam; PF00514; Arm; 1. DR Pfam; PF05924; SAMP; 2. DR Pfam; PF11414; Suppressor_APC; 1. DR SMART; SM00185; ARM; 6. DR SUPFAM; SSF48371; SSF48371; 1. PE 1: Evidence at protein level; KW Alternative splicing; Cell membrane; Coiled coil; Complete proteome; KW Cytoplasm; Cytoskeleton; Golgi apparatus; Membrane; Microtubule; KW Polymorphism; Reference proteome; Repeat; Wnt signaling pathway. FT CHAIN 1 2303 Adenomatous polyposis coli protein 2. FT /FTId=PRO_0000313686. FT REPEAT 302 341 ARM 1. FT REPEAT 479 518 ARM 2. FT REPEAT 522 562 ARM 3. FT REPEAT 566 609 ARM 4. FT REPEAT 615 654 ARM 5. FT REPEAT 657 696 ARM 6. FT REPEAT 1058 1077 1. FT REPEAT 1150 1169 2. FT REPEAT 1263 1282 3. FT REPEAT 1391 1410 4. FT REPEAT 1568 1587 5. FT REGION 1058 1587 5 X 20 AA approximate repeat of F-X-V-E- FT X-T-P-X-C-F-S-R-X-S-S-L-S-S-L-S. FT REGION 1058 1587 Interaction with CTNNB1. FT REGION 2067 2144 Interaction with MAPRE1 and MAPRE3. FT COILED 8 59 {ECO:0000255}. FT COILED 840 864 {ECO:0000255}. FT COMPBIAS 1145 1196 Ser-rich. FT COMPBIAS 1518 1622 Pro-rich. FT COMPBIAS 1765 1953 Pro-rich. FT VAR_SEQ 168 441 Missing (in isoform 2). FT {ECO:0000303|Ref.4}. FT /FTId=VSP_030106. FT VAR_SEQ 175 175 Missing (in isoform 3). FT {ECO:0000303|PubMed:10021369}. FT /FTId=VSP_030107. FT VARIANT 562 562 A -> S (in a breast cancer sample; FT somatic mutation). FT {ECO:0000269|PubMed:16959974}. FT /FTId=VAR_037703. FT VARIANT 2003 2003 G -> S (in a breast cancer sample; FT somatic mutation). FT {ECO:0000269|PubMed:16959974}. FT /FTId=VAR_037704. FT VARIANT 2241 2241 S -> A (in dbSNP:rs265277). FT /FTId=VAR_037705. FT CONFLICT 463 463 Missing (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 526 527 KV -> NL (in Ref. 4; AAD28183/AAD29274). FT {ECO:0000305}. FT CONFLICT 566 566 E -> A (in Ref. 5; AAF01784/CAB61207). FT {ECO:0000305}. FT CONFLICT 816 816 L -> Q (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 971 971 L -> P (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 1106 1106 S -> I (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 1140 1140 E -> G (in Ref. 5; CAA10317). FT {ECO:0000305}. FT CONFLICT 1188 1188 Q -> H (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 1361 1361 A -> G (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 1456 1456 R -> P (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 1515 1515 D -> V (in Ref. 4; AAD28183). FT {ECO:0000305}. FT CONFLICT 2219 2219 A -> V (in Ref. 5; CAA10317). FT {ECO:0000305}. SQ SEQUENCE 2303 AA; 243949 MW; 7BF940183ACD643D CRC64; MASSVAPYEQ LVRQVEALKA ENSHLRQELR DNSSHLSKLE TETSGMKEVL KHLQGKLEQE ARVLVSSGQT EVLEQLKALQ MDITSLYNLK FQPPTLGPEP AARTPEGSPV HGSGPSKDSF GELSRATIRL LEELDRERCF LLNEIEKEEK EKLWYYSQLQ GLSKRLDELP HVETQFSMQM DLIRQQLEFE AQHIRSLMEE RFGTSDEMVQ RAQIRASRLE QIDKELLEAQ DRVQQTEPQA LLAVKSVPVD EDPETEVPTH PEDGTPQPGN SKVEVVFWLL SMLATRDQED TARTLLAMSS SPESCVAMRR SGCLPLLLQI LHGTEAAAGG RAGAPGAPGA KDARMRANAA LHNIVFSQPD QGLARKEMRV LHVLEQIRAY CETCWDWLQA RDGGPEGGGA GSAPIPIEPQ ICQATCAVMK LSFDEEYRRA MNELGGLQAV AELLQVDYEM HKMTRDPLNL ALRRYAGMTL TNLTFGDVAN KATLCARRGC MEAIVAQLAS DSEELHQVVS SILRNLSWRA DINSKKVLRE AGSVTALVQC VLRATKESTL KSVLSALWNL SAHSTENKAA ICQVDGALGF LVSTLTYKCQ SNSLAIIESG GGILRNVSSL VATREDYRQV LRDHNCLQTL LQHLTSHSLT IVSNACGTLW NLSARSARDQ ELLWDLGAVG MLRNLVHSKH KMIAMGSAAA LRNLLAHRPA KHQAAATAVS PGSCVPSLYV RKQRALEAEL DARHLAQALE HLEKQGPPAA EAATKKPLPP LRHLDGLAQD YASDSGCFDD DDAPSSLAAA AATGEPASPA ALSLFLGSPF LQGQALARTP PTRRGGKEAE KDTSGEAAVA AKAKAKLALA VARIDQLVED ISALHTSSDD SFSLSSGDPG QEAPREGRAQ SCSPCRGPEG GRREAGSRAH PLLRLKAAHA SLSNDSLNSG SASDGYCPRE HMLPCPLAAL ASRREDPRCG QPRPSRLDLD LPGCQAEPPA REATSADARV RTIKLSPTYQ HVPLLEGASR AGAEPLAGPG ISPGARKQAW LPADHLSKVP EKLAAAPLSV ASKALQKLAA QEGPLSLSRC SSLSSLSSAG RPGPSEGGDL DDSDSSLEGL EEAGPSEAEL DSTWRAPGAT SLPVAIPAPR RNRGRGLGVE DATPSSSSEN YVQETPLVLS RCSSVSSLGS FESPSIASSI PSEPCSGQGS GTISPSELPD SPGQTMPPSR SKTPPLAPAP QGPPEATQFS LQWESYVKRF LDIADCRERC RLPSELDAGS VRFTVEKPDE NFSCASSLSA LALHEHYVQQ DVELRLLPSA CPERGGGAGG AGLHFAGHRR REEGPAPTGS RPRGAADQEL ELLRECLGAA VPARLRKVAS ALVPGRRALP VPVYMLVPAP APAQEDDSCT DSAEGTPVNF SSAASLSDET LQGPPRDQPG GPAGRQRPTG RPTSARQAMG HRHKAGGAGR SAEQSRGAGK NRAGLELPLG RPPSAPADKD GSKPGRTRGD GALQSLCLTT PTEEAVYCFY GNDSDEEPPA AAPTPTHRRT SAIPRAFTRE RPQGRKEAPA PSKAAPAAPP PARTQPSLIA DETPPCYSLS SSASSLSEPE PSEPPAVHPR GREPAVTKDP GPGGGRDSSP SPRAAEELLQ RCISSALPRR RPPVSGLRRR KPRATRLDER PAEGSRERGE EAAGSDRASD LDSVEWRAIQ EGANSIVTWL HQAAAATREA SSESDSILSF VSGLSVGSTL QPPKHRKGRQ AEGEMGSARR PEKRGAASVK TSGSPRSPAG PEKPRGTQKT TPGVPAVLRG RTVIYVPSPA PRAQPKGTPG PRATPRKVAP PCLAQPAAPA KVPSPGQQRS RSLHRPAKTS ELATLSQPPR SATPPARLAK TPSSSSSQTS PASQPLPRKR PPVTQAAGAL PGPGASPVPK TPARTLLAKQ HKTQRSPVRI PFMQRPARRG PPPLARAVPE PGPRGRAGTE AGPGARGGRL GLVRVASALS SGSESSDRSG FRRQLTFIKE SPGLRRRRSE LSSAESAASA PQGASPRRGR PALPAVFLCS SRCEELRAAP RQGPAPARQR PPAARPSPGE RPARRTTSES PSRLPVRAPA ARPETVKRYA SLPHISVARR PDGAVPAAPA SADAARRSSD GEPRPLPRVA APGTTWRRIR DEDVPHILRS TLPATALPLR GSTPEDAPAG PPPRKTSDAV VQTEEVAAPK TNSSTSPSLE TREPPGAPAG GQLSLLGSDV DGPSLAKAPI SAPFVHEGLG VAVGGFPASR HGSPSRSARV PPFNYVPSPM VVAATTDSAA EKAPATASAT LLE //