ID WDR47_HUMAN Reviewed; 919 AA. AC O94967; A8MX09; Q5TYV7; Q5TYV8; Q5TYV9; Q8IXT7; Q8IYU9; DT 20-JUN-2001, integrated into UniProtKB/Swiss-Prot. DT 01-MAY-1999, sequence version 1. DT 10-FEB-2021, entry version 167. DE RecName: Full=WD repeat-containing protein 47; DE AltName: Full=Neuronal enriched MAP-interacting protein; DE Short=Nemitin; GN Name=WDR47; Synonyms=KIAA0893; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Brain; RX PubMed=10048485; DOI=10.1093/dnares/5.6.355; RA Nagase T., Ishikawa K., Suyama M., Kikuno R., Hirosawa M., Miyajima N., RA Tanaka A., Kotani H., Nomura N., Ohara O.; RT "Prediction of the coding sequences of unidentified human genes. XII. The RT complete sequences of 100 new cDNA clones from brain which code for large RT proteins in vitro."; RL DNA Res. 5:355-364(1998). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). RC TISSUE=Brain; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., RA Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., RA Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., RA Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., RA Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., RA Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., RA Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., RA Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., RA Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., RA Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., RA Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., RA Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., RA Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., RA Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., RA Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., RA Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., RA Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., RA Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., RA Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 4). RC TISSUE=Brain; RA Totoki Y., Toyoda A., Takeda T., Sakaki Y., Tanaka A., Yokoyama S.; RL Submitted (JUL-2006) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=16710414; DOI=10.1038/nature04727; RA Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., RA Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., RA Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K., RA Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., RA Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., RA Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., RA Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., RA Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., RA Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., RA Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., RA Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., RA Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., RA Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., RA Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., RA Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., RA Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., RA Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., RA Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., RA Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., RA McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., RA Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., RA Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., RA Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., RA Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., RA Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., RA White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., RA Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., RA Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., RA Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.; RT "The DNA sequence and biological annotation of human chromosome 1."; RL Nature 441:315-321(2006). RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 2 AND 3). RC TISSUE=Brain, and Testis; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [7] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18220336; DOI=10.1021/pr0705441; RA Cantin G.T., Yi W., Lu B., Park S.K., Xu T., Lee J.-D., Yates J.R. III; RT "Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient RT phosphoproteomic analysis."; RL J. Proteome Res. 7:1346-1351(2008). RN [8] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-285; SER-292 AND SER-297, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18669648; DOI=10.1073/pnas.0805139105; RA Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., RA Elledge S.J., Gygi S.P.; RT "A quantitative atlas of mitotic phosphorylation."; RL Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). RN [9] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-292, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=20068231; DOI=10.1126/scisignal.2000475; RA Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., RA Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.; RT "Quantitative phosphoproteomics reveals widespread full phosphorylation RT site occupancy during mitosis."; RL Sci. Signal. 3:RA3-RA3(2010). RN [10] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-312; SER-422 AND THR-542, AND RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). CC -!- SUBUNIT: Interacts with MAP1S (via WD repeats). {ECO:0000250}. CC -!- INTERACTION: CC O94967; P56279: TCL1A; NbExp=3; IntAct=EBI-723239, EBI-749995; CC -!- SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton {ECO:0000250}. CC Note=Localization along microtubules is mediated by MAP1S. CC {ECO:0000250}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=4; CC Name=1; CC IsoId=O94967-1; Sequence=Displayed; CC Name=2; CC IsoId=O94967-2; Sequence=VSP_012093; CC Name=3; CC IsoId=O94967-3; Sequence=VSP_035045; CC Name=4; CC IsoId=O94967-4; Sequence=VSP_046727, VSP_035045; CC -!- SEQUENCE CAUTION: CC Sequence=AK225781; Type=Frameshift; Evidence={ECO:0000305}; CC Sequence=BAA74916.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305}; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AB020700; BAA74916.2; ALT_INIT; mRNA. DR EMBL; AK289789; BAF82478.1; -; mRNA. DR EMBL; AK225781; -; NOT_ANNOTATED_CDS; mRNA. DR EMBL; BX679664; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; AL449266; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471122; EAW56350.1; -; Genomic_DNA. DR EMBL; CH471122; EAW56351.1; -; Genomic_DNA. DR EMBL; BC034964; AAH34964.1; -; mRNA. DR EMBL; BC039254; AAH39254.1; -; mRNA. DR CCDS; CCDS30787.1; -. [O94967-3] DR CCDS; CCDS44186.1; -. [O94967-4] DR CCDS; CCDS44187.1; -. [O94967-1] DR RefSeq; NP_001136022.1; NM_001142550.1. [O94967-4] DR RefSeq; NP_001136023.1; NM_001142551.1. [O94967-1] DR RefSeq; NP_055784.3; NM_014969.5. [O94967-3] DR RefSeq; XP_016856186.1; XM_017000697.1. [O94967-1] DR BioGRID; 116574; 21. DR IntAct; O94967; 15. DR MINT; O94967; -. DR STRING; 9606.ENSP00000383599; -. DR iPTMnet; O94967; -. DR PhosphoSitePlus; O94967; -. DR BioMuta; WDR47; -. DR EPD; O94967; -. DR jPOST; O94967; -. DR MassIVE; O94967; -. DR MaxQB; O94967; -. DR PaxDb; O94967; -. DR PeptideAtlas; O94967; -. DR PRIDE; O94967; -. DR ProteomicsDB; 2284; -. DR ProteomicsDB; 50587; -. [O94967-1] DR ProteomicsDB; 50588; -. [O94967-2] DR ProteomicsDB; 50589; -. [O94967-3] DR Antibodypedia; 33741; 44 antibodies. DR DNASU; 22911; -. DR Ensembl; ENST00000361054; ENSP00000354339; ENSG00000085433. [O94967-2] DR Ensembl; ENST00000369962; ENSP00000358979; ENSG00000085433. [O94967-1] DR Ensembl; ENST00000369965; ENSP00000358982; ENSG00000085433. [O94967-3] DR Ensembl; ENST00000400794; ENSP00000383599; ENSG00000085433. [O94967-4] DR GeneID; 22911; -. DR KEGG; hsa:22911; -. DR UCSC; uc001dwi.4; human. [O94967-1] DR CTD; 22911; -. DR DisGeNET; 22911; -. DR GeneCards; WDR47; -. DR HGNC; HGNC:29141; WDR47. DR HPA; ENSG00000085433; Tissue enhanced (brain). DR MIM; 615734; gene. DR neXtProt; NX_O94967; -. DR OpenTargets; ENSG00000085433; -. DR PharmGKB; PA134937302; -. DR VEuPathDB; HostDB:ENSG00000085433.15; -. DR eggNOG; KOG0641; Eukaryota. DR GeneTree; ENSGT00940000155561; -. DR HOGENOM; CLU_014985_0_0_1; -. DR InParanoid; O94967; -. DR OMA; ECHSIFE; -. DR OrthoDB; 245263at2759; -. DR PhylomeDB; O94967; -. DR TreeFam; TF312810; -. DR PathwayCommons; O94967; -. DR SignaLink; O94967; -. DR BioGRID-ORCS; 22911; 3 hits in 877 CRISPR screens. DR ChiTaRS; WDR47; human. DR GeneWiki; WDR47; -. DR GenomeRNAi; 22911; -. DR Pharos; O94967; Tdark. DR PRO; PR:O94967; -. DR Proteomes; UP000005640; Chromosome 1. DR RNAct; O94967; protein. DR Bgee; ENSG00000085433; Expressed in Ammon's horn and 244 other tissues. DR ExpressionAtlas; O94967; baseline and differential. DR Genevisible; O94967; HS. DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW. DR GO; GO:0005874; C:microtubule; IEA:UniProtKB-KW. DR GO; GO:0007275; P:multicellular organism development; IEA:UniProtKB-KW. DR Gene3D; 2.130.10.10; -; 2. DR InterPro; IPR024977; Apc4_WD40_dom. DR InterPro; IPR006595; CTLH_C. DR InterPro; IPR006594; LisH. DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf. DR InterPro; IPR001680; WD40_repeat. DR InterPro; IPR019775; WD40_repeat_CS. DR InterPro; IPR017986; WD40_repeat_dom. DR InterPro; IPR036322; WD40_repeat_dom_sf. DR InterPro; IPR040067; WDR47. DR PANTHER; PTHR19863; PTHR19863; 1. DR Pfam; PF12894; ANAPC4_WD40; 1. DR Pfam; PF00400; WD40; 2. DR SMART; SM00668; CTLH; 1. DR SMART; SM00667; LisH; 1. DR SMART; SM00320; WD40; 7. DR SUPFAM; SSF50978; SSF50978; 1. DR PROSITE; PS50897; CTLH; 1. DR PROSITE; PS50896; LISH; 1. DR PROSITE; PS00678; WD_REPEATS_1; 1. DR PROSITE; PS50082; WD_REPEATS_2; 5. DR PROSITE; PS50294; WD_REPEATS_REGION; 1. PE 1: Evidence at protein level; KW Alternative splicing; Cytoplasm; Cytoskeleton; Developmental protein; KW Microtubule; Phosphoprotein; Reference proteome; Repeat; WD repeat. FT CHAIN 1..919 FT /note="WD repeat-containing protein 47" FT /id="PRO_0000051397" FT DOMAIN 10..42 FT /note="LisH" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00126" FT DOMAIN 45..102 FT /note="CTLH" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00058" FT REPEAT 604..643 FT /note="WD 1" FT REPEAT 659..698 FT /note="WD 2" FT REPEAT 706..748 FT /note="WD 3" FT REPEAT 753..791 FT /note="WD 4" FT REPEAT 798..837 FT /note="WD 5" FT REPEAT 840..879 FT /note="WD 6" FT REPEAT 886..918 FT /note="WD 7" FT COMPBIAS 425..474 FT /note="Gln-rich" FT MOD_RES 285 FT /note="Phosphothreonine" FT /evidence="ECO:0000244|PubMed:18669648" FT MOD_RES 289 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q8CGF6" FT MOD_RES 292 FT /note="Phosphoserine" FT /evidence="ECO:0000244|PubMed:18669648, FT ECO:0000244|PubMed:20068231" FT MOD_RES 297 FT /note="Phosphoserine" FT /evidence="ECO:0000244|PubMed:18669648" FT MOD_RES 312 FT /note="Phosphoserine" FT /evidence="ECO:0000244|PubMed:23186163" FT MOD_RES 422 FT /note="Phosphoserine" FT /evidence="ECO:0000244|PubMed:23186163" FT MOD_RES 542 FT /note="Phosphothreonine" FT /evidence="ECO:0000244|PubMed:23186163" FT VAR_SEQ 54..81 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:15489334" FT /id="VSP_012093" FT VAR_SEQ 109 FT /note="H -> HVRFLFLK (in isoform 4)" FT /evidence="ECO:0000303|Ref.3" FT /id="VSP_046727" FT VAR_SEQ 377 FT /note="R -> RS (in isoform 3 and isoform 4)" FT /evidence="ECO:0000303|PubMed:14702039, FT ECO:0000303|PubMed:15489334, ECO:0000303|Ref.3" FT /id="VSP_035045" FT CONFLICT 298 FT /note="P -> Q (in Ref. 6; AAH39254)" FT /evidence="ECO:0000305" FT CONFLICT 369 FT /note="S -> C (in Ref. 6; AAH39254)" FT /evidence="ECO:0000305" FT CONFLICT 698 FT /note="T -> TVS (in Ref. 6; AAH39254)" FT /evidence="ECO:0000305" FT CONFLICT 779 FT /note="R -> G (in Ref. 6; AAH34964)" FT /evidence="ECO:0000305" FT CONFLICT 789 FT /note="V -> A (in Ref. 6; AAH34964)" FT /evidence="ECO:0000305" SQ SEQUENCE 919 AA; 101949 MW; 2BC571E17DB67166 CRC64; MTAEETVNVK EVEIIKLILD FLNSKKLHIS MLALEKESGV INGLFSDDML FLRQLILDGQ WDEVLQFIQP LECMEKFDKK RFRYIILKQK FLEALCVNNA MSAEDEPQHL EFTMQEAVQC LHALEEYCPS KDDYSKLCLL LTLPRLTNHA EFKDWNPSTA RVHCFEEACV MVAEFIPADR KLSEAGFKAS NNRLFQLVMK GLLYECCVEF CQSKATGEEI TESEVLLGID LLCGNGCDDL DLSLLSWLQN LPSSVFSCAF EQKMLNIHVD KLLKPTKAAY ADLLTPLISK LSPYPSSPMR RPQSADAYMT RSLNPALDGL TCGLTSHDKR ISDLGNKTSP MSHSFANFHY PGVQNLSRSL MLENTECHSI YEESPERDTP VDAQRPIGSE ILGQSSVSEK EPANGAQNPG PAKQEKNELR DSTEQFQEYY RQRLRYQQHL EQKEQQRQIY QQMLLEGGVN QEDGPDQQQN LTEQFLNRSI QKLGELNIGM DGLGNEVSAL NQQCNGSKGN GSNGSSVTSF TTPPQDSSQR LTHDASNIHT STPRNPGSTN HIPFLEESPC GSQISSEHSV IKPPLGDSPG SLSRSKGEED DKSKKQFVCI NILEDTQAVR AVAFHPAGGL YAVGSNSKTL RVCAYPDVID PSAHETPKQP VVRFKRNKHH KGSIYCVAWS PCGQLLATGS NDKYVKVLPF NAETCNATGP DLEFSMHDGT IRDLAFMEGP ESGGAILISA GAGDCNIYTT DCQRGQGLHA LSGHTGHILA LYTWSGWMIA SGSQDKTVRF WDLRVPSCVR VVGTTFHGTG SAVASVAVDP SGRLLATGQE DSSCMLYDIR GGRMVQSYHP HSSDVRSVRF SPGAHYLLTG SYDMKIKVTD LQGDLTKQLP IMVVGEHKDK VIQCRWHTQD LSFLSSSADR TVTLWTYNG //