ID TRI13_HUMAN Reviewed; 407 AA. AC O60858; B2RB49; Q5UBW0; Q5W0U8; Q5W0U9; Q9BQ47; Q9C021; DT 01-DEC-2000, integrated into UniProtKB/Swiss-Prot. DT 19-JUL-2005, sequence version 2. DT 08-FEB-2011, entry version 106. DE RecName: Full=E3 ubiquitin-protein ligase TRIM13; DE EC=6.3.2.-; DE AltName: Full=B-cell chronic lymphocytic leukemia tumor suppressor Leu5; DE AltName: Full=Leukemia-associated protein 5; DE AltName: Full=Putative tumor suppressor RFP2; DE AltName: Full=RING finger protein 77; DE AltName: Full=Ret finger protein 2; DE AltName: Full=Tripartite motif-containing protein 13; GN Name=TRIM13; Synonyms=LEU5, RFP2, RNF77; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; OC Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; OC Catarrhini; Hominidae; Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), AND VARIANT THR-355. RC TISSUE=Leukemia; RX MEDLINE=98258969; PubMed=9599022; DOI=10.1016/S0014-5793(98)00357-3; RA Kapanadze B., Kashuba V., Baranova A., Rasool O., van Everdink W.J., RA Liu Y., Syomov A., Corcoran M., Poltaraus A., Brodyansky V., RA Syomova N., Kazakov A., Ibbotson R., van den Berg A., Gizatullin R., RA Fedorova L., Sulimova G., Zelenin A., Deaven L., Lehrach H., RA Grander D., Buys C., Oscier D., Zabarovsky E.R., Einhorn S., RA Yankovsky N.; RT "A cosmid and cDNA fine physical map of a human chromosome 13q14 RT region frequently lost in B-cell chronic lymphocytic leukemia and RT identification of a new putative tumor suppressor gene, Leu5."; RL FEBS Lett. 426:266-270(1998). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND ALTERNATIVE SPLICING (ISOFORM RP 1). RX MEDLINE=21164809; PubMed=11264177; DOI=10.1182/blood.V97.7.2098; RA Migliazza A., Bosch F., Komatsu H., Cayanis E., Martinotti S., RA Toniato E., Guccione E., Qu X., Chien M., Murty V.V., Gaidano G., RA Inghirami G., Zhang P., Fischer S., Kalachikov S.M., Russo J., RA Edelman I., Efstratiadis A., Dalla-Favera R.; RT "Nucleotide sequence, transcription map, and mutation analysis of the RT 13q14 chromosomal region deleted in B-cell chronic lymphocytic RT leukemia."; RL Blood 97:2098-2104(2001). RN [3] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1 AND 2), AND VARIANT THR-355. RX MEDLINE=21231161; PubMed=11331580; DOI=10.1093/emboj/20.9.2140; RA Reymond A., Meroni G., Fantozzi A., Merla G., Cairo S., Luzi L., RA Riganelli D., Zanaria E., Messali S., Cainarca S., Guffanti A., RA Minucci S., Pelicci P.G., Ballabio A.; RT "The tripartite motif family identifies cell compartments."; RL EMBO J. 20:2140-2151(2001). RN [4] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RX PubMed=14499696; DOI=10.1016/S0165-4608(03)00126-2; RA van Everdink W.J., Baranova A., Lummen C., Tyazhelova T., Looman M.W., RA Ivanov D., Verlind E., Pestova A., Faber H., van der Veen A.Y., RA Yankovsky N., Vellenga E., Buys C.H.; RT "RFP2, c13ORF1, and FAM10A4 are the most likely tumor suppressor gene RT candidates for B-cell chronic lymphocytic leukemia."; RL Cancer Genet. Cytogenet. 146:48-57(2003). RN [5] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1), AND VARIANT RP THR-355. RA Baranova A.V., Sangfelt O., Ivanov D.V., Borodina T.A., RA Yankovsky N.K.; RT "RFP2 putative tumor suppressor gene: genomic organization, multiple RT mRNA isoforms and evaluation as a B-cell chronic lymphocytic leukaemia RT candidate."; RL Submitted (MAR-2000) to the EMBL/GenBank/DDBJ databases. RN [6] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RA Corcoran M.M., Hammarsund M., Grander D., Oscier D., Kapanadze B., RA Einhorn S., Sangfelt O.; RL Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases. RN [7] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 3). RA Corcoran M.M., Lerner M., Sangfelt O.; RT "Alternative isoform of candidate tumor suppressor RFP2."; RL Submitted (SEP-2004) to the EMBL/GenBank/DDBJ databases. RN [8] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Brain; RX PubMed=14702039; DOI=10.1038/ng1285; RA Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., RA Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., RA Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S., RA Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., RA Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., RA Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., RA Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., RA Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., RA Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., RA Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., RA Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., RA Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., RA Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., RA Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., RA Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., RA Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., RA Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., RA Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., RA Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., RA Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., RA Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., RA Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., RA Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., RA Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., RA Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., RA Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., RA Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., RA Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.; RT "Complete sequencing and characterization of 21,243 full-length human RT cDNAs."; RL Nat. Genet. 36:40-45(2004). RN [9] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], AND VARIANT THR-355. RX PubMed=15057823; DOI=10.1038/nature02379; RA Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., RA Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., RA Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., RA Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T., RA Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., RA Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., RA Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., RA Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., RA Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., RA Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., RA Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., RA Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., RA Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., RA Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., RA Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., RA King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., RA Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., RA Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., RA Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., RA Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., RA Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., RA Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., RA Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., RA Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., RA Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.; RT "The DNA sequence and analysis of human chromosome 13."; RL Nature 428:522-528(2004). RN [10] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., RA Mobarry C.M., Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., RA Flanigan M.J., Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., RA Hannenhalli S., Turner R., Yooseph S., Lu F., Nusskern D.R., RA Shue B.C., Zheng X.H., Zhong F., Delcher A.L., Huson D.H., RA Kravitz S.A., Mouchard L., Reinert K., Remington K.A., Clark A.G., RA Waterman M.S., Eichler E.E., Adams M.D., Hunkapiller M.W., Myers E.W., RA Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [11] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC TISSUE=Blood, and Lung; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA RT project: the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [12] RP FUNCTION AS AN E3 UBIQUITIN LIGASE, AUTOUBIQUITINATION, SUBCELLULAR RP LOCATION, MUTAGENESIS OF CYS-13, MASS SPECTROMETRY, AND INTERACTION RP WITH VCP. RX PubMed=17314412; DOI=10.1091/mbc.E06-03-0248; RA Lerner M., Corcoran M., Cepeda D., Nielsen M.L., Zubarev R., RA Ponten F., Uhlen M., Hober S., Grander D., Sangfelt O.; RT "The RBCC gene RFP2 (Leu5) encodes a novel transmembrane E3 ubiquitin RT ligase involved in ERAD."; RL Mol. Biol. Cell 18:1670-1682(2007). CC -!- FUNCTION: E3 ubiquitin ligase involved in the retrotranslocation CC and turnover of membrane and secretory proteins from the ER CC through a set of processes named ER-associated degradation (ERAD). CC This process acts on misfolded proteins as well as in the CC regulated degradation of correctly folded proteins. CC -!- PATHWAY: Protein modification; protein ubiquitination. CC -!- SUBUNIT: Interacts (via C-terminal domain) with VCP. CC -!- SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass CC membrane protein. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=3; CC Name=1; Synonyms=Alpha; CC IsoId=O60858-1; Sequence=Displayed; CC Name=2; Synonyms=Beta; CC IsoId=O60858-2; Sequence=VSP_005746, VSP_005747; CC Name=3; CC IsoId=O60858-3; Sequence=VSP_038142; CC -!- DOMAIN: The RING-type zinc finger is required for auto- CC polyubiquitination. CC -!- DOMAIN: The C-terminal domain transmembrane domain is CC indispensable for the localization to the ER. CC -!- PTM: Auto-ubiquitinated; which leads to proteasomal degradation. CC -!- MISCELLANEOUS: Located on chromosome 13 within the minimal CC deletion region for B-cell chronic lymphocytic leukemia. CC -!- SIMILARITY: Belongs to the TRIM/RBCC family. CC -!- SIMILARITY: Contains 1 B box-type zinc finger. CC -!- SIMILARITY: Contains 1 RING-type zinc finger. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AJ224819; CAA12136.1; -; mRNA. DR EMBL; AF279660; AAK13059.1; -; Genomic_DNA. DR EMBL; AF220127; AAG53500.1; -; mRNA. DR EMBL; AF220128; AAG53501.1; -; mRNA. DR EMBL; AY191002; AAO38979.1; -; mRNA. DR EMBL; AF241849; AAK51624.1; -; Genomic_DNA. DR EMBL; AF241850; AAF91315.1; -; mRNA. DR EMBL; AY455758; AAR31110.1; -; mRNA. DR EMBL; AY764035; AAV51406.1; -; mRNA. DR EMBL; AK314496; BAG37096.1; -; mRNA. DR EMBL; AL137060; CAC43391.1; -; Genomic_DNA. DR EMBL; AL137060; CAH72825.1; -; Genomic_DNA. DR EMBL; AL137060; CAH72826.1; -; Genomic_DNA. DR EMBL; CH471075; EAX08844.1; -; Genomic_DNA. DR EMBL; CH471075; EAX08845.1; -; Genomic_DNA. DR EMBL; BC003579; AAH03579.1; -; mRNA. DR EMBL; BC063407; AAH63407.1; -; mRNA. DR IPI; IPI00477161; -. DR IPI; IPI00607858; -. DR IPI; IPI00944555; -. DR RefSeq; NP_001007279.1; NM_001007278.1. DR RefSeq; NP_005789.2; NM_005798.3. DR RefSeq; NP_434698.1; NM_052811.2. DR RefSeq; NP_998755.1; NM_213590.1. DR UniGene; Hs.436922; -. DR ProteinModelPortal; O60858; -. DR SMR; O60858; 1-65, 93-131. DR STRING; O60858; -. DR PRIDE; O60858; -. DR Ensembl; ENST00000298772; ENSP00000298772; ENSG00000204977. DR Ensembl; ENST00000356017; ENSP00000348299; ENSG00000204977. DR Ensembl; ENST00000378182; ENSP00000367424; ENSG00000204977. DR Ensembl; ENST00000378183; ENSP00000367425; ENSG00000204977. DR Ensembl; ENST00000420995; ENSP00000412943; ENSG00000204977. DR Ensembl; ENST00000442421; ENSP00000404586; ENSG00000204977. DR Ensembl; ENST00000457662; ENSP00000399206; ENSG00000204977. DR GeneID; 10206; -. DR KEGG; hsa:10206; -. DR UCSC; uc001vdq.1; human. DR CTD; 10206; -. DR GeneCards; GC13P050570; -. DR H-InvDB; HIX0011323; -. DR HGNC; HGNC:9976; TRIM13. DR HPA; HPA000367; -. DR MIM; 605661; gene. DR neXtProt; NX_O60858; -. DR PharmGKB; PA162406947; -. DR eggNOG; prNOG11929; -. DR GeneTree; ENSGT00560000076722; -. DR GeneTree; EPGT00070000033940; -. DR HOVERGEN; HBG056536; -. DR InParanoid; O60858; -. DR OMA; QPLNIFC; -. DR PhylomeDB; O60858; -. DR NextBio; 38634; -. DR ArrayExpress; O60858; -. DR Bgee; O60858; -. DR CleanEx; HS_TRIM13; -. DR Genevestigator; O60858; -. DR GermOnline; ENSG00000204977; Homo sapiens. DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB. DR GO; GO:0005789; C:endoplasmic reticulum membrane; IDA:UniProtKB. DR GO; GO:0016021; C:integral to membrane; IEA:UniProtKB-KW. DR GO; GO:0005515; F:protein binding; IPI:UniProtKB. DR GO; GO:0004871; F:signal transducer activity; IMP:UniProtKB. DR GO; GO:0004842; F:ubiquitin-protein ligase activity; IDA:UniProtKB. DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro. DR GO; GO:0009653; P:anatomical structure morphogenesis; TAS:ProtInc. DR GO; GO:0030433; P:ER-associated protein catabolic process; IDA:UniProtKB. DR GO; GO:0043123; P:positive regulation of I-kappaB kinase/NF-kappaB cascade; IMP:UniProtKB. DR GO; GO:0051865; P:protein autoubiquitination; IDA:UniProtKB. DR InterPro; IPR000315; Znf_B-box. DR InterPro; IPR018957; Znf_C3HC4_RING-type. DR InterPro; IPR001841; Znf_RING. DR InterPro; IPR013083; Znf_RING/FYVE/PHD. DR InterPro; IPR017907; Znf_RING_CS. DR Gene3D; G3DSA:3.30.40.10; Znf_RING/FYVE/PHD; 1. DR Pfam; PF00643; zf-B_box; 1. DR Pfam; PF00097; zf-C3HC4; 1. DR SMART; SM00336; BBOX; 1. DR SMART; SM00184; RING; 1. DR PROSITE; PS50119; ZF_BBOX; 1. DR PROSITE; PS00518; ZF_RING_1; 1. DR PROSITE; PS50089; ZF_RING_2; 1. PE 1: Evidence at protein level; KW Alternative splicing; Coiled coil; Complete proteome; KW Endoplasmic reticulum; Ligase; Membrane; Metal-binding; Polymorphism; KW Transmembrane; Transmembrane helix; Ubl conjugation; KW Ubl conjugation pathway; Zinc; Zinc-finger. FT CHAIN 1 407 E3 ubiquitin-protein ligase TRIM13. FT /FTId=PRO_0000056028. FT TRANSMEM 317 337 Helical; (Potential). FT ZN_FING 10 58 RING-type. FT ZN_FING 89 131 B box-type. FT COILED 172 200 Potential. FT VAR_SEQ 1 1 M -> MDVM (in isoform 3). FT /FTId=VSP_038142. FT VAR_SEQ 175 175 L -> D (in isoform 2). FT /FTId=VSP_005746. FT VAR_SEQ 176 407 Missing (in isoform 2). FT /FTId=VSP_005747. FT VARIANT 355 355 S -> T (in dbSNP:rs1056543). FT /FTId=VAR_013512. FT MUTAGEN 13 13 C->A: Protein more stable than the wild- FT type. SQ SEQUENCE 407 AA; 46988 MW; 94B624345124AEBF CRC64; MELLEEDLTC PICCSLFDDP RVLPCSHNFC KKCLEGILEG SVRNSLWRPA PFKCPTCRKE TSATGINSLQ VNYSLKGIVE KYNKIKISPK MPVCKGHLGQ PLNIFCLTDM QLICGICATR GEHTKHVFCS IEDAYAQERD AFESLFQSFE TWRRGDALSR LDTLETSKRK SLQLLTKDSD KVKEFFEKLQ HTLDQKKNEI LSDFETMKLA VMQAYDPEIN KLNTILQEQR MAFNIAEAFK DVSEPIVFLQ QMQEFREKIK VIKETPLPPS NLPASPLMKN FDTSQWEDIK LVDVDKLSLP QDTGTFISKI PWSFYKLFLL ILLLGLVIVF GPTMFLEWSL FDDLATWKGC LSNFSSYLTK TADFIEQSVF YWEQVTDGFF IFNERFKNFT LVVLNNVAEF VCKYKLL //