ID   PP399_ARATH             Reviewed;        1038 AA.
AC   O04647;
DT   10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT   10-FEB-2009, sequence version 2.
DT   12-APR-2017, entry version 98.
DE   RecName: Full=Pentatricopeptide repeat-containing protein At5g27270;
DE   AltName: Full=Protein EMBRYO DEFECTIVE 976;
GN   Name=EMB976; OrderedLocusNames=At5g27270;
GN   ORFNames=A_TM021B04.10, F21A20.6, T21B4.180;
OS   Arabidopsis thaliana (Mouse-ear cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae;
OC   Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae;
OC   Arabidopsis.
OX   NCBI_TaxID=3702;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Columbia;
RX   PubMed=11130714; DOI=10.1038/35048507;
RA   Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA   Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K.,
RA   Kohara M., Matsumoto M., Matsuno A., Muraki A., Nakayama S.,
RA   Nakazaki N., Naruo K., Okumura S., Shinpo S., Takeuchi C., Wada T.,
RA   Watanabe A., Yamada M., Yasuda M., Sato S., de la Bastide M.,
RA   Huang E., Spiegel L., Gnoj L., O'Shaughnessy A., Preston R.,
RA   Habermann K., Murray J., Johnson D., Rohlfing T., Nelson J.,
RA   Stoneking T., Pepin K., Spieth J., Sekhon M., Armstrong J., Becker M.,
RA   Belter E., Cordum H., Cordes M., Courtney L., Courtney W., Dante M.,
RA   Du H., Edwards J., Fryman J., Haakensen B., Lamar E., Latreille P.,
RA   Leonard S., Meyer R., Mulvaney E., Ozersky P., Riley A., Strowmatt C.,
RA   Wagner-McPherson C., Wollam A., Yoakum M., Bell M., Dedhia N.,
RA   Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D., Baker J.,
RA   Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA   Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA   Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA   Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S.,
RA   Langham S.-A., McCullagh B., Robben J., Grymonprez B., Zimmermann W.,
RA   Ramsperger U., Wedler H., Balke K., Wedler E., Peters S.,
RA   van Staveren M., Dirkse W., Mooijman P., Klein Lankhorst R.,
RA   Weitzenegger T., Bothe G., Rose M., Hauf J., Berneiser S., Hempel S.,
RA   Feldpausch M., Lamberth S., Villarroel R., Gielen J., Ardiles W.,
RA   Bents O., Lemcke K., Kolesov G., Mayer K.F.X., Rudd S., Schoof H.,
RA   Schueller C., Zaccaria P., Mewes H.-W., Bevan M., Fransz P.F.;
RT   "Sequence and analysis of chromosome 5 of the plant Arabidopsis
RT   thaliana.";
RL   Nature 408:823-826(2000).
RN   [2]
RP   GENOME REANNOTATION.
RC   STRAIN=cv. Columbia;
RG   The Arabidopsis Information Portal (Araport);
RL   Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   GENE FAMILY.
RX   PubMed=15269332; DOI=10.1105/tpc.104.022236;
RA   Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C.,
RA   Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A.,
RA   Le Ret M., Martin-Magniette M.-L., Mireau H., Peeters N., Renou J.-P.,
RA   Szurek B., Taconnat L., Small I.;
RT   "Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins
RT   reveals their essential role in organelle biogenesis.";
RL   Plant Cell 16:2089-2103(2004).
CC   -!- SIMILARITY: Belongs to the PPR family. P subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAB61077.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC   -!- WEB RESOURCE: Name=Arabidopsis PPR Protein Database;
CC       URL="http://www.plantenergy.uwa.edu.au/applications/ppr/ppr.php";
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DR   EMBL; AC007123; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AF007271; AAB61077.1; ALT_SEQ; Genomic_DNA.
DR   EMBL; CP002688; AED93665.1; -; Genomic_DNA.
DR   PIR; T01796; T01796.
DR   RefSeq; NP_198079.1; NM_122609.3.
DR   UniGene; At.30814; -.
DR   ProteinModelPortal; O04647; -.
DR   STRING; 3702.AT5G27270.1; -.
DR   PaxDb; O04647; -.
DR   PRIDE; O04647; -.
DR   EnsemblPlants; AT5G27270.1; AT5G27270.1; AT5G27270.
DR   GeneID; 832785; -.
DR   Gramene; AT5G27270.1; AT5G27270.1; AT5G27270.
DR   KEGG; ath:AT5G27270; -.
DR   Araport; AT5G27270; -.
DR   TAIR; locus:2181286; AT5G27270.
DR   eggNOG; KOG4197; Eukaryota.
DR   eggNOG; ENOG410Z7Z7; LUCA.
DR   HOGENOM; HOG000084168; -.
DR   InParanoid; O04647; -.
DR   OMA; AMTPKWI; -.
DR   OrthoDB; EOG093600XZ; -.
DR   PhylomeDB; O04647; -.
DR   PRO; PR:O04647; -.
DR   Proteomes; UP000006548; Chromosome 5.
DR   Genevisible; O04647; AT.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR   GO; GO:0004519; F:endonuclease activity; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; -; 2.
DR   InterPro; IPR002885; Pentatricopeptide_repeat.
DR   InterPro; IPR011990; TPR-like_helical_dom.
DR   Pfam; PF01535; PPR; 6.
DR   Pfam; PF13041; PPR_2; 4.
DR   Pfam; PF13812; PPR_3; 1.
DR   SUPFAM; SSF48452; SSF48452; 1.
DR   TIGRFAMs; TIGR00756; PPR; 10.
DR   PROSITE; PS51375; PPR; 22.
PE   2: Evidence at transcript level;
KW   Complete proteome; Reference proteome; Repeat.
FT   CHAIN         1   1038       Pentatricopeptide repeat-containing
FT                                protein At5g27270.
FT                                /FTId=PRO_0000363536.
FT   REPEAT      187    221       PPR 1.
FT   REPEAT      222    256       PPR 2.
FT   REPEAT      257    291       PPR 3.
FT   REPEAT      292    326       PPR 4.
FT   REPEAT      327    361       PPR 5.
FT   REPEAT      362    396       PPR 6.
FT   REPEAT      397    431       PPR 7.
FT   REPEAT      432    466       PPR 8.
FT   REPEAT      467    501       PPR 9.
FT   REPEAT      502    535       PPR 10.
FT   REPEAT      536    570       PPR 11.
FT   REPEAT      601    631       PPR 12.
FT   REPEAT      634    668       PPR 13.
FT   REPEAT      669    699       PPR 14.
FT   REPEAT      703    737       PPR 15.
FT   REPEAT      738    772       PPR 16.
FT   REPEAT      773    807       PPR 17.
FT   REPEAT      808    842       PPR 18.
FT   REPEAT      843    877       PPR 19.
FT   REPEAT      878    912       PPR 20.
FT   REPEAT      913    947       PPR 21.
FT   REPEAT      948    982       PPR 22.
FT   REPEAT      983   1017       PPR 23.
SQ   SEQUENCE   1038 AA;  117451 MW;  D67A41F703300B75 CRC64;
     MKSDFLTSTT HFNPSIFLPK IPSRNSRISI KSSSSSSKVR PDPWSLSDGN PEKPKPRYER
     PKHPLSDDDA RRIIKKKAQY LSTLRRNQGS QAMTPKWIKR TPEQMVQYLE DDRNGQMYGK
     HVVAAIKTVR GLSQRRQGSD DMRFVMSSFV AKLSFRDMCV VLKEQRGWRQ VRDFFSWMKL
     QLSYRPSVVV YTIVLRLYGQ VGKIKMAEET FLEMLEVGCE PDAVACGTML CTYARWGRHS
     AMLTFYKAVQ ERRILLSTSV YNFMLSSLQK KSFHGKVIDL WLEMVEEGVP PNEFTYTLVV
     SSYAKQGFKE EALKAFGEMK SLGFVPEEVT YSSVISLSVK AGDWEKAIGL YEDMRSQGIV
     PSNYTCATML SLYYKTENYP KALSLFADME RNKIPADEVI RGLIIRIYGK LGLFHDAQSM
     FEETERLNLL ADEKTYLAMS QVHLNSGNVV KALDVIEMMK TRDIPLSRFA YIVMLQCYAK
     IQNVDCAEEA FRALSKTGLP DASSCNDMLN LYTRLNLGEK AKGFIKQIMV DQVHFDIELY
     KTAMRVYCKE GMVAEAQDLI VKMGREARVK DNRFVQTLAE SMHIVNKHDK HEAVLNVSQL
     DVMALGLMLN LRLKEGNLNE TKAILNLMFK TDLGSSAVNR VISSFVREGD VSKAEMIADI
     IIRLGLRMEE ETIATLIAVY GRQHKLKEAK RLYLAAGESK TPGKSVIRSM IDAYVRCGWL
     EDAYGLFMES AEKGCDPGAV TISILVNALT NRGKHREAEH ISRTCLEKNI ELDTVGYNTL
     IKAMLEAGKL QCASEIYERM HTSGVPCSIQ TYNTMISVYG RGLQLDKAIE IFSNARRSGL
     YLDEKIYTNM IMHYGKGGKM SEALSLFSEM QKKGIKPGTP SYNMMVKICA TSRLHHEVDE
     LLQAMERNGR CTDLSTYLTL IQVYAESSQF AEAEKTITLV KEKGIPLSHS HFSSLLSALV
     KAGMMEEAER TYCKMSEAGI SPDSACKRTI LKGYMTCGDA EKGILFYEKM IRSSVEDDRF
     VSSVVEDLYK AVGKEQDV
//