ID   N6V3M1_9GAMM            Unreviewed;       472 AA.
AC   N6V3M1;
DT   26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT   26-JUN-2013, sequence version 1.
DT   27-MAR-2024, entry version 48.
DE   SubName: Full=Sigma-54 dependent transcriptional regulator/sensory box protein {ECO:0000313|EMBL:ENN99294.1};
GN   ORFNames=J139_07852 {ECO:0000313|EMBL:ENN99294.1};
OS   Pseudoalteromonas agarivorans S816.
OC   Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
OX   NCBI_TaxID=1307437 {ECO:0000313|EMBL:ENN99294.1, ECO:0000313|Proteomes:UP000012320};
RN   [1] {ECO:0000313|EMBL:ENN99294.1, ECO:0000313|Proteomes:UP000012320}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S816 {ECO:0000313|EMBL:ENN99294.1,
RC   ECO:0000313|Proteomes:UP000012320};
RA   Vynne N.G., Gram L.;
RT   "Comparative genomics of marine Pseudoalteromonads.";
RL   Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:ENN99294.1}.
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DR   EMBL; APME01000017; ENN99294.1; -; Genomic_DNA.
DR   RefSeq; WP_004587243.1; NZ_APME01000017.1.
DR   AlphaFoldDB; N6V3M1; -.
DR   PATRIC; fig|1307437.4.peg.1603; -.
DR   eggNOG; COG3829; Bacteria.
DR   Proteomes; UP000012320; Unassembled WGS sequence.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00009; AAA; 1.
DR   CDD; cd00130; PAS; 1.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR001610; PAC.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR000700; PAS-assoc_C.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   NCBIfam; TIGR00229; sensory_box; 1.
DR   PANTHER; PTHR32071:SF121; PTS-DEPENDENT DIHYDROXYACETONE KINASE OPERON REGULATORY PROTEIN-RELATED; 1.
DR   PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR   Pfam; PF00989; PAS; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00086; PAC; 1.
DR   SMART; SM00091; PAS; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1.
DR   PROSITE; PS50113; PAC; 1.
DR   PROSITE; PS50112; PAS; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          12..57
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   DOMAIN          83..135
FT                   /note="PAC"
FT                   /evidence="ECO:0000259|PROSITE:PS50113"
FT   DOMAIN          167..396
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
FT   COILED          126..157
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   472 AA;  53141 MW;  13DA53DD9D5A57FE CRC64;
     MIKQFLNDPK LLLNAVGEGI YGFDLSGNAV FVNPAAERMT GWQAQELLGK KIHQYHHHSH
     ADGSPYPADE CQIYCTMFDG KRREVKNEVF WRKDGTSFAV EYTSTPVYRQ GELIGAVAVF
     RDISAQQQTQ NELKQALEQV KHLSEQLQDE NNYLIAELNE DWQDSGLVGQ SHVFQAMLAQ
     IKLVSETDST VLILGENGTG KELVARNLHR LSKRSNQAFI KVNCSAFTPS LLESELFGHE
     RGAFTGANER RKGRFELADK GTLFLDEVAE LPLEAQSKLL RVLQEQEFER VGGSTTLKVN
     IRVLAATNRD LWQMVQKGTF RIDLYYRLNV FPIKVPALKE RKEDIPYLCT NLITQLNKRL
     AKQIKGVSKK AISQLQAYDW PGNIRELQNV LEREAILTKH TVLKLSQPLH GDASTAVNTS
     LTLAEAQKQH IIAVLELSQW QISGDKGAAC KLGLPESTLR SKMRKLGISK KT
//