ID N6V3M1_9GAMM Unreviewed; 472 AA. AC N6V3M1; DT 26-JUN-2013, integrated into UniProtKB/TrEMBL. DT 26-JUN-2013, sequence version 1. DT 24-JAN-2024, entry version 47. DE SubName: Full=Sigma-54 dependent transcriptional regulator/sensory box protein {ECO:0000313|EMBL:ENN99294.1}; GN ORFNames=J139_07852 {ECO:0000313|EMBL:ENN99294.1}; OS Pseudoalteromonas agarivorans S816. OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; OC Pseudoalteromonadaceae; Pseudoalteromonas. OX NCBI_TaxID=1307437 {ECO:0000313|EMBL:ENN99294.1, ECO:0000313|Proteomes:UP000012320}; RN [1] {ECO:0000313|EMBL:ENN99294.1, ECO:0000313|Proteomes:UP000012320} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=S816 {ECO:0000313|EMBL:ENN99294.1, RC ECO:0000313|Proteomes:UP000012320}; RA Vynne N.G., Gram L.; RT "Comparative genomics of marine Pseudoalteromonads."; RL Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases. CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ CC whole genome shotgun (WGS) entry which is preliminary data. CC {ECO:0000313|EMBL:ENN99294.1}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; APME01000017; ENN99294.1; -; Genomic_DNA. DR RefSeq; WP_004587243.1; NZ_APME01000017.1. DR AlphaFoldDB; N6V3M1; -. DR PATRIC; fig|1307437.4.peg.1603; -. DR eggNOG; COG3829; Bacteria. DR Proteomes; UP000012320; Unassembled WGS sequence. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro. DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW. DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro. DR CDD; cd00009; AAA; 1. DR CDD; cd00130; PAS; 1. DR Gene3D; 1.10.8.60; -; 1. DR Gene3D; 1.10.10.60; Homeodomain-like; 1. DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1. DR Gene3D; 3.30.450.20; PAS domain; 1. DR InterPro; IPR003593; AAA+_ATPase. DR InterPro; IPR009057; Homeobox-like_sf. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR001610; PAC. DR InterPro; IPR000014; PAS. DR InterPro; IPR000700; PAS-assoc_C. DR InterPro; IPR035965; PAS-like_dom_sf. DR InterPro; IPR013767; PAS_fold. DR InterPro; IPR002078; Sigma_54_int. DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2. DR InterPro; IPR025944; Sigma_54_int_dom_CS. DR NCBIfam; TIGR00229; sensory_box; 1. DR PANTHER; PTHR32071:SF114; DNA-BINDING TRANSCRIPTIONAL ACTIVATOR HYFR-RELATED; 1. DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1. DR Pfam; PF00989; PAS; 1. DR Pfam; PF00158; Sigma54_activat; 1. DR SMART; SM00382; AAA; 1. DR SMART; SM00086; PAC; 1. DR SMART; SM00091; PAS; 1. DR SUPFAM; SSF46689; Homeodomain-like; 1. DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1. DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 1. DR PROSITE; PS50113; PAC; 1. DR PROSITE; PS50112; PAS; 1. DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1. DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1. DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|ARBA:ARBA00022840}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW DNA-binding {ECO:0000256|ARBA:ARBA00023125}; KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}; KW Transcription {ECO:0000256|ARBA:ARBA00023163}; KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}. FT DOMAIN 12..57 FT /note="PAS" FT /evidence="ECO:0000259|PROSITE:PS50112" FT DOMAIN 83..135 FT /note="PAC" FT /evidence="ECO:0000259|PROSITE:PS50113" FT DOMAIN 167..396 FT /note="Sigma-54 factor interaction" FT /evidence="ECO:0000259|PROSITE:PS50045" FT COILED 126..157 FT /evidence="ECO:0000256|SAM:Coils" SQ SEQUENCE 472 AA; 53141 MW; 13DA53DD9D5A57FE CRC64; MIKQFLNDPK LLLNAVGEGI YGFDLSGNAV FVNPAAERMT GWQAQELLGK KIHQYHHHSH ADGSPYPADE CQIYCTMFDG KRREVKNEVF WRKDGTSFAV EYTSTPVYRQ GELIGAVAVF RDISAQQQTQ NELKQALEQV KHLSEQLQDE NNYLIAELNE DWQDSGLVGQ SHVFQAMLAQ IKLVSETDST VLILGENGTG KELVARNLHR LSKRSNQAFI KVNCSAFTPS LLESELFGHE RGAFTGANER RKGRFELADK GTLFLDEVAE LPLEAQSKLL RVLQEQEFER VGGSTTLKVN IRVLAATNRD LWQMVQKGTF RIDLYYRLNV FPIKVPALKE RKEDIPYLCT NLITQLNKRL AKQIKGVSKK AISQLQAYDW PGNIRELQNV LEREAILTKH TVLKLSQPLH GDASTAVNTS LTLAEAQKQH IIAVLELSQW QISGDKGAAC KLGLPESTLR SKMRKLGISK KT //