ID   N6V3M1_9GAMM            Unreviewed;       472 AA.
AC   N6V3M1;
DT   26-JUN-2013, integrated into UniProtKB/TrEMBL.
DT   26-JUN-2013, sequence version 1.
DT   07-JUN-2017, entry version 28.
DE   SubName: Full=Sigma-54 dependent transcriptional regulator/sensory box protein {ECO:0000313|EMBL:ENN99294.1};
GN   ORFNames=J139_07852 {ECO:0000313|EMBL:ENN99294.1};
OS   Pseudoalteromonas agarivorans S816.
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales;
OC   Pseudoalteromonadaceae; Pseudoalteromonas.
OX   NCBI_TaxID=1307437 {ECO:0000313|EMBL:ENN99294.1, ECO:0000313|Proteomes:UP000012320};
RN   [1] {ECO:0000313|EMBL:ENN99294.1, ECO:0000313|Proteomes:UP000012320}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S816 {ECO:0000313|EMBL:ENN99294.1,
RC   ECO:0000313|Proteomes:UP000012320};
RA   Vynne N.G., Gram L.;
RT   "Comparative genomics of marine Pseudoalteromonads.";
RL   Submitted (MAR-2013) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an
CC       EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
CC       preliminary data. {ECO:0000313|EMBL:ENN99294.1}.
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DR   EMBL; APME01000017; ENN99294.1; -; Genomic_DNA.
DR   RefSeq; WP_004587243.1; NZ_APME01000017.1.
DR   ProteinModelPortal; N6V3M1; -.
DR   EnsemblBacteria; ENN99294; ENN99294; J139_07852.
DR   PATRIC; fig|1307437.4.peg.1603; -.
DR   OrthoDB; POG091H03UM; -.
DR   Proteomes; UP000012320; Unassembled WGS sequence.
DR   GO; GO:0005622; C:intracellular; IEA:GOC.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR   GO; GO:0008134; F:transcription factor binding; IEA:InterPro.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR   CDD; cd00130; PAS; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR001610; PAC.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR000700; PAS-assoc_C.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF00989; PAS; 1.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00086; PAC; 1.
DR   SMART; SM00091; PAS; 1.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF55785; SSF55785; 1.
DR   TIGRFAMs; TIGR00229; sensory_box; 1.
DR   PROSITE; PS50113; PAC; 1.
DR   PROSITE; PS50112; PAS; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110192}; Coiled coil {ECO:0000256|SAM:Coils};
KW   Complete proteome {ECO:0000313|Proteomes:UP000012320};
KW   DNA-binding {ECO:0000256|SAAS:SAAS00009904};
KW   Nucleotide-binding {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00110083};
KW   Transcription {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814760};
KW   Transcription regulation {ECO:0000256|PROSITE-ProRule:PRU00193,
KW   ECO:0000256|SAAS:SAAS00814754}.
FT   DOMAIN       12     57       PAS (PER-ARNT-SIM). {ECO:0000259|PROSITE:
FT                                PS50112}.
FT   DOMAIN       83    135       PAC (PAS-associated C-terminal).
FT                                {ECO:0000259|PROSITE:PS50113}.
FT   DOMAIN      167    396       Sigma-54 factor interaction.
FT                                {ECO:0000259|PROSITE:PS50045}.
FT   NP_BIND     195    202       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
FT   NP_BIND     258    267       ATP. {ECO:0000256|PROSITE-ProRule:
FT                                PRU00193}.
FT   COILED      126    157       {ECO:0000256|SAM:Coils}.
SQ   SEQUENCE   472 AA;  53141 MW;  13DA53DD9D5A57FE CRC64;
     MIKQFLNDPK LLLNAVGEGI YGFDLSGNAV FVNPAAERMT GWQAQELLGK KIHQYHHHSH
     ADGSPYPADE CQIYCTMFDG KRREVKNEVF WRKDGTSFAV EYTSTPVYRQ GELIGAVAVF
     RDISAQQQTQ NELKQALEQV KHLSEQLQDE NNYLIAELNE DWQDSGLVGQ SHVFQAMLAQ
     IKLVSETDST VLILGENGTG KELVARNLHR LSKRSNQAFI KVNCSAFTPS LLESELFGHE
     RGAFTGANER RKGRFELADK GTLFLDEVAE LPLEAQSKLL RVLQEQEFER VGGSTTLKVN
     IRVLAATNRD LWQMVQKGTF RIDLYYRLNV FPIKVPALKE RKEDIPYLCT NLITQLNKRL
     AKQIKGVSKK AISQLQAYDW PGNIRELQNV LEREAILTKH TVLKLSQPLH GDASTAVNTS
     LTLAEAQKQH IIAVLELSQW QISGDKGAAC KLGLPESTLR SKMRKLGISK KT
//