ID M1VCS1_CYAM1 Unreviewed; 1607 AA. AC M1VCS1; DT 01-MAY-2013, integrated into UniProtKB/TrEMBL. DT 01-MAY-2013, sequence version 1. DT 02-OCT-2024, entry version 59. DE RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279}; DE EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279}; GN ORFNames=CYME_CMK037C {ECO:0000313|EMBL:BAM80432.1}; OS Cyanidioschyzon merolae (strain NIES-3377 / 10D) (Unicellular red alga). OC Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; OC Cyanidioschyzon. OX NCBI_TaxID=280699 {ECO:0000313|EMBL:BAM80432.1, ECO:0000313|Proteomes:UP000007014}; RN [1] {ECO:0000313|EMBL:BAM80432.1, ECO:0000313|Proteomes:UP000007014} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=10D {ECO:0000313|EMBL:BAM80432.1, RC ECO:0000313|Proteomes:UP000007014}; RX PubMed=15071595; DOI=10.1038/nature02398; RA Matsuzaki M., Misumi O., Shin-i T., Maruyama S., Takahara M., RA Miyagishima S., Mori T., Nishida K., Yagisawa F., Nishida K., Yoshida Y., RA Nishimura Y., Nakao S., Kobayashi T., Momoyama Y., Higashiyama T., RA Minoda A., Sano M., Nomoto H., Oishi K., Hayashi H., Ohta F., Nishizaka S., RA Haga S., Miura S., Morishita T., Kabeya Y., Terasawa K., Suzuki Y., RA Ishii Y., Asakawa S., Takano H., Ohta N., Kuroiwa H., Tanaka K., RA Shimizu N., Sugano S., Sato N., Nozaki H., Ogasawara N., Kohara Y., RA Kuroiwa T.; RT "Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon RT merolae 10D."; RL Nature 428:653-657(2004). RN [2] {ECO:0000313|EMBL:BAM80432.1, ECO:0000313|Proteomes:UP000007014} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=10D {ECO:0000313|EMBL:BAM80432.1, RC ECO:0000313|Proteomes:UP000007014}; RX PubMed=17623057; DOI=10.1186/1741-7007-5-28; RA Nozaki H., Takano H., Misumi O., Terasawa K., Matsuzaki M., Maruyama S., RA Nishida K., Yagisawa F., Yoshida Y., Fujiwara T., Takio S., Tamura K., RA Chung S.J., Nakamura S., Kuroiwa H., Tanaka K., Sato N., Kuroiwa T.; RT "A 100%-complete sequence reveals unusually simple genomic features in the RT hot-spring red alga Cyanidioschyzon merolae."; RL BMC Biol. 5:28-28(2007). CC -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of CC DNA into RNA using the four ribonucleoside triphosphates as substrates. CC {ECO:0000256|RuleBase:RU004279}. CC -!- CATALYTIC ACTIVITY: CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA- CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395; CC EC=2.7.7.6; Evidence={ECO:0000256|RuleBase:RU004279}; CC -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family. CC {ECO:0000256|RuleBase:RU004279}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AP006493; BAM80432.1; -; Genomic_DNA. DR RefSeq; XP_005536468.1; XM_005536411.1. DR STRING; 280699.M1VCS1; -. DR EnsemblPlants; CMK037CT; CMK037CT; CMK037C. DR GeneID; 16994407; -. DR Gramene; CMK037CT; CMK037CT; CMK037C. DR KEGG; cme:CYME_CMK037C; -. DR eggNOG; KOG0262; Eukaryota. DR HOGENOM; CLU_000487_2_4_1; -. DR OMA; NREDYQQ; -. DR OrthoDB; 169836at2759; -. DR Proteomes; UP000007014; Chromosome 11. DR GO; GO:0005736; C:RNA polymerase I complex; IEA:TreeGrafter. DR GO; GO:0003677; F:DNA binding; IEA:InterPro. DR GO; GO:0001054; F:RNA polymerase I activity; IEA:TreeGrafter. DR CDD; cd02735; RNAP_I_Rpa1_C; 1. DR CDD; cd01435; RNAP_I_RPA1_N; 1. DR Gene3D; 1.10.132.30; -; 1. DR Gene3D; 1.10.150.390; -; 1. DR Gene3D; 2.40.40.20; -; 1. DR Gene3D; 6.10.250.2940; -; 1. DR Gene3D; 6.20.50.80; -; 1. DR Gene3D; 3.30.1490.180; RNA polymerase ii; 1. DR Gene3D; 4.10.860.120; RNA polymerase II, clamp domain; 1. DR Gene3D; 1.10.274.100; RNA polymerase Rpb1, domain 3; 1. DR InterPro; IPR047107; DNA-dir_RNA_pol1_lsu_C. DR InterPro; IPR015699; DNA-dir_RNA_pol1_lsu_N. DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime. DR InterPro; IPR000722; RNA_pol_asu. DR InterPro; IPR006592; RNA_pol_N. DR InterPro; IPR007080; RNA_pol_Rpb1_1. DR InterPro; IPR007066; RNA_pol_Rpb1_3. DR InterPro; IPR042102; RNA_pol_Rpb1_3_sf. DR InterPro; IPR007083; RNA_pol_Rpb1_4. DR InterPro; IPR007081; RNA_pol_Rpb1_5. DR InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain. DR InterPro; IPR038120; Rpb1_funnel_sf. DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1. DR PANTHER; PTHR19376:SF11; DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1; 1. DR Pfam; PF04997; RNA_pol_Rpb1_1; 1. DR Pfam; PF00623; RNA_pol_Rpb1_2; 1. DR Pfam; PF04983; RNA_pol_Rpb1_3; 1. DR Pfam; PF05000; RNA_pol_Rpb1_4; 1. DR Pfam; PF04998; RNA_pol_Rpb1_5; 1. DR SMART; SM00663; RPOLA_N; 1. DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1. PE 3: Inferred from homology; KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478, KW ECO:0000256|RuleBase:RU004279}; Magnesium {ECO:0000256|ARBA:ARBA00022842}; KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695, KW ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242}; KW Reference proteome {ECO:0000313|Proteomes:UP000007014}; KW Transcription {ECO:0000256|ARBA:ARBA00023163, KW ECO:0000256|RuleBase:RU004279}; KW Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}. FT DOMAIN 330..644 FT /note="RNA polymerase N-terminal" FT /evidence="ECO:0000259|SMART:SM00663" FT REGION 162..198 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 1282..1388 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 162..176 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 177..198 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1312..1326 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1350..1370 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" SQ SEQUENCE 1607 AA; 176423 MW; 3A9E4D4820502CC7 CRC64; MDERVVSLKS GDVHYRIGGV GFGFYTAEEV LQLSVQQIQS AVAFDDLGRP VRGGLYDPRL GVYDKFGICA TCRLGFFSCP GHCGHIELAE PVVNPLLFSL LVRLLRGVCL GCANFRLPRI REKLWLECLR HLERGTWQNF ESLADLLQLD KQSTSPDLAG FLDQTSDVSS ESSDGSRSST KKPRLESARG GHSGVHTDRF DAATEKLTTV QRSSRRVQLM QRFIGDCTSS NAACTRCGCK AVHIRTDGCR IFARLPPTRK RSKAAATTLA TAQASPDTEA QCQTQLLEAL CLVAGKEQLL LPSMVVRILL AVEQNSPELC GYLFGHHLLD TFLLRVLLVP PSRFRLPSTR DDDVNSIPRE HAQNFHYTYV LKANESVADA RKARNPLALG KAVAELQQAV QELVDSEPTA SMRRAPGIRQ QLEHKEGIFR MHLMGKRVNY AARSVISPDP FLDVNEVGVP LQFAMKLSFP ELVASWNLTR LQQNVYRGPQ RYPGANIIER GDGTRIQIPA GDSKRSGVLA ETLFEAEELP DGCVVPTRVF RHLQNGDRVL FNRQPTLHRV GLMAHRVRVL GPTENTLRLH YANCGAYNAD FDGDEMNMHV PQDWIAAAEA EYLLRIDFHY LSPTAGAPVR GLIQDHVLAA VLLTQRDRFF SWEEYSELIY AATARLWERK RGTEGTAPGS ALGPFTVCAD VPPAILYPQQ YWTGKQVLST VLGIVAHLAD PENRHRKLRM QSRAKVSSAF WGQSASEESI VIIRDGELLQ GVVDKAQIGA APFGLVHCVH ALYGPEAACD LLSCLGRLLT IFLRRHGHST GVEDLLLLPS TERIRWEMLK DTQITVGSRV LRRVLGLPAD GTVDLEHALA EALRTERGRE LELLLDMEMK KELASIASNV SEHCIPAGLR KPFPNNGFAL MTASGAKGSQ VNAAQISCLL GSTVLDGRRV PRSVAGWTLP CFRPYESTAL AGGFIASRFL TGLSPPEYFF HCMAGREGLT DTAVKTARSG YLQRCLVKAL EGVTIAYDGT VRESDGSIIQ FCYGEDGLDP CQALWLQHRA EFMAILLADG TRSAGKFASQ SPSNATRKSN AVSAAEVCAT HSASSPKLPP ALLEMYETLD EAHRSALLEW YTRSTAAPGD AVGVIAAQSI GEPSTQMTLN TFHFAGIGVE HVTAGVPRLR ELLMFPGSAP ATPFMQIPFK EGVSRERAVA TCYALRSVRL RDLILRLQLR LQGAKRNERV HLTLIMVLAE PELWTQVLGI SPNNVQAATK KTYGPVLKAL IARRLRELDS QQTWSSSSVT LNEKDQDSGE PEAPVETEML DAGLSDTSSE SSADSVPADN ELVARRSTDQ DESSELSVDS ESEGLEKIAS RDHNDEIRSK TTVAPGDTPC LPQVPDAPED NDAVVVRFPS PNRVEMSLWL PSAAWYTLFL DELALAAAER VPVRAVENIR NTTLTTREDG GIALRTEGSN IRLAWTLSDD ELDLDGLFSN HISEVLSVYG IEAARARLVR ELQTVFAAYG IAVDYRHLSL IADYQTALGA CRPFSRTGMR MLDSVPSALQ RMSFESASQF LRDAALAREE DQLESASARL CLGQVVSQGT GMFSVLASER CGTVAVQ //