ID   M1VCS1_CYAM1            Unreviewed;      1607 AA.
AC   M1VCS1;
DT   01-MAY-2013, integrated into UniProtKB/TrEMBL.
DT   01-MAY-2013, sequence version 1.
DT   19-JAN-2022, entry version 49.
DE   RecName: Full=DNA-directed RNA polymerase subunit {ECO:0000256|RuleBase:RU004279};
DE            EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};
GN   ORFNames=CYME_CMK037C {ECO:0000313|EMBL:BAM80432.1};
OS   Cyanidioschyzon merolae (strain 10D) (Red alga).
OC   Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae;
OC   Cyanidioschyzon.
OX   NCBI_TaxID=280699 {ECO:0000313|EMBL:BAM80432.1, ECO:0000313|Proteomes:UP000007014};
RN   [1] {ECO:0000313|EMBL:BAM80432.1, ECO:0000313|Proteomes:UP000007014}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=10D {ECO:0000313|EMBL:BAM80432.1,
RC   ECO:0000313|Proteomes:UP000007014};
RX   PubMed=15071595; DOI=10.1038/nature02398;
RA   Matsuzaki M., Misumi O., Shin-i T., Maruyama S., Takahara M.,
RA   Miyagishima S., Mori T., Nishida K., Yagisawa F., Nishida K., Yoshida Y.,
RA   Nishimura Y., Nakao S., Kobayashi T., Momoyama Y., Higashiyama T.,
RA   Minoda A., Sano M., Nomoto H., Oishi K., Hayashi H., Ohta F., Nishizaka S.,
RA   Haga S., Miura S., Morishita T., Kabeya Y., Terasawa K., Suzuki Y.,
RA   Ishii Y., Asakawa S., Takano H., Ohta N., Kuroiwa H., Tanaka K.,
RA   Shimizu N., Sugano S., Sato N., Nozaki H., Ogasawara N., Kohara Y.,
RA   Kuroiwa T.;
RT   "Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon
RT   merolae 10D.";
RL   Nature 428:653-657(2004).
RN   [2] {ECO:0000313|EMBL:BAM80432.1, ECO:0000313|Proteomes:UP000007014}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=10D {ECO:0000313|EMBL:BAM80432.1,
RC   ECO:0000313|Proteomes:UP000007014};
RX   PubMed=17623057; DOI=10.1186/1741-7007-5-28;
RA   Nozaki H., Takano H., Misumi O., Terasawa K., Matsuzaki M., Maruyama S.,
RA   Nishida K., Yagisawa F., Yoshida Y., Fujiwara T., Takio S., Tamura K.,
RA   Chung S.J., Nakamura S., Kuroiwa H., Tanaka K., Sato N., Kuroiwa T.;
RT   "A 100%-complete sequence reveals unusually simple genomic features in the
RT   hot-spring red alga Cyanidioschyzon merolae.";
RL   BMC Biol. 5:28-28(2007).
CC   -!- FUNCTION: DNA-dependent RNA polymerase catalyzes the transcription of
CC       DNA into RNA using the four ribonucleoside triphosphates as substrates.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC         RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC         COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC         EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550,
CC         ECO:0000256|RuleBase:RU004279};
CC   -!- SIMILARITY: Belongs to the RNA polymerase beta' chain family.
CC       {ECO:0000256|RuleBase:RU004279}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; AP006493; BAM80432.1; -; Genomic_DNA.
DR   RefSeq; XP_005536468.1; XM_005536411.1.
DR   STRING; 45157.CMK037CT; -.
DR   EnsemblPlants; CMK037CT; CMK037CT; CMK037C.
DR   GeneID; 16994407; -.
DR   Gramene; CMK037CT; CMK037CT; CMK037C.
DR   KEGG; cme:CYME_CMK037C; -.
DR   eggNOG; KOG0262; Eukaryota.
DR   HOGENOM; CLU_000487_2_4_1; -.
DR   OMA; RFFNRED; -.
DR   OrthoDB; 591636at2759; -.
DR   Proteomes; UP000007014; Chromosome 11.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0006351; P:transcription, DNA-templated; IEA:InterPro.
DR   Gene3D; 1.10.132.30; -; 1.
DR   Gene3D; 1.10.274.100; -; 1.
DR   Gene3D; 4.10.860.120; -; 1.
DR   InterPro; IPR015699; DNA-dir_RNA_pol1_lsu.
DR   InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR   InterPro; IPR000722; RNA_pol_asu.
DR   InterPro; IPR006592; RNA_pol_N.
DR   InterPro; IPR007080; RNA_pol_Rpb1_1.
DR   InterPro; IPR007066; RNA_pol_Rpb1_3.
DR   InterPro; IPR042102; RNA_pol_Rpb1_3_sf.
DR   InterPro; IPR007083; RNA_pol_Rpb1_4.
DR   InterPro; IPR007081; RNA_pol_Rpb1_5.
DR   InterPro; IPR044893; RNA_pol_Rpb1_clamp_domain.
DR   InterPro; IPR038120; Rpb1_funnel_sf.
DR   PANTHER; PTHR19376; PTHR19376; 1.
DR   PANTHER; PTHR19376:SF11; PTHR19376:SF11; 1.
DR   Pfam; PF04997; RNA_pol_Rpb1_1; 1.
DR   Pfam; PF00623; RNA_pol_Rpb1_2; 1.
DR   Pfam; PF04983; RNA_pol_Rpb1_3; 1.
DR   Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR   Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR   SMART; SM00663; RPOLA_N; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW   ECO:0000256|RuleBase:RU004279}; Magnesium {ECO:0000256|ARBA:ARBA00022842};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695,
KW   ECO:0000256|RuleBase:RU004279}; Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007014};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163,
KW   ECO:0000256|RuleBase:RU004279};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679, ECO:0000256|RuleBase:RU004279}.
FT   DOMAIN          330..644
FT                   /note="RPOLA_N"
FT                   /evidence="ECO:0000259|SMART:SM00663"
FT   REGION          162..198
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1282..1388
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        162..176
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        177..198
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1312..1326
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1350..1370
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1607 AA;  176423 MW;  3A9E4D4820502CC7 CRC64;
     MDERVVSLKS GDVHYRIGGV GFGFYTAEEV LQLSVQQIQS AVAFDDLGRP VRGGLYDPRL
     GVYDKFGICA TCRLGFFSCP GHCGHIELAE PVVNPLLFSL LVRLLRGVCL GCANFRLPRI
     REKLWLECLR HLERGTWQNF ESLADLLQLD KQSTSPDLAG FLDQTSDVSS ESSDGSRSST
     KKPRLESARG GHSGVHTDRF DAATEKLTTV QRSSRRVQLM QRFIGDCTSS NAACTRCGCK
     AVHIRTDGCR IFARLPPTRK RSKAAATTLA TAQASPDTEA QCQTQLLEAL CLVAGKEQLL
     LPSMVVRILL AVEQNSPELC GYLFGHHLLD TFLLRVLLVP PSRFRLPSTR DDDVNSIPRE
     HAQNFHYTYV LKANESVADA RKARNPLALG KAVAELQQAV QELVDSEPTA SMRRAPGIRQ
     QLEHKEGIFR MHLMGKRVNY AARSVISPDP FLDVNEVGVP LQFAMKLSFP ELVASWNLTR
     LQQNVYRGPQ RYPGANIIER GDGTRIQIPA GDSKRSGVLA ETLFEAEELP DGCVVPTRVF
     RHLQNGDRVL FNRQPTLHRV GLMAHRVRVL GPTENTLRLH YANCGAYNAD FDGDEMNMHV
     PQDWIAAAEA EYLLRIDFHY LSPTAGAPVR GLIQDHVLAA VLLTQRDRFF SWEEYSELIY
     AATARLWERK RGTEGTAPGS ALGPFTVCAD VPPAILYPQQ YWTGKQVLST VLGIVAHLAD
     PENRHRKLRM QSRAKVSSAF WGQSASEESI VIIRDGELLQ GVVDKAQIGA APFGLVHCVH
     ALYGPEAACD LLSCLGRLLT IFLRRHGHST GVEDLLLLPS TERIRWEMLK DTQITVGSRV
     LRRVLGLPAD GTVDLEHALA EALRTERGRE LELLLDMEMK KELASIASNV SEHCIPAGLR
     KPFPNNGFAL MTASGAKGSQ VNAAQISCLL GSTVLDGRRV PRSVAGWTLP CFRPYESTAL
     AGGFIASRFL TGLSPPEYFF HCMAGREGLT DTAVKTARSG YLQRCLVKAL EGVTIAYDGT
     VRESDGSIIQ FCYGEDGLDP CQALWLQHRA EFMAILLADG TRSAGKFASQ SPSNATRKSN
     AVSAAEVCAT HSASSPKLPP ALLEMYETLD EAHRSALLEW YTRSTAAPGD AVGVIAAQSI
     GEPSTQMTLN TFHFAGIGVE HVTAGVPRLR ELLMFPGSAP ATPFMQIPFK EGVSRERAVA
     TCYALRSVRL RDLILRLQLR LQGAKRNERV HLTLIMVLAE PELWTQVLGI SPNNVQAATK
     KTYGPVLKAL IARRLRELDS QQTWSSSSVT LNEKDQDSGE PEAPVETEML DAGLSDTSSE
     SSADSVPADN ELVARRSTDQ DESSELSVDS ESEGLEKIAS RDHNDEIRSK TTVAPGDTPC
     LPQVPDAPED NDAVVVRFPS PNRVEMSLWL PSAAWYTLFL DELALAAAER VPVRAVENIR
     NTTLTTREDG GIALRTEGSN IRLAWTLSDD ELDLDGLFSN HISEVLSVYG IEAARARLVR
     ELQTVFAAYG IAVDYRHLSL IADYQTALGA CRPFSRTGMR MLDSVPSALQ RMSFESASQF
     LRDAALAREE DQLESASARL CLGQVVSQGT GMFSVLASER CGTVAVQ
//