ID VP4_ROTB2 Reviewed; 826 AA. AC A9Q1L0; DT 14-APR-2009, integrated into UniProtKB/Swiss-Prot. DT 05-FEB-2008, sequence version 1. DT 24-JAN-2024, entry version 60. DE RecName: Full=Outer capsid protein VP4 {ECO:0000255|HAMAP-Rule:MF_04125}; DE AltName: Full=Hemagglutinin {ECO:0000255|HAMAP-Rule:MF_04125}; DE Contains: DE RecName: Full=Outer capsid protein VP8* {ECO:0000305}; DE Contains: DE RecName: Full=Outer capsid protein VP5* {ECO:0000305}; OS Rotavirus X (isolate RVX/Human/Bangladesh/NADRV-B219/2002/GXP[X]) (RV OS ADRV-N) (Rotavirus (isolate novel adult diarrhea rotavirus-B219)). OC Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; OC Reovirales; Sedoreoviridae; Rotavirus. OX NCBI_TaxID=348136; OH NCBI_TaxID=9606; Homo sapiens (Human). RN [1] RP NUCLEOTIDE SEQUENCE [MRNA], AND PUTATIVE CLEAVAGE SITES. RX PubMed=18814255; DOI=10.1002/jmv.21286; RA Nagashima S., Kobayashi N., Ishino M., Alam M.M., Ahmed M.U., Paul S.K., RA Ganesh B., Chawla-Sarkar M., Krishnan T., Naik T.N., Wang Y.-H.; RT "Whole genomic characterization of a human rotavirus strain B219 belonging RT to a novel group of the genus Rotavirus."; RL J. Med. Virol. 80:2023-2033(2008). CC -!- FUNCTION: [Outer capsid protein VP4]: Spike-forming protein that CC mediates virion attachment to the host epithelial cell receptors and CC plays a major role in cell penetration, determination of host range CC restriction and virulence. Rotavirus attachment and entry into the host CC cell probably involves multiple sequential contacts between the outer CC capsid proteins VP4 and VP7, and the cell receptors. It is subsequently CC lost, together with VP7, following virus entry into the host cell. CC Following entry into the host cell, low intracellular or intravesicular CC Ca(2+) concentration probably causes the calcium-stabilized VP7 trimers CC to dissociate from the virion. This step is probably necessary for the CC membrane-disrupting entry step and the release of VP4, which is locked CC onto the virion by VP7. {ECO:0000255|HAMAP-Rule:MF_04125}. CC -!- FUNCTION: [Outer capsid protein VP5*]: Forms the spike 'foot' and CC 'body' and acts as a membrane permeabilization protein that mediates CC release of viral particles from endosomal compartments into the CC cytoplasm. During entry, the part of VP5* that protrudes from the virus CC folds back on itself and reorganizes from a local dimer to a trimer. CC This reorganization may be linked to membrane penetration. CC {ECO:0000305}. CC -!- FUNCTION: [Outer capsid protein VP8*]: Forms the head of the spikes and CC mediates the recognition of specific host cell surface glycans. It is CC the viral hemagglutinin and an important target of neutralizing CC antibodies. {ECO:0000305}. CC -!- SUBUNIT: [Outer capsid protein VP4]: Homotrimer. VP4 adopts a dimeric CC appearance above the capsid surface, while forming a trimeric base CC anchored inside the capsid layer. Only hints of the third molecule are CC observed above the capsid surface. It probably performs a series of CC molecular rearrangements during viral entry. Prior to trypsin cleavage, CC it is flexible. The priming trypsin cleavage triggers its rearrangement CC into rigid spikes with approximate two-fold symmetry of their CC protruding parts. After an unknown second triggering event, cleaved VP4 CC may undergo another rearrangement, in which two VP5* subunits fold back CC on themselves and join a third subunit to form a tightly associated CC trimer, shaped like a folded umbrella. Interacts with VP6. Interacts CC with VP7. {ECO:0000305}. CC -!- SUBUNIT: [Outer capsid protein VP5*]: Homotrimer. The trimer is coiled- CC coil stabilized by its C-terminus, however, its N-terminus, known as CC antigen domain or 'body', seems to be flexible allowing it to self- CC associate either as a dimer or a trimer. {ECO:0000305}. CC -!- SUBCELLULAR LOCATION: [Outer capsid protein VP4]: Virion CC {ECO:0000255|HAMAP-Rule:MF_04125}. Host rough endoplasmic reticulum CC {ECO:0000255|HAMAP-Rule:MF_04125}. Host cell membrane CC {ECO:0000255|HAMAP-Rule:MF_04125}. Host endoplasmic reticulum-Golgi CC intermediate compartment {ECO:0000255|HAMAP-Rule:MF_04125}. Note=The CC outer layer contains 180 copies of VP4, grouped as 60 dimers. Immature CC double-layered particles assembled in the cytoplasm bud across the CC membrane of the endoplasmic reticulum, acquiring during this process a CC transient lipid membrane that is modified with the ER resident viral CC glycoproteins NSP4 and VP7; these enveloped particles also contain VP4. CC As the particles move towards the interior of the ER cisternae, the CC transient lipid membrane and the non-structural protein NSP4 are lost, CC while the virus surface proteins VP4 and VP7 rearrange to form the CC outermost virus protein layer, yielding mature infectious triple- CC layered particles. {ECO:0000255|HAMAP-Rule:MF_04125}. CC -!- DOMAIN: [Outer capsid protein VP4]: The VP4 spike is divided into a CC foot, a stalk and body, and a head. {ECO:0000255|HAMAP-Rule:MF_04125}. CC -!- PTM: [Outer capsid protein VP4]: Proteolytic cleavage by trypsin CC results in activation of VP4 functions and greatly increases CC infectivity. The penetration into the host cell is dependent on trypsin CC treatment of VP4. It produces two peptides, VP5* and VP8* that remain CC associated with the virion. Cleavage of VP4 by trypsin probably occurs CC in vivo in the lumen of the intestine prior to infection of CC enterocytes. Trypsin seems to be incorporated into the three-layered CC viral particles but remains inactive as long as the viral outer capsid CC is intact and would only be activated upon the solubilization of the CC latter. {ECO:0000255|HAMAP-Rule:MF_04125}. CC -!- SIMILARITY: Belongs to the rotavirus VP4 family. {ECO:0000255|HAMAP- CC Rule:MF_04125}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; EF453358; ABR32125.1; -; mRNA. DR IntAct; A9Q1L0; 1. DR Proteomes; UP000174021; Genome. DR GO; GO:0044172; C:host cell endoplasmic reticulum-Golgi intermediate compartment; IEA:UniProtKB-SubCell. DR GO; GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0044168; C:host cell rough endoplasmic reticulum; IEA:UniProtKB-SubCell. DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW. DR GO; GO:0039624; C:viral outer capsid; IEA:UniProtKB-UniRule. DR GO; GO:0039665; P:permeabilization of host organelle membrane involved in viral entry into host cell; IEA:UniProtKB-UniRule. DR GO; GO:0099008; P:viral entry via permeabilization of inner membrane; IEA:UniProtKB-KW. DR GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-UniRule. DR HAMAP; MF_04125; Rota_VP4; 1. DR InterPro; IPR042546; Rota_A_VP4. DR InterPro; IPR035330; Rota_VP4_MID. DR InterPro; IPR038017; Rota_VP4_MID_sf. DR Pfam; PF17477; Rota_VP4_MID; 1. DR SUPFAM; SSF111379; VP4 membrane interaction domain; 1. PE 1: Evidence at protein level; KW Capsid protein; Hemagglutinin; Host cell membrane; KW Host endoplasmic reticulum; Host membrane; Host-virus interaction; KW Membrane; Outer capsid protein; Reference proteome; KW Viral attachment to host cell; Viral penetration into host cytoplasm; KW Viral penetration via permeabilization of host membrane; Virion; KW Virus entry into host cell. FT CHAIN 1..826 FT /note="Outer capsid protein VP4" FT /evidence="ECO:0000255|HAMAP-Rule:MF_04125" FT /id="PRO_0000369842" FT CHAIN 1..249 FT /note="Outer capsid protein VP8*" FT /id="PRO_0000369843" FT CHAIN 263..826 FT /note="Outer capsid protein VP5*" FT /id="PRO_0000369844" FT SITE 249..250 FT /note="Probable cleavage" FT /evidence="ECO:0000305" FT SITE 262..263 FT /note="Probable cleavage" FT /evidence="ECO:0000305" SQ SEQUENCE 826 AA; 93311 MW; B8CC3EDD7D540505 CRC64; MSLRSLLITT EAVGETTQTS DHQTSFSTRT YNEINDRPSL RVEKDGEKAY CFKNLDPVRY DTRMGEYPFD YGGQSTENNQ LQFDLFTKDL MADTDIGLSD DVRDDLKRQI KEYYQQGYRA IFLIRPQNQE QQYIASYSST NLNFTSQLSV GVNLSVLNKI QENKLHIYST QPHIPSVGCE MITKIFRTDV DNENSLINYS VPVTVTISVT KATFEDTFVW NQNNDYPNMN YKDLIPAVTK NSIYHDVKRI TKIHEYINSK KKKNGVGKIG GIQIAESKDG FWKILTKNYQ IKLKFGIEGY GVMGGTFGNW LIDSGFKTVE TNYEYQRNGK TINATTVASV KPSRKCGTRS PVFGQLQFSG EMMVLSHNDI LTVFYTEREW ALSNAIYAKN FATDFKRQFE VTAQSDELLV RTNVVPHTIK NTPGKALMEY SHGGFGQIDT SDYTGMALTF RFRCVSEDLP EGYYDKDKAL TFANVGLTSF QDRQETNGTY WVYNTSTVGF GSCYPKKEFE YDINVTYTTL LPSDPEFTTG GTNYAQSVTA VLEESFINLQ NQVNEMLTRM NISDLTSGVM SVFSVATSFP QILDGISDLL KAASSAFKKV KGKVGNVAKR LRGKRYVRLF DEDISIEETP RFLDSIRSSR RPSILSNMFN DDETFTALHT LASRTNSVAS DVTYIQPIIT TRIANSTPPV IAPASSVTYA KLKDISKIIN AEIDPKSIME FNQVSNTISI LDSTKKLAQY AVDPDVIDGI LNKMVGGHAR SLFSLKVRKH LLDAVEKDAF VKYNYHDLMG KLLNDRELLD ITNNLSSQKQ FELAKEFRDL LINALA //