ID A3AUD5_ORYSJ Unreviewed; 697 AA. AC A3AUD5; DT 20-MAR-2007, integrated into UniProtKB/TrEMBL. DT 20-MAR-2007, sequence version 1. DT 29-MAY-2024, entry version 75. DE RecName: Full=Photolyase/cryptochrome alpha/beta domain-containing protein {ECO:0000259|PROSITE:PS51645}; GN ORFNames=OsJ_15004 {ECO:0000313|EMBL:EAZ30924.1}; OS Oryza sativa subsp. japonica (Rice). OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. OX NCBI_TaxID=39947 {ECO:0000313|EMBL:EAZ30924.1}; RN [1] {ECO:0000313|EMBL:EAZ30924.1} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038; RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L., RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J., RA Samudrala R., Wang J., Wong G.K., Yang H.; RT "The genomes of Oryza sativa: a history of duplications."; RL PLoS Biol. 3:266-281(2005). RN [2] {ECO:0000313|EMBL:EAZ30924.1} RP NUCLEOTIDE SEQUENCE. RA Wang J., Li R., Fan W., Huang Q., Zhang J., Zhou Y., Hu Y., Zi S., Li J., RA Ni P., Zheng H., Zhang Y., Zhao M., Hao Q., McDermott J., Samudrala R., RA Kristiansen K., Wong G.K.-S.; RT "Improved gene annotation of the rice (Oryza sativa) genomes."; RL Submitted (DEC-2008) to the EMBL/GenBank/DDBJ databases. CC -!- COFACTOR: CC Name=FAD; Xref=ChEBI:CHEBI:57692; CC Evidence={ECO:0000256|PIRSR:PIRSR602081-1}; CC Note=Binds 1 FAD per subunit. {ECO:0000256|PIRSR:PIRSR602081-1}; CC -!- SIMILARITY: Belongs to the DNA photolyase class-1 family. CC {ECO:0000256|ARBA:ARBA00005862}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; CM000141; EAZ30924.1; -; Genomic_DNA. DR AlphaFoldDB; A3AUD5; -. DR Proteomes; UP000007752; Chromosome 4. DR GO; GO:0005737; C:cytoplasm; IEA:TreeGrafter. DR GO; GO:0005634; C:nucleus; IEA:TreeGrafter. DR GO; GO:0009882; F:blue light photoreceptor activity; IEA:InterPro. DR GO; GO:0003904; F:deoxyribodipyrimidine photo-lyase activity; IEA:TreeGrafter. DR GO; GO:0003677; F:DNA binding; IEA:TreeGrafter. DR GO; GO:0071949; F:FAD binding; IEA:TreeGrafter. DR GO; GO:0032922; P:circadian regulation of gene expression; IEA:TreeGrafter. DR GO; GO:0043153; P:entrainment of circadian clock by photoperiod; IEA:TreeGrafter. DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:UniProt. DR GO; GO:0006950; P:response to stress; IEA:UniProt. DR Gene3D; 1.25.40.80; -; 1. DR Gene3D; 1.10.579.10; DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3; 1. DR Gene3D; 3.40.50.620; HUPs; 1. DR InterPro; IPR036134; Crypto/Photolyase_FAD-like_sf. DR InterPro; IPR036155; Crypto/Photolyase_N_sf. DR InterPro; IPR005101; Cryptochr/Photolyase_FAD-bd. DR InterPro; IPR002081; Cryptochrome/DNA_photolyase_1. DR InterPro; IPR020978; Cryptochrome_C. DR InterPro; IPR014134; Cryptochrome_pln. DR InterPro; IPR018394; DNA_photolyase_1_CS_C. DR InterPro; IPR006050; DNA_photolyase_N. DR InterPro; IPR014729; Rossmann-like_a/b/a_fold. DR NCBIfam; TIGR02766; crypt_chrom_pln; 1. DR PANTHER; PTHR11455; CRYPTOCHROME; 1. DR PANTHER; PTHR11455:SF50; CRYPTOCHROME-1; 1. DR Pfam; PF12546; Cryptochrome_C; 1. DR Pfam; PF00875; DNA_photolyase; 1. DR Pfam; PF03441; FAD_binding_7; 1. DR PRINTS; PR00147; DNAPHOTLYASE. DR SUPFAM; SSF48173; Cryptochrome/photolyase FAD-binding domain; 1. DR SUPFAM; SSF52425; Cryptochrome/photolyase, N-terminal domain; 1. DR PROSITE; PS00394; DNA_PHOTOLYASES_1_1; 1. DR PROSITE; PS00691; DNA_PHOTOLYASES_1_2; 1. DR PROSITE; PS51645; PHR_CRY_ALPHA_BETA; 1. PE 3: Inferred from homology; KW Chromophore {ECO:0000256|ARBA:ARBA00022991}; KW FAD {ECO:0000256|ARBA:ARBA00022827, ECO:0000256|PIRSR:PIRSR602081-1}; KW Flavoprotein {ECO:0000256|ARBA:ARBA00022630, ECO:0000256|PIRSR:PIRSR602081- KW 1}. FT DOMAIN 15..146 FT /note="Photolyase/cryptochrome alpha/beta" FT /evidence="ECO:0000259|PROSITE:PS51645" FT REGION 654..676 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT BINDING 240 FT /ligand="FAD" FT /ligand_id="ChEBI:CHEBI:57692" FT /evidence="ECO:0000256|PIRSR:PIRSR602081-1" FT BINDING 252..256 FT /ligand="FAD" FT /ligand_id="ChEBI:CHEBI:57692" FT /evidence="ECO:0000256|PIRSR:PIRSR602081-1" FT BINDING 295 FT /ligand="FAD" FT /ligand_id="ChEBI:CHEBI:57692" FT /evidence="ECO:0000256|PIRSR:PIRSR602081-1" FT BINDING 395..397 FT /ligand="FAD" FT /ligand_id="ChEBI:CHEBI:57692" FT /evidence="ECO:0000256|PIRSR:PIRSR602081-1" FT SITE 329 FT /note="Electron transfer via tryptophanyl radical" FT /evidence="ECO:0000256|PIRSR:PIRSR602081-2" FT SITE 382 FT /note="Electron transfer via tryptophanyl radical" FT /evidence="ECO:0000256|PIRSR:PIRSR602081-2" FT SITE 405 FT /note="Electron transfer via tryptophanyl radical" FT /evidence="ECO:0000256|PIRSR:PIRSR602081-2" SQ SEQUENCE 697 AA; 79073 MW; 9B972F17DA1DC07A CRC64; MQFLGNRAIY AVLRKTLEQI IGRDLRVEDN PALAAAARAG GEVVPAYVWA PEEDGPYYPG RVSRWWLSQS LKHLDASLRR LGAGKLVTRR SADAVVALLQ LVRDTGATRL FFNHLYDPIS LVRDHRLKEM MAAEGIIVQS FNADLLYEPW EVVDDEGQSF TMFAPFWNRC LSMPYDPAAP LLPPKRINSG DLSMCPSDDL IFEDDSERGS NALLARAWSP GWQNADKALT AFLNGPLIHY SVNRKKADSA STSLLSPYLH FGELSVRKVF HLVRMKQLVW SNEGNRAAEE SCTLFLRSIG LREYSRYLSF NHPCSHEKPL LAHLRFFPWV INECYFKIWR QGRTGYPLVD AGMRELWATG WLHDRIRVVV SSFFVKVLQL PWRWGMKYFW DTLLDADLES DALGWQYISG SLPDGRELDR IDNPQLEGYK FDPHGEYVRR WLPELARLPT EWIHHPWDAP ASVLQAAGVE LGSNYPLPIV GLDAANARLQ EALSEMWQLE AASRAAMDNG MEEGLGDSSE VPPIEFPREL QMEVDREPAR VTANVLTTAR RREDQMVPTM TSSLNRAETE ISADFMNSVD SRAEVPTRVN FEPRTEREEN FRTTAGNVAR TNGIHEHNNF QQPQHRMRNV LAPSVSEASS GWTGREGGVV PVWSPPAASD HSETFASDEA DISSRSYLDR HPQSHRLMNW SQLSQSL //