ID   A0A899J7C5_9VIRU        Unreviewed;      2788 AA.
AC   A0A899J7C5;
DT   29-SEP-2021, integrated into UniProtKB/TrEMBL.
DT   29-SEP-2021, sequence version 1.
DT   24-JAN-2024, entry version 12.
DE   RecName: Full=Genome polyprotein {ECO:0000256|ARBA:ARBA00020107};
DE   Flags: Fragment;
OS   Lettuce mottle virus.
OC   Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes;
OC   Picornavirales.
OX   NCBI_TaxID=332934 {ECO:0000313|EMBL:QSM07375.1};
RN   [1] {ECO:0000313|EMBL:QSM07375.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=SP {ECO:0000313|EMBL:QSM07375.1};
RA   Svanella-Dumas L., Tsarmpopoulos I., Marais A., Faure C., Theil S.,
RA   Gaudin J., Leite de Oliveira M., Krause-Sakate R., Candresse T.;
RT   "Molecular and biological characterization of novel and known Sequiviridae
RT   members infecting lettuce.";
RL   Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
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DR   EMBL; MT348709; QSM07375.1; -; Genomic_RNA.
DR   GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-KW.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro.
DR   GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:InterPro.
DR   GO; GO:0003968; F:RNA-dependent RNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0005198; F:structural molecule activity; IEA:InterPro.
DR   GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR   GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR   GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro.
DR   CDD; cd23169; ps-ssRNAv-Picornavirales; 1.
DR   CDD; cd00205; rhv_like; 1.
DR   Gene3D; 1.20.960.20; -; 1.
DR   Gene3D; 2.60.120.20; -; 2.
DR   Gene3D; 3.30.70.270; -; 1.
DR   Gene3D; 2.40.10.10; Trypsin-like serine proteases; 1.
DR   InterPro; IPR043502; DNA/RNA_pol_sf.
DR   InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir.
DR   InterPro; IPR014759; Helicase_SF3_ssRNA_vir.
DR   InterPro; IPR044067; PCV_3C_PRO.
DR   InterPro; IPR009003; Peptidase_S1_PA.
DR   InterPro; IPR043504; Peptidase_S1_PA_chymotrypsin.
DR   InterPro; IPR001676; Picornavirus_capsid.
DR   InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR   InterPro; IPR033703; Rhv-like.
DR   InterPro; IPR001205; RNA-dir_pol_C.
DR   InterPro; IPR007094; RNA-dir_pol_PSvirus.
DR   InterPro; IPR029053; Viral_coat.
DR   Pfam; PF00680; RdRP_1; 1.
DR   Pfam; PF00073; Rhv; 1.
DR   Pfam; PF00910; RNA_helicase; 1.
DR   SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR   SUPFAM; SSF88633; Positive stranded ssRNA viruses; 2.
DR   SUPFAM; SSF50494; Trypsin-like serine proteases; 1.
DR   PROSITE; PS51874; PCV_3C_PRO; 1.
DR   PROSITE; PS50507; RDRP_SSRNA_POS; 1.
DR   PROSITE; PS51218; SF3_HELICASE_2; 1.
PE   4: Predicted;
KW   ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW   Capsid protein {ECO:0000256|ARBA:ARBA00022561};
KW   Helicase {ECO:0000256|ARBA:ARBA00022806};
KW   Host membrane {ECO:0000256|ARBA:ARBA00022870};
KW   Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW   Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW   Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Protease {ECO:0000256|ARBA:ARBA00022670};
KW   RNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022484};
KW   Thiol protease {ECO:0000256|ARBA:ARBA00022807};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius};
KW   Viral RNA replication {ECO:0000256|ARBA:ARBA00022953};
KW   Virion {ECO:0000256|ARBA:ARBA00022561}.
FT   TRANSMEM        1134..1156
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        1168..1186
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          1400..1569
FT                   /note="SF3 helicase"
FT                   /evidence="ECO:0000259|PROSITE:PS51218"
FT   DOMAIN          1963..2169
FT                   /note="Peptidase C3"
FT                   /evidence="ECO:0000259|PROSITE:PS51874"
FT   DOMAIN          2487..2616
FT                   /note="RdRp catalytic"
FT                   /evidence="ECO:0000259|PROSITE:PS50507"
FT   REGION          1046..1068
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1046..1067
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:QSM07375.1"
FT   NON_TER         2788
FT                   /evidence="ECO:0000313|EMBL:QSM07375.1"
SQ   SEQUENCE   2788 AA;  310803 MW;  DE3B8E4D0006E569 CRC64;
     DVSNPTQIAI NAARGEYQAI EEFAFSAYNF VDVAEMEETS GNATKTLTNT IKRRAAAMLG
     VSRAFKETEQ VLSVERCRVK EISEHEEIIA TTFEPLRDMK TPSRTTQGKD DPTLGKHRAK
     YNYMAIDSMR VSISSLLHQG DERECIMYVC DRRISDPFLG ALALIGFPLK GMSTHVYKTG
     RIVCFSKHEA IAPEHIQLYV YIKGAKLLRK DNAPFALNMK TSFIFGNNAE NLLKHDTTMD
     TDGNLISFLT QNQDIFGWLE TAQGGGYTPL RRQEGCSSHS NRSSLMKAWA TPKGNISQRF
     SGSMIPRSVQ PNEEGADVHG ATLHVGNSRD DLGRLNIGVS RAGVSSTDMD ERLHSVVDFV
     QDSEIQPITA NLEAFMSEPN VAASVETFER QFTRPIYVNT IEWKSTHDVG AEVFALENPG
     DFMGTPSLFG QFVKRAFCFK ADFEVNIMIS GNEAFSGAIK VCVDHMRRLY EAGRDDVQVF
     QSMPGETLHA SDTNGLKFSL PFESIHNMIS AHDLGSHNAL SRVSLRVIAK LAHAQQTAPT
     MHMTIQVYVK NLSAKHAMWK SLETTFPVSQ GTPLPSVVGN RYGSLNTSSN SMGPAEIRSI
     VTQKALIGTA TISSETKLRI IVATFAIHPM SSRTESGILK LSQLAALSAM FSYWRGSLIV
     HFEMTCSSAT RGKVLFSITP KGGAEMKRRA GLHLGMGAEF DIGTAISRKF EIPFVSTDDW
     ESLGDRGLMS AFEGIWDCPV AKIIVLHPIN SIGATTPSVD IRCYISPGRD FELRGRRHLG
     LRTSLRPLSL GTAQNRHLQE GSSFTLMGAM EVNSIESSCI IQIPCAPWYS KDSIDYALLQ
     NPLHWASRFF TFWKGDLSFR IVIKEGDELG PNWQAPITMW HNSQATFDKC KISKVEGKTL
     SKEGYPSEKL SLKQMNTMEI TAHDDQRYRW RLCKLHDTQD SALEGSSTKY TGHPPLSSHT
     GVVFVKFPKG GFKAKVKIYS KPEANFQYHL SGGVPSLKLD KLRPYSSPFY PNGKPSVLGH
     NSQLLVGRAQ ASLSLPSFIT QRYTHSAPPT LDNPSSTSSS TAEPEAETLV ETSKRKLGEL
     FSIVGAKIKE ALSSLFLSVS KSVVCSLISS MIDKALSIFS DVFSKIAATF KDMLATPITS
     LILGLSFTAI ACYSALKFAS ATVPDSMGHF KTLITAVSVA LSVIYWPTAL STILMNLEKL
     FETIEESCHA VHEYFFPNSV TNQPSSSDYP ATSCTTSGVN PDELRDGKAQ GASDCVIGLV
     GLAAYIRLCV TICNSLGENY MDPFLPKNME KSLRSVSGIS QGIKTLVDFK DYLYRVIMGN
     LMPTSSYTAV SKEVGFDLKE WFEDVERLTL HENRYHDLNN EHKIWEIRQA YSKGVIVMGV
     LSRVEMVHLA RMCERTFKLA KELLDETHRV KGVSGVRLDP FHLSLFGSPG VGKSFVMGRL
     LEDTLDLMGE PMADRSYSKT PNEEYWSGYY GQTAVKCDDL GQDLSKGFSP TYNQIIQMKT
     NNPFIVPMAD LANKGRTFTS KYIFSTTNVR DCGSKHGLAD PDAFLRRRDL LVHVTTEGPL
     IHGQVNHMRF TILDPLNPNE RDTRFPENMI YADFLCLCIF EMTQYFRKQE KVLETLRGKS
     LGSMHTTREI RSVLELLDPE LERKVREVME ESYVDATDEP LVDERMEVTR EDIERGLEPG
     RAQANSFSSY QNDFDGNPLP KPFCKLFAKY RAGFAKDKKK VLTDLEIDEF GAFLSMGDFV
     SLNPGRLDSN LVGLAKPIHR EFFDYIFHER LLFVAKEDFL YPFTMTTAAM INRLVHATRY
     EIVDGNEVMK LEDEYDRMAY QSLSIPEKTA YHLMLACIRA KTLKSAGWRT SLSTWFEWVK
     QTCANIIDSL APTVKFLIML ATSCGAMFLA FKGVQGVVGA IKFAFGNPPS DEDYIQMSLD
     SLTALGRKGK GKQRPSFGSG DELTARIERM ISRSALATGV SQGGRTRYET QNLLLQRMGH
     LRNEETGVSL VAINIGNGCI LTPLHVFQMA EEDDMLVFSW QGEKFFFVFT KDKVTQVGEL
     DLCVINTHSV PKRDMVLSIF MDEKELEAFS DIKCSYVCGP YLGEAGAHVE DDLVAIRAKQ
     FKYTVGSQMF ISVQGWAVAH TTLEGQCGSV LVSHDEAVNG KVFGMLVAGT TDHKGNKVGT
     YVPVTKQMII RALGKTCELK QGAATSSVCG VHIDPDLNVA LGLGEKLTSE AVDGRLGIFA
     EGTQFGAIHV VGRTKPAASV RTATKTSIVP SLIQHTLPRA PLTEPAILSA EDPRLEGKLF
     DPLIDGIKKY EHQAKPFREE WRRKILDTFS EEMEEWETQM VRVNFQNKEP TLDEIINGID
     GAEYYESINM STSEGYPLIL KRPSDADGKK WLFDFDESTG KYRMANADLI RNYEAYGAAL
     SKLHPIPLIC IESPKDERRA LKKIYTEPKT RLFSILPVEF NMHARRLYLD FNVVTMANRH
     KHGIMVGINP HSREWTELAL GLASFSPIGF NGDFANFDGM FHPDAFDMVC DLANKFYGDS
     RGAERKCLTE ALTNRLSLVK GSVLSIGGGG PSGFPMTVIF NSFINLFYLQ AAWIQLAKEH
     GRNDIAHPCF YKKFVRAYVY GDDNIVSIKE EVISWYNLCT VSSFLKDAFG VTMTDGEKNQ
     AHLAKPYGNI LEFDFLKRGF LADTQIPSLF HAPLNRTSIE EQVYWIRKGG DAAELLQANA
     ENALYEASHH GREYFDELRS VVREAYRRIC KDVVLPTYIM CRQRWLTTDL GEVSTNSIPS
     KVNILVSAQR NTFRGAAAQR YGGTSVRT
//