ID A0A899J7C5_9VIRU Unreviewed; 2788 AA. AC A0A899J7C5; DT 29-SEP-2021, integrated into UniProtKB/TrEMBL. DT 29-SEP-2021, sequence version 1. DT 13-SEP-2023, entry version 10. DE RecName: Full=Genome polyprotein {ECO:0000256|ARBA:ARBA00020107}; DE Flags: Fragment; OS Lettuce mottle virus. OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales. OX NCBI_TaxID=332934 {ECO:0000313|EMBL:QSM07375.1}; RN [1] {ECO:0000313|EMBL:QSM07375.1} RP NUCLEOTIDE SEQUENCE. RC STRAIN=SP {ECO:0000313|EMBL:QSM07375.1}; RA Svanella-Dumas L., Tsarmpopoulos I., Marais A., Faure C., Theil S., RA Gaudin J., Leite de Oliveira M., Krause-Sakate R., Candresse T.; RT "Molecular and biological characterization of novel and known Sequiviridae RT members infecting lettuce."; RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; MT348709; QSM07375.1; -; Genomic_RNA. DR GO; GO:0033644; C:host cell membrane; IEA:UniProtKB-KW. DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW. DR GO; GO:0019028; C:viral capsid; IEA:UniProtKB-KW. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0004197; F:cysteine-type endopeptidase activity; IEA:InterPro. DR GO; GO:0003723; F:RNA binding; IEA:InterPro. DR GO; GO:0003724; F:RNA helicase activity; IEA:InterPro. DR GO; GO:0003968; F:RNA-dependent RNA polymerase activity; IEA:UniProtKB-KW. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro. DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW. DR GO; GO:0039694; P:viral RNA genome replication; IEA:InterPro. DR CDD; cd23169; ps-ssRNAv-Picornavirales; 1. DR CDD; cd00205; rhv_like; 1. DR Gene3D; 1.20.960.20; -; 1. DR Gene3D; 2.60.120.20; -; 2. DR Gene3D; 3.30.70.270; -; 1. DR Gene3D; 2.40.10.10; Trypsin-like serine proteases; 1. DR InterPro; IPR043502; DNA/RNA_pol_sf. DR InterPro; IPR000605; Helicase_SF3_ssDNA/RNA_vir. DR InterPro; IPR014759; Helicase_SF3_ssRNA_vir. DR InterPro; IPR044067; PCV_3C_PRO. DR InterPro; IPR009003; Peptidase_S1_PA. DR InterPro; IPR043504; Peptidase_S1_PA_chymotrypsin. DR InterPro; IPR001676; Picornavirus_capsid. DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase. DR InterPro; IPR033703; Rhv-like. DR InterPro; IPR001205; RNA-dir_pol_C. DR InterPro; IPR007094; RNA-dir_pol_PSvirus. DR InterPro; IPR029053; Viral_coat. DR Pfam; PF00680; RdRP_1; 1. DR Pfam; PF00073; Rhv; 1. DR Pfam; PF00910; RNA_helicase; 1. DR SUPFAM; SSF56672; DNA/RNA polymerases; 1. DR SUPFAM; SSF88633; Positive stranded ssRNA viruses; 2. DR SUPFAM; SSF50494; Trypsin-like serine proteases; 1. DR PROSITE; PS51874; PCV_3C_PRO; 1. DR PROSITE; PS50507; RDRP_SSRNA_POS; 1. DR PROSITE; PS51218; SF3_HELICASE_2; 1. PE 4: Predicted; KW ATP-binding {ECO:0000256|ARBA:ARBA00022840}; KW Capsid protein {ECO:0000256|ARBA:ARBA00022561}; KW Helicase {ECO:0000256|ARBA:ARBA00022806}; KW Host membrane {ECO:0000256|ARBA:ARBA00022870}; KW Hydrolase {ECO:0000256|ARBA:ARBA00022801}; KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius}; KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741}; KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695}; KW Protease {ECO:0000256|ARBA:ARBA00022670}; KW RNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022484}; KW Thiol protease {ECO:0000256|ARBA:ARBA00022807}; KW Transferase {ECO:0000256|ARBA:ARBA00022679}; KW Transmembrane {ECO:0000256|SAM:Phobius}; KW Transmembrane helix {ECO:0000256|SAM:Phobius}; KW Viral RNA replication {ECO:0000256|ARBA:ARBA00022953}; KW Virion {ECO:0000256|ARBA:ARBA00022561}. FT TRANSMEM 1134..1156 FT /note="Helical" FT /evidence="ECO:0000256|SAM:Phobius" FT TRANSMEM 1168..1186 FT /note="Helical" FT /evidence="ECO:0000256|SAM:Phobius" FT DOMAIN 1400..1569 FT /note="SF3 helicase" FT /evidence="ECO:0000259|PROSITE:PS51218" FT DOMAIN 1963..2169 FT /note="Peptidase C3" FT /evidence="ECO:0000259|PROSITE:PS51874" FT DOMAIN 2487..2616 FT /note="RdRp catalytic" FT /evidence="ECO:0000259|PROSITE:PS50507" FT REGION 1046..1068 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1046..1067 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT NON_TER 1 FT /evidence="ECO:0000313|EMBL:QSM07375.1" FT NON_TER 2788 FT /evidence="ECO:0000313|EMBL:QSM07375.1" SQ SEQUENCE 2788 AA; 310803 MW; DE3B8E4D0006E569 CRC64; DVSNPTQIAI NAARGEYQAI EEFAFSAYNF VDVAEMEETS GNATKTLTNT IKRRAAAMLG VSRAFKETEQ VLSVERCRVK EISEHEEIIA TTFEPLRDMK TPSRTTQGKD DPTLGKHRAK YNYMAIDSMR VSISSLLHQG DERECIMYVC DRRISDPFLG ALALIGFPLK GMSTHVYKTG RIVCFSKHEA IAPEHIQLYV YIKGAKLLRK DNAPFALNMK TSFIFGNNAE NLLKHDTTMD TDGNLISFLT QNQDIFGWLE TAQGGGYTPL RRQEGCSSHS NRSSLMKAWA TPKGNISQRF SGSMIPRSVQ PNEEGADVHG ATLHVGNSRD DLGRLNIGVS RAGVSSTDMD ERLHSVVDFV QDSEIQPITA NLEAFMSEPN VAASVETFER QFTRPIYVNT IEWKSTHDVG AEVFALENPG DFMGTPSLFG QFVKRAFCFK ADFEVNIMIS GNEAFSGAIK VCVDHMRRLY EAGRDDVQVF QSMPGETLHA SDTNGLKFSL PFESIHNMIS AHDLGSHNAL SRVSLRVIAK LAHAQQTAPT MHMTIQVYVK NLSAKHAMWK SLETTFPVSQ GTPLPSVVGN RYGSLNTSSN SMGPAEIRSI VTQKALIGTA TISSETKLRI IVATFAIHPM SSRTESGILK LSQLAALSAM FSYWRGSLIV HFEMTCSSAT RGKVLFSITP KGGAEMKRRA GLHLGMGAEF DIGTAISRKF EIPFVSTDDW ESLGDRGLMS AFEGIWDCPV AKIIVLHPIN SIGATTPSVD IRCYISPGRD FELRGRRHLG LRTSLRPLSL GTAQNRHLQE GSSFTLMGAM EVNSIESSCI IQIPCAPWYS KDSIDYALLQ NPLHWASRFF TFWKGDLSFR IVIKEGDELG PNWQAPITMW HNSQATFDKC KISKVEGKTL SKEGYPSEKL SLKQMNTMEI TAHDDQRYRW RLCKLHDTQD SALEGSSTKY TGHPPLSSHT GVVFVKFPKG GFKAKVKIYS KPEANFQYHL SGGVPSLKLD KLRPYSSPFY PNGKPSVLGH NSQLLVGRAQ ASLSLPSFIT QRYTHSAPPT LDNPSSTSSS TAEPEAETLV ETSKRKLGEL FSIVGAKIKE ALSSLFLSVS KSVVCSLISS MIDKALSIFS DVFSKIAATF KDMLATPITS LILGLSFTAI ACYSALKFAS ATVPDSMGHF KTLITAVSVA LSVIYWPTAL STILMNLEKL FETIEESCHA VHEYFFPNSV TNQPSSSDYP ATSCTTSGVN PDELRDGKAQ GASDCVIGLV GLAAYIRLCV TICNSLGENY MDPFLPKNME KSLRSVSGIS QGIKTLVDFK DYLYRVIMGN LMPTSSYTAV SKEVGFDLKE WFEDVERLTL HENRYHDLNN EHKIWEIRQA YSKGVIVMGV LSRVEMVHLA RMCERTFKLA KELLDETHRV KGVSGVRLDP FHLSLFGSPG VGKSFVMGRL LEDTLDLMGE PMADRSYSKT PNEEYWSGYY GQTAVKCDDL GQDLSKGFSP TYNQIIQMKT NNPFIVPMAD LANKGRTFTS KYIFSTTNVR DCGSKHGLAD PDAFLRRRDL LVHVTTEGPL IHGQVNHMRF TILDPLNPNE RDTRFPENMI YADFLCLCIF EMTQYFRKQE KVLETLRGKS LGSMHTTREI RSVLELLDPE LERKVREVME ESYVDATDEP LVDERMEVTR EDIERGLEPG RAQANSFSSY QNDFDGNPLP KPFCKLFAKY RAGFAKDKKK VLTDLEIDEF GAFLSMGDFV SLNPGRLDSN LVGLAKPIHR EFFDYIFHER LLFVAKEDFL YPFTMTTAAM INRLVHATRY EIVDGNEVMK LEDEYDRMAY QSLSIPEKTA YHLMLACIRA KTLKSAGWRT SLSTWFEWVK QTCANIIDSL APTVKFLIML ATSCGAMFLA FKGVQGVVGA IKFAFGNPPS DEDYIQMSLD SLTALGRKGK GKQRPSFGSG DELTARIERM ISRSALATGV SQGGRTRYET QNLLLQRMGH LRNEETGVSL VAINIGNGCI LTPLHVFQMA EEDDMLVFSW QGEKFFFVFT KDKVTQVGEL DLCVINTHSV PKRDMVLSIF MDEKELEAFS DIKCSYVCGP YLGEAGAHVE DDLVAIRAKQ FKYTVGSQMF ISVQGWAVAH TTLEGQCGSV LVSHDEAVNG KVFGMLVAGT TDHKGNKVGT YVPVTKQMII RALGKTCELK QGAATSSVCG VHIDPDLNVA LGLGEKLTSE AVDGRLGIFA EGTQFGAIHV VGRTKPAASV RTATKTSIVP SLIQHTLPRA PLTEPAILSA EDPRLEGKLF DPLIDGIKKY EHQAKPFREE WRRKILDTFS EEMEEWETQM VRVNFQNKEP TLDEIINGID GAEYYESINM STSEGYPLIL KRPSDADGKK WLFDFDESTG KYRMANADLI RNYEAYGAAL SKLHPIPLIC IESPKDERRA LKKIYTEPKT RLFSILPVEF NMHARRLYLD FNVVTMANRH KHGIMVGINP HSREWTELAL GLASFSPIGF NGDFANFDGM FHPDAFDMVC DLANKFYGDS RGAERKCLTE ALTNRLSLVK GSVLSIGGGG PSGFPMTVIF NSFINLFYLQ AAWIQLAKEH GRNDIAHPCF YKKFVRAYVY GDDNIVSIKE EVISWYNLCT VSSFLKDAFG VTMTDGEKNQ AHLAKPYGNI LEFDFLKRGF LADTQIPSLF HAPLNRTSIE EQVYWIRKGG DAAELLQANA ENALYEASHH GREYFDELRS VVREAYRRIC KDVVLPTYIM CRQRWLTTDL GEVSTNSIPS KVNILVSAQR NTFRGAAAQR YGGTSVRT //