ID   A0A2I3BPN6_MOUSE        Unreviewed;      1030 AA.
AC   A0A2I3BPN6;
DT   28-FEB-2018, integrated into UniProtKB/TrEMBL.
DT   28-FEB-2018, sequence version 1.
DT   24-JAN-2024, entry version 35.
DE   SubName: Full=TATA-box binding protein associated factor 4 {ECO:0000313|Ensembl:ENSMUSP00000153863.2};
GN   Name=Taf4 {ECO:0000313|Ensembl:ENSMUSP00000153863.2,
GN   ECO:0000313|MGI:MGI:2152346};
OS   Mus musculus (Mouse).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae;
OC   Murinae; Mus; Mus.
OX   NCBI_TaxID=10090 {ECO:0000313|Ensembl:ENSMUSP00000153863.2, ECO:0000313|Proteomes:UP000000589};
RN   [1] {ECO:0000313|Ensembl:ENSMUSP00000153863.2, ECO:0000313|Proteomes:UP000000589}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=C57BL/6J {ECO:0000313|Ensembl:ENSMUSP00000153863.2,
RC   ECO:0000313|Proteomes:UP000000589};
RX   PubMed=19468303; DOI=10.1371/journal.pbio.1000112;
RA   Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X.,
RA   Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y.,
RA   Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S.,
RA   Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R.,
RA   Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K.,
RA   Eichler E.E., Ponting C.P.;
RT   "Lineage-specific biology revealed by a finished genome assembly of the
RT   mouse.";
RL   PLoS Biol. 7:E1000112-E1000112(2009).
RN   [2] {ECO:0007829|PubMed:21183079}
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=21183079; DOI=10.1016/j.cell.2010.12.001;
RA   Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R.,
RA   Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.;
RT   "A tissue-specific atlas of mouse protein phosphorylation and expression.";
RL   Cell 143:1174-1189(2010).
RN   [3] {ECO:0007829|PubMed:24129315}
RP   IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
RX   PubMed=24129315;
RA   Guo A., Gu H., Zhou J., Mulhern D., Wang Y., Lee K.A., Yang V., Aguiar M.,
RA   Kornhauser J., Jia X., Ren J., Beausoleil S.A., Silva J.C., Vemulapalli V.,
RA   Bedford M.T., Comb M.J.;
RT   "Immunoaffinity enrichment and mass spectrometry analysis of protein
RT   methylation.";
RL   Mol. Cell. Proteomics 13:372-387(2014).
RN   [4] {ECO:0000313|Ensembl:ENSMUSP00000153863.2}
RP   IDENTIFICATION.
RC   STRAIN=C57BL/6J {ECO:0000313|Ensembl:ENSMUSP00000153863.2};
RG   Ensembl;
RL   Submitted (JUL-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the TAF4 family.
CC       {ECO:0000256|ARBA:ARBA00006178}.
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DR   AlphaFoldDB; A0A2I3BPN6; -.
DR   SMR; A0A2I3BPN6; -.
DR   jPOST; A0A2I3BPN6; -.
DR   ProteomicsDB; 359508; -.
DR   Antibodypedia; 1785; 106 antibodies from 24 providers.
DR   Ensembl; ENSMUST00000227325.2; ENSMUSP00000153863.2; ENSMUSG00000039117.17.
DR   AGR; MGI:2152346; -.
DR   MGI; MGI:2152346; Taf4.
DR   VEuPathDB; HostDB:ENSMUSG00000039117; -.
DR   GeneTree; ENSGT00390000011620; -.
DR   ChiTaRS; Taf4; mouse.
DR   Proteomes; UP000000589; Chromosome 2.
DR   Bgee; ENSMUSG00000039117; Expressed in secondary oocyte and 252 other cell types or tissues.
DR   ExpressionAtlas; A0A2I3BPN6; baseline and differential.
DR   GO; GO:0000785; C:chromatin; ISO:MGI.
DR   GO; GO:0005829; C:cytosol; ISO:MGI.
DR   GO; GO:0001673; C:male germ cell nucleus; IDA:MGI.
DR   GO; GO:0071339; C:MLL1 complex; ISO:MGI.
DR   GO; GO:0005654; C:nucleoplasm; ISO:MGI.
DR   GO; GO:0005634; C:nucleus; IDA:MGI.
DR   GO; GO:0032991; C:protein-containing complex; ISO:MGI.
DR   GO; GO:0005669; C:transcription factor TFIID complex; ISO:MGI.
DR   GO; GO:0033276; C:transcription factor TFTC complex; ISO:MGI.
DR   GO; GO:0017162; F:aryl hydrocarbon receptor binding; ISO:MGI.
DR   GO; GO:0003677; F:DNA binding; IDA:MGI.
DR   GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR   GO; GO:0006351; P:DNA-templated transcription; IDA:MGI.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; ISO:MGI.
DR   GO; GO:0042789; P:mRNA transcription by RNA polymerase II; ISO:MGI.
DR   GO; GO:0001541; P:ovarian follicle development; IMP:MGI.
DR   GO; GO:0060261; P:positive regulation of transcription initiation by RNA polymerase II; ISO:MGI.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; ISO:MGI.
DR   GO; GO:0051123; P:RNA polymerase II preinitiation complex assembly; ISO:MGI.
DR   GO; GO:0006366; P:transcription by RNA polymerase II; TAS:MGI.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; ISO:MGI.
DR   CDD; cd08045; TAF4; 1.
DR   Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR   Gene3D; 1.20.120.1110; TAFH/NHR1 domain; 1.
DR   InterPro; IPR009072; Histone-fold.
DR   InterPro; IPR045144; TAF4.
DR   InterPro; IPR007900; TAF4_C.
DR   InterPro; IPR037249; TAFH/NHR1_dom_sf.
DR   InterPro; IPR003894; TAFH_NHR1.
DR   PANTHER; PTHR15138:SF18; TATA-BOX-BINDING PROTEIN-ASSOCIATED FACTOR 4; 1.
DR   PANTHER; PTHR15138; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4; 1.
DR   Pfam; PF05236; TAF4; 1.
DR   Pfam; PF07531; TAFH; 1.
DR   SMART; SM00549; TAFH; 1.
DR   SUPFAM; SSF47113; Histone-fold; 1.
DR   SUPFAM; SSF158553; TAFH domain-like; 1.
DR   PROSITE; PS51119; TAFH; 1.
PE   1: Evidence at protein level;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Proteomics identification {ECO:0007829|EPD:A0A2I3BPN6,
KW   ECO:0007829|MaxQB:A0A2I3BPN6};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000589};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          548..645
FT                   /note="TAFH"
FT                   /evidence="ECO:0000259|PROSITE:PS51119"
FT   REGION          67..136
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          154..267
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          283..324
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          355..374
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          436..458
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          962..993
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        158..179
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        222..262
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1030 AA;  104161 MW;  F80F4832E8A12070 CRC64;
     MAAGSDLLDE VFFNSEVDEK VVSDLVGSLE SQLAASAAHH HHLAPRTPEL RAAAAGALGN
     HVVSGSPAGA AGAGPAASAE GAPAAAPEPP PAGRARPAGG GPRRPGSSSP RRLLVPAGPA
     PAPAKLRPLP EASAGPCPAA AAAAAATAAA VAGPDPAAAA PPAGPGASKP GPPGPPGPGA
     AQTLNGSAAP PTAPHAAPAV SPVNNGPAPP PAAGSVIQAA PAPAAPSPPA APAPAAPPPP
     APPAPVAPAR PPGHPAAPAP PVSPAAAAAA AAAAAAAQNG AAPAPAAASG GAAGLGQPGA
     GAQGAKAEAP KPGPGPGPGP AAAAAAAGVA GGGAAGSVLL GPAMPGALPG PAPGTPAGLA
     KGAAAATPSL PRTPAATTGA IRATLTPTVL APRLPQPPQN PTNIQNFQLP PGMVLVRSEN
     GQLLMIPQQA LAQMQAHAQA QPQSTMAPRP ATPTGAPPVQ ISTVQAPGTP IIARQVTPTT
     IIKQVSQAQT TVQPTTTLQR SPGVQPQLVL GGSAQPASLG TATAVQTGTP QRTVPGASTT
     STAATETMEN VKKCKSFLST LIKLASSGKQ STETAANVKD LVQNLLDGKI EAEDFTSRLY
     RELNSSPQPY LVPFLKRSLP ALRQLTPDSA AFIQQSQQQQ PPASQATTAL TAVVLSSSVQ
     RTAGKTAASV TSALQPPVIS LTQPTQVIQQ PPKPGALIRP PQVTLTQTPM VALRQPHNRI
     MLTTPQQIQL NQLQPVPVVK PTVLPGTKAL STVSAQAAAA QKNKLKEPGG GSFRDDDDIN
     DVASMAGVNL SEESARILAT NSELVGTLTR SCKDDTFLLP APLQRRILEI GKKHGITELH
     PDVVSYVSHA TQQRLQNLVE KISETAQQKN FSYKDDDRYE QASDVRAQLK FFEQLDQIEK
     QRKDEQEREI LMRAAKSRSR QEDPEQLRLK QKAKEMQQQE LAQMRQRDAN LTALAAIGPR
     KKRKVDCTGP GSGAEGSGPG AAVPGGSGVG TPRQFTRQRI TRVNLRDLIF CLENERETSH
     SLLLYKAFLK
//