ID A0A024CRE3_9INFA Unreviewed; 561 AA. AC A0A024CRE3; DT 09-JUL-2014, integrated into UniProtKB/TrEMBL. DT 09-JUL-2014, sequence version 1. DT 31-JAN-2018, entry version 28. DE RecName: Full=Hemagglutinin {ECO:0000256|HAMAP-Rule:MF_04072}; DE Contains: DE RecName: Full=Hemagglutinin HA2 chain {ECO:0000256|HAMAP-Rule:MF_04072}; DE Contains: DE RecName: Full=Hemagglutinin HA1 chain {ECO:0000256|HAMAP-Rule:MF_04072}; GN Name=HA {ECO:0000256|HAMAP-Rule:MF_04072, GN ECO:0000313|EMBL:AHZ37698.1}; OS Influenza A virus (A/mallard/Sweden/51582/2006(H10N4)). OC Viruses; ssRNA viruses; ssRNA negative-strand viruses; OC Orthomyxoviridae; Influenzavirus A. OX NCBI_TaxID=1476239 {ECO:0000313|EMBL:AHZ37698.1, ECO:0000313|Proteomes:UP000099384}; RN [1] {ECO:0000313|EMBL:AHZ37698.1, ECO:0000313|Proteomes:UP000099384} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A/mallard/Sweden/51582/2006 {ECO:0000313|EMBL:AHZ37698.1}; RG The NIAID Influenza Genome Sequencing Consortium; RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases. RN [2] {ECO:0000313|EMBL:AHZ37698.1, ECO:0000313|Proteomes:UP000099384} RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=A/mallard/Sweden/51582/2006 {ECO:0000313|EMBL:AHZ37698.1}; RA Wentworth D.E., Halpin R.A., Lin X., Bera J., Ransier A., Fedorova N., RA Tsitrin T., McLellan M., Stockwell T., Amedeo P., Appalla L., RA Bishop B., Edworthy P., Gupta N., Hoover J., Katzel D., Li K., RA Schobel S., Shrivastava S., Thovarai V., Wang S., Fouchier R., RA Osterhaus A., Olsen B., Wille M., Latorre-Margalef N., Tolf C., RA Bao Y., Sanders R., Zhdanov S., Kiryutin B., Lipman D.J., Tatusova T., RA Waldenstrom J.; RT "The NIAID Influenza Genome Sequencing Project."; RL Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases. CC -!- FUNCTION: Binds to sialic acid-containing receptors on the cell CC surface, bringing about the attachment of the virus particle to CC the cell. This attachment induces virion internalization either CC through clathrin-dependent endocytosis or through clathrin- and CC caveolin-independent pathway. Plays a major role in the CC determination of host range restriction and virulence. Class I CC viral fusion protein. Responsible for penetration of the virus CC into the cell cytoplasm by mediating the fusion of the membrane of CC the endocytosed virus particle with the endosomal membrane. Low pH CC in endosomes induces an irreversible conformational change in HA2, CC releasing the fusion hydrophobic peptide. Several trimers are CC required to form a competent fusion pore. {ECO:0000256|HAMAP- CC Rule:MF_04072, ECO:0000256|SAAS:SAAS00842802}. CC -!- FUNCTION: Binds to sialic acid-containing receptors on the cell CC surface, bringing about the attachment of the virus particle to CC the cell. This attachment induces virion internalization of about CC two third of the virus particles through clathrin-dependent CC endocytosis and about one third through a clathrin- and caveolin- CC independent pathway. Plays a major role in the determination of CC host range restriction and virulence. Class I viral fusion CC protein. Responsible for penetration of the virus into the cell CC cytoplasm by mediating the fusion of the membrane of the CC endocytosed virus particle with the endosomal membrane. Low pH in CC endosomes induces an irreversible conformational change in HA2, CC releasing the fusion hydrophobic peptide. Several trimers are CC required to form a competent fusion pore. CC {ECO:0000256|RuleBase:RU003324}. CC -!- SUBUNIT: Homotrimer of disulfide-linked HA1-HA2. CC {ECO:0000256|HAMAP-Rule:MF_04072, ECO:0000256|RuleBase:RU003324, CC ECO:0000256|SAAS:SAAS00070616}. CC -!- SUBCELLULAR LOCATION: Host apical cell membrane CC {ECO:0000256|HAMAP-Rule:MF_04072, ECO:0000256|SAAS:SAAS00554492}; CC Single-pass type I membrane protein {ECO:0000256|HAMAP- CC Rule:MF_04072, ECO:0000256|SAAS:SAAS00554492}. Virion membrane CC {ECO:0000256|HAMAP-Rule:MF_04072}; Single-pass type I membrane CC protein {ECO:0000256|HAMAP-Rule:MF_04072}. Note=Targeted to the CC apical plasma membrane in epithelial polarized cells through a CC signal present in the transmembrane domain. Associated with CC glycosphingolipid- and cholesterol-enriched detergent-resistant CC lipid rafts. {ECO:0000256|HAMAP-Rule:MF_04072}. CC -!- PTM: In natural infection, inactive HA is matured into HA1 and HA2 CC outside the cell by one or more trypsin-like, arginine-specific CC endoprotease secreted by the bronchial epithelial cells. One CC identified protease that may be involved in this process is CC secreted in lungs by Clara cells. {ECO:0000256|HAMAP- CC Rule:MF_04072}. CC -!- PTM: Palmitoylated. {ECO:0000256|HAMAP-Rule:MF_04072}. CC -!- SIMILARITY: Belongs to the influenza viruses hemagglutinin family. CC {ECO:0000256|HAMAP-Rule:MF_04072, ECO:0000256|RuleBase:RU003324, CC ECO:0000256|SAAS:SAAS00963381}. CC -!- CAUTION: Lacks conserved residue(s) required for the propagation CC of feature annotation. {ECO:0000256|HAMAP-Rule:MF_04072}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; CY183726; AHZ37698.1; -; Viral_cRNA. DR Proteomes; UP000099384; Genome. DR GO; GO:0020002; C:host cell plasma membrane; IEA:UniProtKB-SubCell. DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-UniRule. DR GO; GO:0019031; C:viral envelope; IEA:UniProtKB-UniRule. DR GO; GO:0055036; C:virion membrane; IEA:UniProtKB-SubCell. DR GO; GO:0046789; F:host cell surface receptor binding; IEA:UniProtKB-UniRule. DR GO; GO:0075512; P:clathrin-dependent endocytosis of virus by host cell; IEA:UniProtKB-UniRule. DR GO; GO:0039654; P:fusion of virus membrane with host endosome membrane; IEA:UniProtKB-UniRule. DR GO; GO:0019064; P:fusion of virus membrane with host plasma membrane; IEA:InterPro. DR GO; GO:0046761; P:viral budding from plasma membrane; IEA:UniProtKB-UniRule. DR GO; GO:0019062; P:virion attachment to host cell; IEA:UniProtKB-KW. DR Gene3D; 3.90.209.20; -; 1. DR HAMAP; MF_04072; INFV_HEMA; 1. DR InterPro; IPR008980; Capsid_hemagglutn. DR InterPro; IPR013828; Hemagglutn_HA1_a/b_dom_sf. DR InterPro; IPR000149; Hemagglutn_influenz_A. DR InterPro; IPR001364; Hemagglutn_influenz_A/B. DR Pfam; PF00509; Hemagglutinin; 1. DR PRINTS; PR00330; HEMAGGLUTN1. DR PRINTS; PR00329; HEMAGGLUTN12. DR SUPFAM; SSF49818; SSF49818; 1. PE 3: Inferred from homology; KW Clathrin- and caveolin-independent endocytosis of virus by host KW {ECO:0000256|HAMAP-Rule:MF_04072, ECO:0000256|SAAS:SAAS00452788}; KW Clathrin-mediated endocytosis of virus by host {ECO:0000256|HAMAP- KW Rule:MF_04072, ECO:0000256|SAAS:SAAS00453157}; KW Coiled coil {ECO:0000256|SAM:Coils}; KW Complete proteome {ECO:0000313|Proteomes:UP000099384}; KW Disulfide bond {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963411}; KW Fusion of virus membrane with host endosomal membrane KW {ECO:0000256|HAMAP-Rule:MF_04072, ECO:0000256|SAAS:SAAS00963419}; KW Fusion of virus membrane with host membrane {ECO:0000256|HAMAP- KW Rule:MF_04072, ECO:0000256|SAAS:SAAS00963379}; KW Glycoprotein {ECO:0000256|HAMAP-Rule:MF_04072}; KW Hemagglutinin {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|RuleBase:RU003324, ECO:0000256|SAAS:SAAS00963391}; KW Host cell membrane {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963415}; KW Host membrane {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963389}; KW Host-virus interaction {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963361}; KW Lipoprotein {ECO:0000256|HAMAP-Rule:MF_04072}; KW Membrane {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963418}; KW Palmitate {ECO:0000256|HAMAP-Rule:MF_04072}; KW Signal {ECO:0000256|HAMAP-Rule:MF_04072}; KW Transmembrane {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963395}; KW Transmembrane helix {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963387}; KW Viral attachment to host cell {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963390}; KW Viral envelope protein {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|RuleBase:RU003324, ECO:0000256|SAAS:SAAS00963382}; KW Viral penetration into host cytoplasm {ECO:0000256|HAMAP- KW Rule:MF_04072, ECO:0000256|SAAS:SAAS00963370}; KW Virion {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00070858}; KW Virus endocytosis by host {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963339}; KW Virus entry into host cell {ECO:0000256|HAMAP-Rule:MF_04072, KW ECO:0000256|SAAS:SAAS00963443}. FT TRANSMEM 525 550 Helical. {ECO:0000256|HAMAP-Rule: FT MF_04072}. FT COILED 378 416 {ECO:0000256|SAM:Coils}. FT SITE 340 341 Cleavage; by host. {ECO:0000256|HAMAP- FT Rule:MF_04072}. FT LIPID 557 557 S-palmitoyl cysteine; by host. FT {ECO:0000256|HAMAP-Rule:MF_04072}. FT LIPID 560 560 S-palmitoyl cysteine; by host. FT {ECO:0000256|HAMAP-Rule:MF_04072}. FT DISULFID 71 83 {ECO:0000256|HAMAP-Rule:MF_04072}. FT DISULFID 291 315 {ECO:0000256|HAMAP-Rule:MF_04072}. FT DISULFID 484 488 {ECO:0000256|HAMAP-Rule:MF_04072}. SQ SEQUENCE 561 AA; 62173 MW; 815D55CA9BF68A04 CRC64; MYKIVVIIAL LGAVKGLDKI CLGHHAVANG TIVKTLTNEQ EEVTNATETV ESTSLNRLCM KGRSHKDLGN CHPIGMLIGT PACDLHLTGT WNTLIERENA IAYCYPGATV NEEALRQKIM ESGGISKIST GFTYGSSINS AGTTKACMRN GGNSFYAELK WLVSKSKGQN FPRTTNTYRN TDTAEHLIMW GIHHPSSTQE KNDLYGTQSL SISVGSSTYQ NNFVPVVGAR PQVNGQSGRI DFHWTLVQPG DNITFSHNGG LIAPSRVSKL IGRGLGIQSD APIDNNCESK CFWRGGSINT RLPFQNLSPR TVGQCPKYVN KKSLMLATGM RNVPEVMQGR GLFGAIAGFI ENGWEGMVDG WYGFRHQNAQ GTGQAADYKS TQAAIDQITG KLNRLIEKTN TEFESIESEF SEIEHQIGNV INWTKDSITD IWTYQAELLV AMENQHTIDM ADSEMLNLYE RVRKQLRQNA EEDGKGCFEI YHACDDSCME SIRNNTYDHS QYREEALLNR LNINPVKLSS GYKDIILWFS FGASCFVLLA VVMGLVFFCL KNGNMRCTIC I //