{"results":[{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"C6ZIM2","uniProtkbId":"C6ZIM2_9ARAE","entryAudit":{"firstPublicDate":"2009-09-22","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2009-09-22","entryVersion":43,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Typhonium huense","taxonId":578897,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ACO24367.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Araceae","Aroideae","Areae","Typhonium"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ACO24367.1"}],"value":"matK"},"synonyms":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39227.1"}],"value":"trnK"}]}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":341,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":369,"modifier":"EXACT"},"end":{"value":488,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ACO24367.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-98I4O3DF6FA4M","citationType":"journal article","authors":["Cusimano N.","Barrett M.D.","Hetterscheid W.L.A.","Renner S.S."],"title":"A phylogeny of the Areae (Araceae) implies that Typhonium, Sauromatum, and the Australian species of Typhonium are distinct clades.","publicationDate":"2010","journal":"Taxon","firstPage":"439","lastPage":"447","volume":"59"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ACO24367.1"}]},{"referenceNumber":2,"citation":{"id":"24500949","citationType":"journal article","authors":["Sousa A.","Cusimano N.","Renner S.S."],"citationCrossReferences":[{"database":"PubMed","id":"24500949"}],"title":"Combining FISH and model-based predictions to understand chromosome evolution in Typhonium (Araceae).","publicationDate":"2014","journal":"Ann. Bot.","firstPage":"669","lastPage":"680","volume":"113"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39227.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"EU886557","properties":[{"key":"ProteinId","value":"ACO24367.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"EMBL","id":"KC434091","properties":[{"key":"ProteinId","value":"AHA39227.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"C6ZIM2","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MEELKGYLEKSRSIQQHFLYPLLFQEYIYALAHNHGLNVNGSIFYEPPEISGYDKKFSSLLAKRLITRMYQQNYLINSVNDSNQNRFVGHNKNFYSQTISEGFAVIMEIPFSLRLVSSLEEKKEIPKSQNLRSIHSIFPFFEDKLSHLNCVCVSDILIPYPVHLEILVQILQCWIQDVPSLHLLRFFFQEYYNWNNLITPKKSNCYGFSKDNPRLFLFLYNSYVVECESILVFLRKQSSYLRSTSYGIFLERTHFYEKIEQNLVVLCCNDFQKTLWLFKDPFIHYVRYQGKSILASKGTHLLMKKWKSYFVNFWQCHFHFWSQPSRIHISQFSKFSFHFLGYLSSVPKNPLAVKSQMLESSFFIDTVTKKFETIVPIIPMIGSLSKAKFCNVSGNPISKPVWADLSDSDIIDRFGRICRNLSHYYSGSSKKQSLYRIKYILRLSCARTLARKHKSTVRAFLQRLGSEFLEEFFTEEEKVLSLILPRISYPLHKLYRERIWYLDIIRINDLVNHL","length":514,"molWeight":60857,"crc64":"17E544BA6D34AC75","md5":"325672BEBD7B433C1EA9886FED4D4BD1"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI0001B0687A"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"W5RNX6","uniProtkbId":"W5RNX6_9ARAE","entryAudit":{"firstPublicDate":"2014-04-16","lastAnnotationUpdateDate":"2026-11-04","lastSequenceUpdateDate":"2014-04-16","entryVersion":34,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Typhonium huense","taxonId":578897,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39247.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Araceae","Aroideae","Areae","Typhonium"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39247.1"}],"value":"Phytochrome C"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39247.1"}],"value":"PhyC"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00002479"}],"value":"Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion"}],"commentType":"FUNCTION"},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00008235"}],"value":"Belongs to the phytochrome family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":2,"modifier":"EXACT"},"end":{"value":175,"modifier":"EXACT"}},"description":"Phytochrome chromophore attachment site","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50046"}]},{"type":"Region","location":{"start":{"value":316,"modifier":"EXACT"},"end":{"value":338,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":316,"modifier":"EXACT"},"end":{"value":330,"modifier":"EXACT"}},"description":"Basic and acidic residues","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39247.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":338,"modifier":"EXACT"},"end":{"value":338,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39247.1"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022991"}],"id":"KW-0157","category":"Ligand","name":"Chromophore"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022543"}],"id":"KW-0600","category":"Molecular function","name":"Photoreceptor protein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023170"}],"id":"KW-0675","category":"Molecular function","name":"Receptor"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022606"}],"id":"KW-0716","category":"Biological process","name":"Sensory transduction"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023163"}],"id":"KW-0804","category":"Biological process","name":"Transcription"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023015"}],"id":"KW-0805","category":"Biological process","name":"Transcription regulation"}],"references":[{"referenceNumber":1,"citation":{"id":"24500949","citationType":"journal article","authors":["Sousa A.","Cusimano N.","Renner S.S."],"citationCrossReferences":[{"database":"PubMed","id":"24500949"}],"title":"Combining FISH and model-based predictions to understand chromosome evolution in Typhonium (Araceae).","publicationDate":"2014","journal":"Ann. Bot.","firstPage":"669","lastPage":"680","volume":"113"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AHA39247.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KC434111","properties":[{"key":"ProteinId","value":"AHA39247.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"W5RNX6","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009584","properties":[{"key":"GoTerm","value":"P:detection of visible light"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0006355","properties":[{"key":"GoTerm","value":"P:regulation of DNA-templated transcription"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"FunFam","id":"3.30.450.270:FF:000001","properties":[{"key":"EntryName","value":"Phytochrome"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.30.450.270","properties":[{"key":"EntryName","value":"-"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.30.450.40","properties":[{"key":"EntryName","value":"-"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR003018","properties":[{"key":"EntryName","value":"GAF"}]},{"database":"InterPro","id":"IPR029016","properties":[{"key":"EntryName","value":"GAF-like_dom_sf"}]},{"database":"InterPro","id":"IPR013515","properties":[{"key":"EntryName","value":"PHY_dom"}]},{"database":"InterPro","id":"IPR016132","properties":[{"key":"EntryName","value":"Phyto_chromo_attachment"}]},{"database":"InterPro","id":"IPR013516","properties":[{"key":"EntryName","value":"Phyto_chromo_BS"}]},{"database":"InterPro","id":"IPR001294","properties":[{"key":"EntryName","value":"Phytochrome"}]},{"database":"InterPro","id":"IPR043150","properties":[{"key":"EntryName","value":"Phytochrome_PHY_sf"}]},{"database":"PANTHER","id":"PTHR47876","properties":[{"key":"EntryName","value":"OS08G0260000 PROTEIN"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR47876:SF3","properties":[{"key":"EntryName","value":"PHYTOCHROME 1"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01590","properties":[{"key":"EntryName","value":"GAF"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00360","properties":[{"key":"EntryName","value":"PHY"},{"key":"MatchStatus","value":"1"}]},{"database":"PRINTS","id":"PR01033","properties":[{"key":"EntryName","value":"PHYTOCHROME"}]},{"database":"SMART","id":"SM00065","properties":[{"key":"EntryName","value":"GAF"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF55781","properties":[{"key":"EntryName","value":"GAF domain-like"},{"key":"MatchStatus","value":"2"}]},{"database":"PROSITE","id":"PS00245","properties":[{"key":"EntryName","value":"PHYTOCHROME_1"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50046","properties":[{"key":"EntryName","value":"PHYTOCHROME_2"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"GNISLLCDVLVREVRDLTGYDRVMAYKFHEDEHGEVISECRRSDLEPYLGLHYPATDIPQASRFLFMKNKVRMICDCSSQRVKVIQDNRLTQTLSLCGSTLRAPHGCHSQYMSNMGSIASLVMSVTINEDDEEDDAGISGQQQKGRKLWGLVVCHHCSPRFVPFPLRYACEFLMQVFAIQLNKEVELAAQTREKHILRTQTLLCDMLLMDAPVAIFTQSPNVMDLVKCDGAALYFHNQFWLLGITPTEGQIRDIARWLIDCHSSNTGLSTDSLSEAGYPGASTLGDAVCGLAAIKISSKDFVFWFRSHTAKEIKWGGAKHDPVGKDDNGRKMHPRSSF","length":338,"molWeight":37907,"crc64":"C7747D645CC50A74","md5":"5A2BDD4BAD3D453A499FF60663931FD5"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":1,"Region":1,"Compositional bias":1,"Non-terminal residue":2},"uniParcId":"UPI0003E959FE"}}]}