{"results":[{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A386GYC8","uniProtkbId":"A0A386GYC8_9CONI","entryAudit":{"firstPublicDate":"2018-12-05","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2018-12-05","entryVersion":15,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AYD38143.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AYD38143.1"}],"value":"matK"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":330,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":359,"modifier":"EXACT"},"end":{"value":467,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AYD38143.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AYD38143.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"30157290","citationType":"journal article","authors":["Leslie A.B.","Beaulieu J.","Holman G.","Campbell C.S.","Mei W.","Raubeson L.R.","Mathews S."],"citationCrossReferences":[{"database":"PubMed","id":"30157290"},{"database":"DOI","id":"10.1002/ajb2.1143"}],"title":"An overview of extant conifer evolution from the perspective of the fossil record.","publicationDate":"2018","journal":"Am. J. Bot.","firstPage":"1531","lastPage":"1544","volume":"105"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AYD38143.1"}],"value":"CSC_BBG","type":"STRAIN"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AYD38143.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MH230817","properties":[{"key":"ProteinId","value":"AYD38143.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A0A386GYC8","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MDEFHRYGKEDSSWQQCFLYPLFFQEDLYAISHDHYLDGSSSSEPMEHFSFNDQLSFLTVKRLIGRIREQNHSIGLFVNCDPNPLVDRNKSSYFESVLEGLTLVLEVPFSTRSKYSVQGIKEWKSFRSIHSIFPFLEEKFPHSNYILDTRIPYSIHPEFLVRTFRRWIQDAPSLHPLRSVLYEYRNSPENLQRSIIVAPRVNTRFFLFLWNHYVYECESILVPLLKRSFQSRSSSHGSFPERTLFDRKIKHIIRISHRNSLKSIWSLKDPKIHYVRYGERSIIAIKGTHLLVKKCRYYLPIFRQCYFHLWSEPYRVCSHQLSKNCSSFLGYSLRVRMKPLLVRTKMLGELFITDLITDEFYPIVPIVSIIGLLAREKFCDISGRPISKLAWTSLTDDDILDRFDRIWRNFFHYYSGSFGRDGLYRIKYILSLSCAKTLACKHKSTIRVVRKELGPELFKKSFSKEREFDSPAFSSKAVARSQRERIWHSDIPQINPLANSWQKIQDLK","length":508,"molWeight":60228,"crc64":"2E1A16895175D10D","md5":"FE2C187A4D7B4EDF61E1DE206187FA33"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI000EB69675"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLG4","uniProtkbId":"A7YLG4_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2025-10-08","lastSequenceUpdateDate":"2007-10-23","entryVersion":51,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"value":"Photosystem II reaction center protein T"},"shortNames":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"value":"PSII-T"}]}},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}],"value":"psbT"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"value":"Found at the monomer-monomer interface of the photosystem II (PS II) dimer, plays a role in assembly and dimerization of PSII. PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation"}],"commentType":"FUNCTION"},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"value":"PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Psb30/Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes"}],"commentType":"SUBUNIT"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"value":"Plastid, chloroplast thylakoid membrane","id":"SL-0058"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"value":"Single-pass membrane protein","id":"SL-9904"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00008658"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"value":"Belongs to the PsbT family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Transmembrane","location":{"start":{"value":6,"modifier":"EXACT"},"end":{"value":23,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023136"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022531"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"id":"KW-0602","category":"Biological process","name":"Photosynthesis"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023276"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"id":"KW-0604","category":"Cellular component","name":"Photosystem II"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023078"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"id":"KW-0793","category":"Cellular component","name":"Thylakoid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022692"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022989"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00808"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10314.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983611","properties":[{"key":"ProteinId","value":"ABL10314.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A7YLG4","properties":[{"key":"Description","value":"-"}]},{"database":"SMR","id":"A7YLG4","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009535","properties":[{"key":"GoTerm","value":"C:chloroplast thylakoid membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0009539","properties":[{"key":"GoTerm","value":"C:photosystem II reaction center"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0015979","properties":[{"key":"GoTerm","value":"P:photosynthesis"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_00808","properties":[{"key":"EntryName","value":"PSII_PsbT"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR001743","properties":[{"key":"EntryName","value":"PSII_PsbT"}]},{"database":"InterPro","id":"IPR037268","properties":[{"key":"EntryName","value":"PSII_PsbT_sf"}]},{"database":"PANTHER","id":"PTHR36411","properties":[{"key":"EntryName","value":"-"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR36411:SF2","properties":[{"key":"EntryName","value":"PHOTOSYSTEM II REACTION CENTER PROTEIN T"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01405","properties":[{"key":"EntryName","value":"PsbT"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF161029","properties":[{"key":"EntryName","value":"Photosystem II reaction center protein T, PsbT"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MEALVYTFLLVSTLGIIFFAIFFREPPKVPTKGGK","length":35,"molWeight":3932,"crc64":"37958E5F72A37275","md5":"58CDBB658AB3AEE468F76F3B55F6BE1A"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBUNIT":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Transmembrane":1},"uniParcId":"UPI000017DDAD"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLG6","uniProtkbId":"A7YLG6_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2025-10-08","lastSequenceUpdateDate":"2007-10-23","entryVersion":47,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"value":"Protein PsbN"}}},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}],"value":"psbN"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"value":"May play a role in photosystem I and II biogenesis"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004411"}],"value":"Plastid membrane","id":"SL-0213"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004411"}],"value":"Single-pass membrane protein","id":"SL-9904"}},{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"value":"Plastid, chloroplast thylakoid membrane","id":"SL-0058"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"value":"Single-pass membrane protein","id":"SL-9904"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"value":"Belongs to the PsbN family"}],"commentType":"SIMILARITY"},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"value":"Originally thought to be a component of PSII; based on experiments in Synechocystis, N.tabacum and barley, and its absence from PSII in T.elongatus and T.vulcanus, this is probably not true"}],"commentType":"CAUTION"}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023136"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"id":"KW-0793","category":"Cellular component","name":"Thylakoid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022692"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022989"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00293"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10315.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983611","properties":[{"key":"ProteinId","value":"ABL10315.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A7YLG6","properties":[{"key":"Description","value":"-"}]},{"database":"SMR","id":"A7YLG6","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009535","properties":[{"key":"GoTerm","value":"C:chloroplast thylakoid membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0015979","properties":[{"key":"GoTerm","value":"P:photosynthesis"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"HAMAP","id":"MF_00293","properties":[{"key":"EntryName","value":"PSII_PsbN"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR003398","properties":[{"key":"EntryName","value":"PSII_PsbN"}]},{"database":"PANTHER","id":"PTHR35326","properties":[{"key":"EntryName","value":"PROTEIN PSBN"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR35326:SF3","properties":[{"key":"EntryName","value":"PROTEIN PSBN"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF02468","properties":[{"key":"EntryName","value":"PsbN"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"METATLVAISISCLLVSFTGYALYTAFGQPSEQLRDPFEDHED","length":43,"molWeight":4767,"crc64":"6CD45161F01703ED","md5":"F759F2A964AD11F6C819F5AD4A22C280"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1,"CAUTION":1},"uniParcId":"UPI00001D70F7"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLL8","uniProtkbId":"A7YLL8_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2007-10-23","entryVersion":58,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00021253"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"Cytochrome b6-f complex subunit 8"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00031459"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"Cytochrome b6-f complex subunit PetN"}},{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00031982"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"Cytochrome b6-f complex subunit VIII"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}],"value":"petN"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00003068"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions"}],"commentType":"FUNCTION"},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00025834"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"The 4 large subunits of the cytochrome b6-f complex are cytochrome b6, subunit IV (17 kDa polypeptide, PetD), cytochrome f and the Rieske protein, while the 4 small subunits are PetG, PetL, PetM and PetN. The complex functions as a dimer"}],"commentType":"SUBUNIT"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004167"}],"value":"Membrane","id":"SL-0162"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004167"}],"value":"Single-pass membrane protein","id":"SL-9904"}},{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"Plastid, chloroplast thylakoid membrane","id":"SL-0058"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"Single-pass membrane protein","id":"SL-9904"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00010969"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"value":"Belongs to the PetN family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Transmembrane","location":{"start":{"value":6,"modifier":"EXACT"},"end":{"value":24,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022982"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"id":"KW-0249","category":"Biological process","name":"Electron transport"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023136"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"id":"KW-0602","category":"Biological process","name":"Photosynthesis"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"id":"KW-0793","category":"Cellular component","name":"Thylakoid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022692"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022989"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022448"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00395"}],"id":"KW-0813","category":"Biological process","name":"Transport"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10344.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983629","properties":[{"key":"ProteinId","value":"ABL10344.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A7YLL8","properties":[{"key":"Description","value":"-"}]},{"database":"SMR","id":"A7YLL8","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009535","properties":[{"key":"GoTerm","value":"C:chloroplast thylakoid membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0009512","properties":[{"key":"GoTerm","value":"C:cytochrome b6f complex"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0009055","properties":[{"key":"GoTerm","value":"F:electron transfer activity"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0017004","properties":[{"key":"GoTerm","value":"P:cytochrome complex assembly"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_00395","properties":[{"key":"EntryName","value":"Cytb6_f_PetN"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR036143","properties":[{"key":"EntryName","value":"Cytochr_b6-f_cplx_su8_sf"}]},{"database":"InterPro","id":"IPR005497","properties":[{"key":"EntryName","value":"Cytochrome_b6-f_cplx_su8"}]},{"database":"Pfam","id":"PF03742","properties":[{"key":"EntryName","value":"PetN"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF103451","properties":[{"key":"EntryName","value":"PetN subunit of the cytochrome b6f complex"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MDIVGITWAALMVVFTFSLSLVVWGRSGL","length":29,"molWeight":3170,"crc64":"3B0215516534DA61","md5":"6F2698966B091CDA59924AD3277EFD03"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBUNIT":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Transmembrane":1},"uniParcId":"UPI00001316CE"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLM0","uniProtkbId":"A7YLM0_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2007-10-23","entryVersion":46,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"value":"Photosystem II reaction center protein M"},"shortNames":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"value":"PSII-M"}]}},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}],"value":"psbM"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"value":"One of the components of the core complex of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation. This subunit is found at the monomer-monomer interface"}],"commentType":"FUNCTION"},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"value":"PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Psb30/Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes"}],"commentType":"SUBUNIT"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004167"}],"value":"Membrane","id":"SL-0162"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004167"}],"value":"Single-pass membrane protein","id":"SL-9904"}},{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"value":"Plastid, chloroplast thylakoid membrane","id":"SL-0058"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"value":"Single-pass membrane protein","id":"SL-9904"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"value":"Belongs to the PsbM family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Transmembrane","location":{"start":{"value":6,"modifier":"EXACT"},"end":{"value":27,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023136"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022531"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"id":"KW-0602","category":"Biological process","name":"Photosynthesis"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023276"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"id":"KW-0604","category":"Cellular component","name":"Photosystem II"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022469"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"id":"KW-0674","category":"Cellular component","name":"Reaction center"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"id":"KW-0793","category":"Cellular component","name":"Thylakoid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022692"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022989"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_00438"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10345.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983629","properties":[{"key":"ProteinId","value":"ABL10345.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A7YLM0","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009535","properties":[{"key":"GoTerm","value":"C:chloroplast thylakoid membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0009523","properties":[{"key":"GoTerm","value":"C:photosystem II"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0019684","properties":[{"key":"GoTerm","value":"P:photosynthesis, light reaction"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"HAMAP","id":"MF_00438","properties":[{"key":"EntryName","value":"PSII_PsbM"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR007826","properties":[{"key":"EntryName","value":"PSII_PsbM"}]},{"database":"InterPro","id":"IPR037269","properties":[{"key":"EntryName","value":"PSII_PsbM_sf"}]},{"database":"NCBIfam","id":"TIGR03038","properties":[{"key":"EntryName","value":"PS_II_psbM"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR35774","properties":[{"key":"EntryName","value":"PHOTOSYSTEM II REACTION CENTER PROTEIN M"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR35774:SF1","properties":[{"key":"EntryName","value":"PHOTOSYSTEM II REACTION CENTER PROTEIN M"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF05151","properties":[{"key":"EntryName","value":"PsbM"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF161033","properties":[{"key":"EntryName","value":"Photosystem II reaction center protein M, PsbM"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MEVNILAFIAVALFISIPTAFLLIPYVKTVSGSSASS","length":37,"molWeight":3872,"crc64":"949AEA9FF9251834","md5":"81D580B155713E85465C07934E91D26E"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBUNIT":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Transmembrane":1},"uniParcId":"UPI00015C0E77"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLE9","uniProtkbId":"A7YLE9_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2026-11-04","lastSequenceUpdateDate":"2007-10-23","entryVersion":38,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}],"value":"NADH dehydrogenase subunit 5"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}],"value":"nad5"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004141"}],"value":"Membrane","id":"SL-0162"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004141"}],"value":"Multi-pass membrane protein","id":"SL-9909"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00008200"}],"value":"Belongs to the complex I subunit 5 family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":37,"modifier":"EXACT"}},"description":"NADH-Ubiquinone oxidoreductase (complex I) chain 5 N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF00662"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":73,"modifier":"EXACT"},"end":{"value":73,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}],"geneEncodingType":"Mitochondrion"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023136"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}],"id":"KW-0496","category":"Cellular component","name":"Mitochondrion"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023027"}],"id":"KW-0520","category":"Ligand","name":"NAD"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022967"}],"id":"KW-1278","category":"Molecular function","name":"Translocase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022692"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022989"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022448"}],"id":"KW-0813","category":"Biological process","name":"Transport"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10308.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983605","properties":[{"key":"ProteinId","value":"ABL10308.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A7YLE9","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0016020","properties":[{"key":"GoTerm","value":"C:membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0008137","properties":[{"key":"GoTerm","value":"F:NADH dehydrogenase (ubiquinone) activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0042773","properties":[{"key":"GoTerm","value":"P:ATP synthesis coupled electron transport"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0015990","properties":[{"key":"GoTerm","value":"P:electron transport coupled proton transport"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"InterPro","id":"IPR003945","properties":[{"key":"EntryName","value":"NU5C-like"}]},{"database":"InterPro","id":"IPR001516","properties":[{"key":"EntryName","value":"Proton_antipo_N"}]},{"database":"PANTHER","id":"PTHR42829","properties":[{"key":"EntryName","value":"NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR42829:SF2","properties":[{"key":"EntryName","value":"NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00662","properties":[{"key":"EntryName","value":"Proton_antipo_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCHSSIPTFFTPMSVTGDNFIQLFPGWEGVGPAPYSS","length":73,"molWeight":8042,"crc64":"702F3AE84685E4BD","md5":"45E5B934F154F13F174592E5D631A8DB"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":1,"Non-terminal residue":2},"uniParcId":"UPI00015C0E6B"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLI7","uniProtkbId":"A7YLI7_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2007-10-23","entryVersion":15,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"4: Predicted","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"value":"Ribosomal protein S12"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"value":"rps12"}}],"features":[{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":9,"modifier":"EXACT"},"end":{"value":9,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"id":"KW-0687","category":"Molecular function","name":"Ribonucleoprotein"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"id":"KW-0689","category":"Molecular function","name":"Ribosomal protein"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10326.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983623","properties":[{"key":"ProteinId","value":"ABL10326.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]}],"sequence":{"value":"RRGVCARVY","length":9,"molWeight":1079,"crc64":"66D8D40DDEA2C864","md5":"8C038BE412C60A699448DDCFDCEBF33E"},"extraAttributes":{"countByFeatureType":{"Non-terminal residue":2},"uniParcId":"UPI00015C0E70"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLI9","uniProtkbId":"A7YLI9_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2026-01-28","lastSequenceUpdateDate":"2007-10-23","entryVersion":16,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"4: Predicted","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}],"value":"Uncharacterized protein"}}]},"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10327.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983623","properties":[{"key":"ProteinId","value":"ABL10327.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A7YLI9","properties":[{"key":"Description","value":"-"}]}],"sequence":{"value":"MLILPRKRNNRVSYLANPRITCRYCMNRSCNESIYYFMIQE","length":41,"molWeight":5062,"crc64":"2C823EC945779BA1","md5":"986BF781B1C2AC3E2DAACD7326AAE769"},"extraAttributes":{"uniParcId":"UPI00015C0E71"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A7YLJ0","uniProtkbId":"A7YLJ0_9CONI","entryAudit":{"firstPublicDate":"2007-10-23","lastAnnotationUpdateDate":"2026-01-28","lastSequenceUpdateDate":"2007-10-23","entryVersion":16,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Cedrus brevifolia","taxonId":400568,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Cedrus"]},"proteinExistence":"4: Predicted","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}],"value":"Uncharacterized protein"}}]},"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-9BKSL78S29PJ9","citationType":"submission","authors":["Qiao C.-Y.","Ran J.-H.","Wang X.-Q."],"publicationDate":"SEP-2006","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}]},{"referenceNumber":2,"citation":{"id":"17611189","citationType":"journal article","authors":["Qiao C.Y.","Ran J.H.","Li Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"17611189"},{"database":"DOI","id":"10.1093/aob/mcm134"}],"title":"Phylogeny and biogeography of Cedrus (Pinaceae) inferred from sequences of seven paternal chloroplast and maternal mitochondrial DNA regions.","publicationDate":"2007","journal":"Ann. Bot.","firstPage":"573","lastPage":"580","volume":"100"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}],"value":"Leaf","type":"TISSUE"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ABL10328.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"DQ983623","properties":[{"key":"ProteinId","value":"ABL10328.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A7YLJ0","properties":[{"key":"Description","value":"-"}]}],"sequence":{"value":"MKPMIFSHSQYKVPVLVYPEDAYPKGIMVGKVAVAKAIGTSIF","length":43,"molWeight":4713,"crc64":"3C8EA2EE5FC590BF","md5":"F9E8A6A59AE469F073A12EA383E884ED"},"extraAttributes":{"uniParcId":"UPI00015C0E72"}}]}