{"results":[{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A3G1DL58","uniProtkbId":"A0A3G1DL58_ULOHU","entryAudit":{"firstPublicDate":"2019-02-13","lastAnnotationUpdateDate":"2026-11-04","lastSequenceUpdateDate":"2019-02-13","entryVersion":25,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Ulota hutchinsiae","commonName":"Hutchins' ulota moss","synonyms":["Orthotrichum hutchinsiae"],"taxonId":279761,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56371.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Bryophyta","Bryophytina","Bryopsida","Bryidae","Bryanae","Orthotrichales","Orthotrichaceae","Ulota"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00035158"}],"value":"Small ribosomal subunit protein uS4c"}},"flag":"Fragment"},"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00007465"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU003699"}],"value":"Belongs to the universal ribosomal protein uS4 family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":84,"modifier":"EXACT"}},"description":"Small ribosomal subunit protein uS4 N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"SMART","id":"SM01390"}]},{"type":"Domain","location":{"start":{"value":85,"modifier":"EXACT"},"end":{"value":149,"modifier":"EXACT"}},"description":"RNA-binding S4","evidences":[{"evidenceCode":"ECO:0000259","source":"SMART","id":"SM00363"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56371.1"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56371.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56371.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56371.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023274"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU003699"}],"id":"KW-0687","category":"Molecular function","name":"Ribonucleoprotein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022980"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU003699"}],"id":"KW-0689","category":"Molecular function","name":"Ribosomal protein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00182"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022730"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00182"}],"id":"KW-0699","category":"Molecular function","name":"rRNA-binding"}],"references":[{"referenceNumber":1,"citation":{"id":"27159721","citationType":"journal article","authors":["Tessler M.","Cunningham S.W.","Clark T.A."],"citationCrossReferences":[{"database":"PubMed","id":"27159721"}],"title":"Noteworthy habitat and phylogeny updates for eastern US Ulota (Orthotrichaceae, Bryophyta).","publicationDate":"2016","journal":"Mitochondrial DNA A DNA Mapp Seq Anal","firstPage":"0","lastPage":"0","volume":"0"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56370.1"}],"value":"Hu1","type":"STRAIN"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56371.1"}],"value":"Hu4","type":"STRAIN"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56371.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KU726010","properties":[{"key":"ProteinId","value":"ANG56370.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"EMBL","id":"KU726011","properties":[{"key":"ProteinId","value":"ANG56371.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A0A3G1DL58","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0015935","properties":[{"key":"GoTerm","value":"C:small ribosomal subunit"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0019843","properties":[{"key":"GoTerm","value":"F:rRNA binding"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0003735","properties":[{"key":"GoTerm","value":"F:structural constituent of ribosome"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0042274","properties":[{"key":"GoTerm","value":"P:ribosomal small subunit biogenesis"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"GO","id":"GO:0006412","properties":[{"key":"GoTerm","value":"P:translation"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"CDD","id":"cd00165","properties":[{"key":"EntryName","value":"S4"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"3.10.290.10:FF:000081","properties":[{"key":"EntryName","value":"30S ribosomal protein S4, chloroplastic"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.1050.10","properties":[{"key":"EntryName","value":"Ribosomal Protein S4 Delta 41, Chain A, domain 1"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.10.290.10","properties":[{"key":"EntryName","value":"RNA-binding S4 domain"},{"key":"MatchStatus","value":"1"}]},{"database":"HAMAP","id":"MF_01306_B","properties":[{"key":"EntryName","value":"Ribosomal_uS4_B"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR022801","properties":[{"key":"EntryName","value":"Ribosomal_uS4"}]},{"database":"InterPro","id":"IPR005709","properties":[{"key":"EntryName","value":"Ribosomal_uS4_bact"}]},{"database":"InterPro","id":"IPR018079","properties":[{"key":"EntryName","value":"Ribosomal_uS4_CS"}]},{"database":"InterPro","id":"IPR001912","properties":[{"key":"EntryName","value":"Ribosomal_uS4_N"}]},{"database":"InterPro","id":"IPR002942","properties":[{"key":"EntryName","value":"S4_RNA-bd"}]},{"database":"InterPro","id":"IPR036986","properties":[{"key":"EntryName","value":"S4_RNA-bd_sf"}]},{"database":"NCBIfam","id":"NF003717","properties":[{"key":"EntryName","value":"rpsD"},{"key":"MatchStatus","value":"1"}]},{"database":"NCBIfam","id":"TIGR01017","properties":[{"key":"EntryName","value":"rpsD_bact"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR11831","properties":[{"key":"EntryName","value":"30S 40S RIBOSOMAL PROTEIN"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR11831:SF4","properties":[{"key":"EntryName","value":"SMALL RIBOSOMAL SUBUNIT PROTEIN US4M"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00163","properties":[{"key":"EntryName","value":"Ribosomal_S4"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01479","properties":[{"key":"EntryName","value":"S4"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM01390","properties":[{"key":"EntryName","value":"Ribosomal_S4"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00363","properties":[{"key":"EntryName","value":"S4"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF55174","properties":[{"key":"EntryName","value":"Alpha-L RNA-binding motif"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS00632","properties":[{"key":"EntryName","value":"RIBOSOMAL_S4"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50889","properties":[{"key":"EntryName","value":"S4"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"GPRVKIVRRLGVLPGLTNKTPQLKSSSVNQSTSNKKISQYRIRLEEKQKLRFHYGITERQLLNYVRIARKAKGSTGEVLLQLLEMRLDNVIFRLGMAPTIPGARQLVNHRHIIVNHRIVDIPSYRCKPQDFITIKNRQKSQDIITKNIDFYQKSKIPNHLTYNSLEKKGFVNQILDRELIGLKINELLVVEYYSRQA","length":197,"molWeight":22930,"crc64":"FB70E2BAA460C681","md5":"3BB430C91CE1B01B675407F20EC55C3E"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2,"Non-terminal residue":1},"uniParcId":"UPI000F0C2463"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A3G1DL72","uniProtkbId":"A0A3G1DL72_ULOHU","entryAudit":{"firstPublicDate":"2019-02-13","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2019-02-13","entryVersion":21,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Ulota hutchinsiae","commonName":"Hutchins' ulota moss","synonyms":["Orthotrichum hutchinsiae"],"taxonId":279761,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Bryophyta","Bryophytina","Bryopsida","Bryidae","Bryanae","Orthotrichales","Orthotrichaceae","Ulota"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}],"value":"NADH dehydrogenase subunit 5"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}],"value":"nad5"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004141"}],"value":"Membrane","id":"SL-0162"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004141"}],"value":"Multi-pass membrane protein","id":"SL-9909"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00008200"}],"value":"Belongs to the complex I subunit 5 family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Transmembrane","location":{"start":{"value":17,"modifier":"EXACT"},"end":{"value":39,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}]},{"type":"Transmembrane","location":{"start":{"value":51,"modifier":"EXACT"},"end":{"value":75,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}]},{"type":"Domain","location":{"start":{"value":2,"modifier":"EXACT"},"end":{"value":91,"modifier":"EXACT"}},"description":"NADH:quinone oxidoreductase/Mrp antiporter transmembrane","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF00361"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":92,"modifier":"EXACT"},"end":{"value":92,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}],"geneEncodingType":"Mitochondrion"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023136"},{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}],"id":"KW-0496","category":"Cellular component","name":"Mitochondrion"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023027"}],"id":"KW-0520","category":"Ligand","name":"NAD"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022967"}],"id":"KW-1278","category":"Molecular function","name":"Translocase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022692"},{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022989"},{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"}],"references":[{"referenceNumber":1,"citation":{"id":"27159721","citationType":"journal article","authors":["Tessler M.","Cunningham S.W.","Clark T.A."],"citationCrossReferences":[{"database":"PubMed","id":"27159721"}],"title":"Noteworthy habitat and phylogeny updates for eastern US Ulota (Orthotrichaceae, Bryophyta).","publicationDate":"2016","journal":"Mitochondrial DNA A DNA Mapp Seq Anal","firstPage":"0","lastPage":"0","volume":"0"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}],"value":"Hu4","type":"STRAIN"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"ANG56387.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KU726031","properties":[{"key":"ProteinId","value":"ANG56387.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A0A3G1DL72","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0016020","properties":[{"key":"GoTerm","value":"C:membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0008137","properties":[{"key":"GoTerm","value":"F:NADH dehydrogenase (ubiquinone) activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0042773","properties":[{"key":"GoTerm","value":"P:ATP synthesis coupled electron transport"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0015990","properties":[{"key":"GoTerm","value":"P:electron transport coupled proton transport"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"InterPro","id":"IPR001750","properties":[{"key":"EntryName","value":"ND/Mrp_TM"}]},{"database":"InterPro","id":"IPR003945","properties":[{"key":"EntryName","value":"NU5C-like"}]},{"database":"PANTHER","id":"PTHR42829","properties":[{"key":"EntryName","value":"NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR42829:SF2","properties":[{"key":"EntryName","value":"NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00361","properties":[{"key":"EntryName","value":"Proton_antipo_M"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"ANKAAIKAMLVNRVGDFGLALGIMGCFTIFQTVDFSTIFARASTFSEPHHYFIFCNMRFHAITVICILLFIGAVGKSAQIGLHTRLPDAMEG","length":92,"molWeight":10054,"crc64":"4A3F47CD42EBA0AF","md5":"4B5FC71DA01A8DE98124CD8B091669C2"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Transmembrane":2,"Domain":1,"Non-terminal residue":2},"uniParcId":"UPI000F0C07D5"}}]}