{"results":[{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A4Y6JLC4","uniProtkbId":"A0A4Y6JLC4_9ASPA","entryAudit":{"firstPublicDate":"2019-09-18","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2019-09-18","entryVersion":17,"sequenceVersion":1},"annotationScore":3.0,"organism":{"scientificName":"Goodyera brachystegia","taxonId":2584348,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Asparagales","Orchidaceae","Orchidoideae","Cranichideae","Goodyerinae","Goodyera"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00017725"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"value":"Ribulose bisphosphate carboxylase large chain"},"ecNumbers":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00012287"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"value":"4.1.1.39"}]},"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}],"value":"rbcL"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00025664"}],"value":"RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site"}],"commentType":"FUNCTION"},{"commentType":"CATALYTIC ACTIVITY","reaction":{"name":"2 (2R)-3-phosphoglycerate + 2 H(+) = D-ribulose 1,5-bisphosphate + CO2 + H2O","reactionCrossReferences":[{"database":"Rhea","id":"RHEA:23124"},{"database":"ChEBI","id":"CHEBI:15377"},{"database":"ChEBI","id":"CHEBI:15378"},{"database":"ChEBI","id":"CHEBI:16526"},{"database":"ChEBI","id":"CHEBI:57870"},{"database":"ChEBI","id":"CHEBI:58272"}],"ecNumber":"4.1.1.39","evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00049469"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10114"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}]}},{"commentType":"CATALYTIC ACTIVITY","reaction":{"name":"D-ribulose 1,5-bisphosphate + O2 = 2-phosphoglycolate + (2R)-3-phosphoglycerate + 2 H(+)","reactionCrossReferences":[{"database":"Rhea","id":"RHEA:36631"},{"database":"ChEBI","id":"CHEBI:15378"},{"database":"ChEBI","id":"CHEBI:15379"},{"database":"ChEBI","id":"CHEBI:57870"},{"database":"ChEBI","id":"CHEBI:58033"},{"database":"ChEBI","id":"CHEBI:58272"}],"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00048059"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}]}},{"commentType":"COFACTOR","cofactors":[{"name":"Mg(2+)","evidences":[{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"cofactorCrossReference":{"database":"ChEBI","id":"CHEBI:18420"}}],"note":{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"value":"Binds 1 Mg(2+) ion per subunit."}]}},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00025888"}],"value":"Heterohexadecamer of 8 large chains and 8 small chains; disulfide-linked. The disulfide link is formed within the large subunit homodimers"}],"commentType":"SUBUNIT"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006204"}],"value":"Belongs to the RuBisCO large chain family. Type I subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":17,"modifier":"EXACT"},"end":{"value":137,"modifier":"EXACT"}},"description":"Ribulose bisphosphate carboxylase large subunit ferrodoxin-like N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF02788"}]},{"type":"Domain","location":{"start":{"value":147,"modifier":"EXACT"},"end":{"value":428,"modifier":"EXACT"}},"description":"Ribulose bisphosphate carboxylase large subunit C-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF00016"}]},{"type":"Binding site","location":{"start":{"value":196,"modifier":"EXACT"},"end":{"value":196,"modifier":"EXACT"}},"description":"","featureCrossReferences":[{"database":"ChEBI","id":"CHEBI:18420"}],"evidences":[{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10114"}],"ligand":{"name":"Mg(2+)","id":"ChEBI:CHEBI:18420"}},{"type":"Modified residue","location":{"start":{"value":194,"modifier":"EXACT"},"end":{"value":194,"modifier":"EXACT"}},"description":"N6-carboxylysine","evidences":[{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10114"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":430,"modifier":"EXACT"},"end":{"value":430,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022567"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0113","category":"Biological process","name":"Calvin cycle"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023300"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0120","category":"Biological process","name":"Carbon dioxide fixation"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023157"}],"id":"KW-1015","category":"PTM","name":"Disulfide bond"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023239"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0456","category":"Molecular function","name":"Lyase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022842"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0460","category":"Ligand","name":"Magnesium"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022723"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0479","category":"Ligand","name":"Metal-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023033"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0503","category":"Molecular function","name":"Monooxygenase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023002"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0560","category":"Molecular function","name":"Oxidoreductase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023238"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0601","category":"Biological process","name":"Photorespiration"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022531"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000302"}],"id":"KW-0602","category":"Biological process","name":"Photosynthesis"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"}],"references":[{"referenceNumber":1,"citation":{"id":"31229601","citationType":"journal article","authors":["Chen S.P.","Tian H.Z.","Guan Q.X.","Zhai J.W.","Zhang G.Q.","Chen L.J.","Liu Z.J.","Lan S.R.","Li M.H."],"citationCrossReferences":[{"database":"PubMed","id":"31229601"},{"database":"DOI","id":".1016/j.ympev.2019.106542"}],"title":"Molecular systematics of Goodyerinae (Cranichideae, Orchidoideae, Orchidaceae) based on multiple nuclear and plastid regions.","publicationDate":"2019","journal":"Mol. Phylogenet. Evol.","firstPage":"106542","lastPage":"106542","volume":"106542"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}]},{"referenceNumber":2,"citation":{"id":"CI-FRB06INGV6144","citationType":"submission","authors":["Li M.-H."],"publicationDate":"JAN-2019","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82545.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MK451842","properties":[{"key":"ProteinId","value":"QDF82545.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A0A4Y6JLC4","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0000287","properties":[{"key":"GoTerm","value":"F:magnesium ion binding"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0016984","properties":[{"key":"GoTerm","value":"F:ribulose-bisphosphate carboxylase activity"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-EC"}]},{"database":"GO","id":"GO:0015977","properties":[{"key":"GoTerm","value":"P:carbon fixation"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"CDD","id":"cd08212","properties":[{"key":"EntryName","value":"RuBisCO_large_I"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"3.20.20.110:FF:000003","properties":[{"key":"EntryName","value":"Ribulose bisphosphate carboxylase large chain"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"3.30.70.150:FF:000001","properties":[{"key":"EntryName","value":"Ribulose bisphosphate carboxylase large chain"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.20.20.110","properties":[{"key":"EntryName","value":"Ribulose bisphosphate carboxylase, large subunit, C-terminal domain"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.30.70.150","properties":[{"key":"EntryName","value":"RuBisCO large subunit, N-terminal domain"},{"key":"MatchStatus","value":"1"}]},{"database":"HAMAP","id":"MF_01338","properties":[{"key":"EntryName","value":"RuBisCO_L_type1"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR033966","properties":[{"key":"EntryName","value":"RuBisCO"}]},{"database":"InterPro","id":"IPR020878","properties":[{"key":"EntryName","value":"RuBisCo_large_chain_AS"}]},{"database":"InterPro","id":"IPR000685","properties":[{"key":"EntryName","value":"RuBisCO_lsu_C"}]},{"database":"InterPro","id":"IPR036376","properties":[{"key":"EntryName","value":"RuBisCO_lsu_C_sf"}]},{"database":"InterPro","id":"IPR017443","properties":[{"key":"EntryName","value":"RuBisCO_lsu_fd_N"}]},{"database":"InterPro","id":"IPR036422","properties":[{"key":"EntryName","value":"RuBisCO_lsu_N_sf"}]},{"database":"InterPro","id":"IPR020888","properties":[{"key":"EntryName","value":"RuBisCO_lsuI"}]},{"database":"NCBIfam","id":"NF003252","properties":[{"key":"EntryName","value":"PRK04208.1"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR42704","properties":[{"key":"EntryName","value":"RIBULOSE BISPHOSPHATE CARBOXYLASE"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR42704:SF15","properties":[{"key":"EntryName","value":"RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00016","properties":[{"key":"EntryName","value":"RuBisCO_large"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF02788","properties":[{"key":"EntryName","value":"RuBisCO_large_N"},{"key":"MatchStatus","value":"1"}]},{"database":"SFLD","id":"SFLDG01052","properties":[{"key":"EntryName","value":"RuBisCO"},{"key":"MatchStatus","value":"1"}]},{"database":"SFLD","id":"SFLDS00014","properties":[{"key":"EntryName","value":"RuBisCO"},{"key":"MatchStatus","value":"1"}]},{"database":"SFLD","id":"SFLDG00301","properties":[{"key":"EntryName","value":"RuBisCO-like_proteins"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF51649","properties":[{"key":"EntryName","value":"RuBisCo, C-terminal domain"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF54966","properties":[{"key":"EntryName","value":"RuBisCO, large subunit, small (N-terminal) domain"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS00157","properties":[{"key":"EntryName","value":"RUBISCO_LARGE"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"KASVGFKAGVKDYKLTYYTPDYETKSTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYHIEPVVGEENQYIAYVAYPLDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPSYSKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAESLYKAQAETGEIKGHYLNATAGTCEEMIKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHGGTVVGKLEGERDMTLGFVDLLRDDYIEKDRNRGIFFTQDWVSMPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDL","length":430,"molWeight":47599,"crc64":"FA7E2716EFE9CB07","md5":"680FA52623E7A87EA25C3AB80A8FA6DB"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"CATALYTIC ACTIVITY":2,"COFACTOR":1,"SUBUNIT":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2,"Binding site":1,"Modified residue":1,"Non-terminal residue":2},"uniParcId":"UPI001163DCAE"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A126LAK8","uniProtkbId":"A0A126LAK8_9ASPA","entryAudit":{"firstPublicDate":"2016-05-11","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2016-05-11","entryVersion":18,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Goodyera brachystegia","taxonId":2584348,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78010.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Asparagales","Orchidaceae","Orchidoideae","Cranichideae","Goodyerinae","Goodyera"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78010.1"}],"value":"matK"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":13,"modifier":"EXACT"},"end":{"value":342,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":369,"modifier":"EXACT"},"end":{"value":479,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78010.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"26927946","citationType":"journal article","authors":["Hu C.","Tian H.","Li H.","Hu A.","Xing F.","Bhattacharjee A.","Hsu T.","Kumar P.","Chung S."],"citationCrossReferences":[{"database":"PubMed","id":"26927946"}],"title":"Phylogenetic Analysis of a 'Jewel Orchid' Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions.","publicationDate":"2016","journal":"PLoS ONE","firstPage":"E0150366","lastPage":"E0150366","volume":"11"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78010.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KT385593","properties":[{"key":"ProteinId","value":"AMD78010.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MSVNNRITKIFRLKKETFRQQNFLYPLLLQESIYSLAHDHSFKNLLFYEPVEFFGYDKKSSLVLVKRLINRMYQQKSLISSVNYSNQNEFWGHKNYFSFPFFFQILSXGFGVILEIPLSSRLVSSLEEKKISKSQNLRSIHSIFPFLEDKLSHFNSVLDLLIPHPIHLEILIQILQCWIKDVPSLHLLRLIFHEYHNLKSIITSKKSIHVFSKKKRFFWFLHNFYVYECEYIFLFLRKQSSYLRSTSFEVFLERTIFYVKIESILVVYFNSFHRILWFLKDPLIHYVQYQGKIILASKGTLFLMKKWNFHVVNFWQFYFHFWSQPYRIHIKQLPNYSFSFLGYFLSVSKKTLVVRNQMLENSFLINTLTKKLDTIAPVISLIGSLSKAQFCTISGHPISKPIWTDLSDSDIIDRFCRKCRNLCRYHSGSSKKKVLYRIKYILRLSCARTLARKHKSTVRTFMRKLGSVFLEEIFMEEEQAFSFILFQKRPFPLHLHGLHRERIWYLDIIRINDLVDFS","length":518,"molWeight":62218,"crc64":"0CA55352F9D2D582","md5":"106114A394FD942F449C806DC73FE5E2"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI00078D4FC9"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A126LAL1","uniProtkbId":"A0A126LAL1_9ASPA","entryAudit":{"firstPublicDate":"2016-05-11","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2016-05-11","entryVersion":18,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Goodyera brachystegia","taxonId":2584348,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78011.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Asparagales","Orchidaceae","Orchidoideae","Cranichideae","Goodyerinae","Goodyera"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78011.1"}],"value":"matK"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":13,"modifier":"EXACT"},"end":{"value":341,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":382,"modifier":"EXACT"},"end":{"value":480,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78011.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"26927946","citationType":"journal article","authors":["Hu C.","Tian H.","Li H.","Hu A.","Xing F.","Bhattacharjee A.","Hsu T.","Kumar P.","Chung S."],"citationCrossReferences":[{"database":"PubMed","id":"26927946"}],"title":"Phylogenetic Analysis of a 'Jewel Orchid' Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions.","publicationDate":"2016","journal":"PLoS ONE","firstPage":"E0150366","lastPage":"E0150366","volume":"11"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78011.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KT385594","properties":[{"key":"ProteinId","value":"AMD78011.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MSVNNRITKIFRLKKETFRQQNFLYPLLLQESIYSLAHDHSFKNLLFYEPVEFFGYDKKSSLVLVKRLINRMYQQKSLISSVNYSNQNEFWGHKNYFSFHFFFQILSEGFGVILEIPLSSRLVSSLEEKKIPKSQNLRSIHSIFPFLEDKLSHFNSVLDLLIPHPIHLEILIQILQCWIKDVPSLHLLRLIFHEYHNLKSIITSKKSIHVFSKKKRFFWFLHNFYVYECEYIFLFLRKQSSYLQSTSFEVFLERTIFYVKIESILVVYFNSFHRILWFLKDPLIHYVQYQGKIILASKGTLFLMKKWNFHVVNFWQFYFHFWAQPYRTHIKQLPNYSFSFRGNFLRVSKKTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGSLSKAKFCTISGHPISKPIWTDLSDSDIIDRFCRKCRNLCRSHSGSSKKKVLYRIKYILRLSCARTLARKHKSTVRTFMRKLGSVFLEEFFMEEEQAFSFILFQKRPFPLHLHGLHRERIWYLDIIRINDLVDFS","length":518,"molWeight":62226,"crc64":"44B9ACF7C9B72E72","md5":"B0CB38ABABBF691DFDC9CA53E2A45B0D"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI00078BD851"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A126LAL2","uniProtkbId":"A0A126LAL2_9ASPA","entryAudit":{"firstPublicDate":"2016-05-11","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2016-05-11","entryVersion":18,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Goodyera brachystegia","taxonId":2584348,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78013.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Asparagales","Orchidaceae","Orchidoideae","Cranichideae","Goodyerinae","Goodyera"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78013.1"}],"value":"matK"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":13,"modifier":"EXACT"},"end":{"value":342,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":369,"modifier":"EXACT"},"end":{"value":480,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78013.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"26927946","citationType":"journal article","authors":["Hu C.","Tian H.","Li H.","Hu A.","Xing F.","Bhattacharjee A.","Hsu T.","Kumar P.","Chung S."],"citationCrossReferences":[{"database":"PubMed","id":"26927946"}],"title":"Phylogenetic Analysis of a 'Jewel Orchid' Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions.","publicationDate":"2016","journal":"PLoS ONE","firstPage":"E0150366","lastPage":"E0150366","volume":"11"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78013.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KT385596","properties":[{"key":"ProteinId","value":"AMD78013.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A0A126LAL2","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MSVNNRITKIFRLKKETFRQQNFLYPLLLQESIYSLAHDHSFKNLFFYEPVEFFGYDKKSSLVLVKRLINRMYQQKSLISSVNYSNQNEFWGHKNYFSFHFFFQILSEGFGVILEIPLSSRLVSSLEEKKIPKSQNLRSIHSIFPFLEDKLSHFNSVLDLLIPHPIHLEILIQILQCWIKDVPSLHLLRLIFHEYHNLKSIITSKKSIHVFSKKKRFFWFLHNFYVYECEYIFLFLRKQSSYLRSTSFEVFLERTIFYVKIESILVVYFNSFHRILWFLKDPLIHYVQYQGKIILASKGTLFLMKKWNFHVVNFWQFYFHFWSQPYRIHIKQLPNYSFSFLGYFLSVSKKTLVVRNQMLENSFLINTLTKKLDTIAPVISLIGSLSKAKFCTISGHPISKPIWTDLSDSDIIDRFCQKCRNLCRYHSGSSKKKVLYRIKYILRLSCARTLARKHKSTVRTFMRKLGSVFLEEFFMEEEQAFSFILFQKRPFPLHLHGLHRERIWYLDIIRINDLVDFS","length":518,"molWeight":62326,"crc64":"1A3DCC7E87DA889F","md5":"7A3ADFC554F3AD12ACA5EF76D94AAEFF"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI00078CB52B"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A126LAL4","uniProtkbId":"A0A126LAL4_9ASPA","entryAudit":{"firstPublicDate":"2016-05-11","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2016-05-11","entryVersion":18,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Goodyera brachystegia","taxonId":2584348,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78012.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Asparagales","Orchidaceae","Orchidoideae","Cranichideae","Goodyerinae","Goodyera"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78012.1"}],"value":"matK"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":13,"modifier":"EXACT"},"end":{"value":342,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":369,"modifier":"EXACT"},"end":{"value":480,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78012.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"26927946","citationType":"journal article","authors":["Hu C.","Tian H.","Li H.","Hu A.","Xing F.","Bhattacharjee A.","Hsu T.","Kumar P.","Chung S."],"citationCrossReferences":[{"database":"PubMed","id":"26927946"}],"title":"Phylogenetic Analysis of a 'Jewel Orchid' Genus Goodyera (Orchidaceae) Based on DNA Sequence Data from Nuclear and Plastid Regions.","publicationDate":"2016","journal":"PLoS ONE","firstPage":"E0150366","lastPage":"E0150366","volume":"11"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AMD78012.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KT385595","properties":[{"key":"ProteinId","value":"AMD78012.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MSVNNRIPKIFRLKKETFRQQNFLYPLLLQESIYSLAHDHSFKNLLFYEPVEFFGYDKKSSLVLVKRLINRMYQQKSLISSVNYSNQNEFWGHKNYFSFHFFFQILSEGFGVILEIPLSSRLVSSLEXKKIPKSQNLRSIHSIFPFLEDKLSHFNSVLDLLIPHPIHLEILIQILQCWIKDVPSLHLLRLIFHEYHNLKSIITSKKSIHVFSKKKRFFWFLHNFYVYECEYIFLFLRKQSSYLXXXXXXXXXXXXXXXXXIESILVVYFNSFHRILWFLKDPLIHYVQYQGKIILASKGTLFLMKKWNFHVVNFWQFYFHFWSQPYRIHIKQLPNYSFSFLGYFLSVSKKTLVVRNQMLENSFLINTLTKKLDTIAPVISLIGSLSKAKFCTISGHPISKPIWTDLSDSDIIDRFCRKCRNLCRYHSGSSKKKVLYRIKYILRLSCARTLARKHKSTVRTFMRKLGSVFLEEFFMEEEQAFSFILFQKRPFPLHLHGLHRERIWYLDIIRINDLVDFS","length":518,"molWeight":62087,"crc64":"A4E0E9FA1BAD93BD","md5":"8DAA4A7107DFE96E9B7941BD290CC585"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI00078E819A"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A4Y6JKZ8","uniProtkbId":"A0A4Y6JKZ8_9ASPA","entryAudit":{"firstPublicDate":"2019-09-18","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2019-09-18","entryVersion":12,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Goodyera brachystegia","taxonId":2584348,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82503.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Asparagales","Orchidaceae","Orchidoideae","Cranichideae","Goodyerinae","Goodyera"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82503.1"}],"value":"matK"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004229"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":13,"modifier":"EXACT"},"end":{"value":342,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":370,"modifier":"EXACT"},"end":{"value":480,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82503.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022528"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"31229601","citationType":"journal article","authors":["Chen S.P.","Tian H.Z.","Guan Q.X.","Zhai J.W.","Zhang G.Q.","Chen L.J.","Liu Z.J.","Lan S.R.","Li M.H."],"citationCrossReferences":[{"database":"PubMed","id":"31229601"},{"database":"DOI","id":".1016/j.ympev.2019.106542"}],"title":"Molecular systematics of Goodyerinae (Cranichideae, Orchidoideae, Orchidaceae) based on multiple nuclear and plastid regions.","publicationDate":"2019","journal":"Mol. Phylogenet. Evol.","firstPage":"106542","lastPage":"106542","volume":"106542"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82503.1"}]},{"referenceNumber":2,"citation":{"id":"CI-FRB06INGV6144","citationType":"submission","authors":["Li M.-H."],"publicationDate":"JAN-2019","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82503.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MK451800","properties":[{"key":"ProteinId","value":"QDF82503.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A0A4Y6JKZ8","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MSVNNRIPKIFRLKKETFRQQNFLYPLLLQESIYSLAHDPSFKNLLFYEPVEFFGYDKKSSLVLVKRLINRMYQQKSLISSVNYSNQNEFWGHKNYFSFHFFFQILSEGFGVILEIPLSSRLVSSLEEKKIPKSQNLRSIHSIFPFLEEKLSHFNSGLNLLIPHPIHLEILIQILQWWIKNVPSLHLLRLIFHEYHNLNSIITSKKSIHVFSKKKRFFWVLHNFYVYECEYIFLFLRKQSSYLRSTSFEVFLERTNFYGKIESILVVYFNSFHRILWFLKDPLIHYVQYQGKIILASKGTLFLMKKWNFHVVNFWQFYFHFWSQPYRIHIKQLPNYSFSFLGYFLSVSKKTLVVRNQMLENSFLINTLTKKLDTIAPVIFLIGSLSKAKFCTISGHPISKPIWTDLSDSDIIDRFCRKCRNLCRYPSGSSKKKVLYRIKYILRLSCARTLARKHKSTVRTFMRKLGSVFLEEFFMEEEQAFSFILFQKRPFPLHLHGLHRERIWYLDIIRINDLVDFS","length":518,"molWeight":62246,"crc64":"29A227120F565E6C","md5":"5C72EE7BA7AAF0D56D9382119FA2FBFC"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI00116214FD"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A4Y6JL32","uniProtkbId":"A0A4Y6JL32_9ASPA","entryAudit":{"firstPublicDate":"2019-09-18","lastAnnotationUpdateDate":"2025-02-05","lastSequenceUpdateDate":"2019-09-18","entryVersion":13,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Goodyera brachystegia","taxonId":2584348,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","Liliopsida","Asparagales","Orchidaceae","Orchidoideae","Cranichideae","Goodyerinae","Goodyera"]},"proteinExistence":"4: Predicted","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}],"value":"PsaB"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}],"value":"psaB"}}],"features":[{"type":"Transmembrane","location":{"start":{"value":25,"modifier":"EXACT"},"end":{"value":44,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}]},{"type":"Transmembrane","location":{"start":{"value":109,"modifier":"EXACT"},"end":{"value":131,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}]},{"type":"Transmembrane","location":{"start":{"value":152,"modifier":"EXACT"},"end":{"value":173,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":320,"modifier":"EXACT"},"end":{"value":320,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Phobius"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"}],"references":[{"referenceNumber":1,"citation":{"id":"31229601","citationType":"journal article","authors":["Chen S.P.","Tian H.Z.","Guan Q.X.","Zhai J.W.","Zhang G.Q.","Chen L.J.","Liu Z.J.","Lan S.R.","Li M.H."],"citationCrossReferences":[{"database":"PubMed","id":"31229601"},{"database":"DOI","id":".1016/j.ympev.2019.106542"}],"title":"Molecular systematics of Goodyerinae (Cranichideae, Orchidoideae, Orchidaceae) based on multiple nuclear and plastid regions.","publicationDate":"2019","journal":"Mol. Phylogenet. Evol.","firstPage":"106542","lastPage":"106542","volume":"106542"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}]},{"referenceNumber":2,"citation":{"id":"CI-FRB06INGV6144","citationType":"submission","authors":["Li M.-H."],"publicationDate":"JAN-2019","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QDF82524.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MK451821","properties":[{"key":"ProteinId","value":"QDF82524.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"A0A4Y6JL32","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009535","properties":[{"key":"GoTerm","value":"C:chloroplast thylakoid membrane"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"GO","id":"GO:0015979","properties":[{"key":"GoTerm","value":"P:photosynthesis"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"Gene3D","id":"1.20.1130.10","properties":[{"key":"EntryName","value":"Photosystem I PsaA/PsaB"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR001280","properties":[{"key":"EntryName","value":"PSI_PsaA/B"}]},{"database":"InterPro","id":"IPR036408","properties":[{"key":"EntryName","value":"PSI_PsaA/B_sf"}]},{"database":"PANTHER","id":"PTHR30128","properties":[{"key":"EntryName","value":"OUTER MEMBRANE PROTEIN, OMPA-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR30128:SF19","properties":[{"key":"EntryName","value":"PHOTOSYSTEM I P700 CHLOROPHYLL A APOPROTEIN A1-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00223","properties":[{"key":"EntryName","value":"PsaA_PsaB"},{"key":"MatchStatus","value":"1"}]},{"database":"PRINTS","id":"PR00257","properties":[{"key":"EntryName","value":"PHOTSYSPSAAB"}]},{"database":"SUPFAM","id":"SSF81558","properties":[{"key":"EntryName","value":"Photosystem I subunits PsaA/PsaB"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"TAHDFESHDDITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFESWIQDPLHVRPIAHAIWDPHFGQPAVEAFTRGGAIGPVNIAYSGVYQWWYTIGLRTNGDLYTGALFLLFLSAISLIASWLHLQPKWKPSVSWFKNAESRLNHHLSGLFGVSSLAWTGHLIHVAIPGSRGEYVRWNNFLDILPYPQGLGPLFLGQWNLYAQNPDSSSHLFGTSQGAGTAILTLLGGFHPQTQSLWLTDIAHHHLAIAFLFLVAGHMYRTNFGIGHSIKDLLETHIPPGGRLGRGHKGLYDTINNSLHFQLGPALASLGGITS","length":320,"molWeight":35538,"crc64":"53A7E36A080C5B1B","md5":"78BAEA5F40BC9FB8984AA4BE2BC25ADF"},"extraAttributes":{"countByFeatureType":{"Transmembrane":3,"Non-terminal residue":2},"uniParcId":"UPI0011641BE0"}}]}