{"results":[{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A126WUT4","uniProtkbId":"A0A126WUT4_9CONI","entryAudit":{"firstPublicDate":"2016-05-11","lastAnnotationUpdateDate":"2026-11-04","lastSequenceUpdateDate":"2016-05-11","entryVersion":41,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76375.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00012513"}],"value":"non-specific serine/threonine protein kinase"},"ecNumbers":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00012513"}],"value":"2.7.11.1"}]}},"comments":[{"commentType":"CATALYTIC ACTIVITY","reaction":{"name":"L-seryl-[protein] + ATP = O-phospho-L-seryl-[protein] + ADP + H(+)","reactionCrossReferences":[{"database":"Rhea","id":"RHEA:17989"},{"database":"Rhea","id":"RHEA-COMP:9863"},{"database":"Rhea","id":"RHEA-COMP:11604"},{"database":"ChEBI","id":"CHEBI:15378"},{"database":"ChEBI","id":"CHEBI:29999"},{"database":"ChEBI","id":"CHEBI:30616"},{"database":"ChEBI","id":"CHEBI:83421"},{"database":"ChEBI","id":"CHEBI:456216"}],"ecNumber":"2.7.11.1","evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00048679"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10027"}]}},{"commentType":"CATALYTIC ACTIVITY","reaction":{"name":"L-threonyl-[protein] + ATP = O-phospho-L-threonyl-[protein] + ADP + H(+)","reactionCrossReferences":[{"database":"Rhea","id":"RHEA:46608"},{"database":"Rhea","id":"RHEA-COMP:11060"},{"database":"Rhea","id":"RHEA-COMP:11605"},{"database":"ChEBI","id":"CHEBI:15378"},{"database":"ChEBI","id":"CHEBI:30013"},{"database":"ChEBI","id":"CHEBI:30616"},{"database":"ChEBI","id":"CHEBI:61977"},{"database":"ChEBI","id":"CHEBI:456216"}],"ecNumber":"2.7.11.1","evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00047899"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10027"}]}},{"commentType":"COFACTOR","cofactors":[{"name":"FMN","evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00001917"}],"cofactorCrossReference":{"database":"ChEBI","id":"CHEBI:58210"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00009903"}],"value":"Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family"}],"commentType":"SIMILARITY"},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00159"}],"value":"Belongs to the protein kinase superfamily. Ser/Thr protein kinase family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":268,"modifier":"EXACT"},"end":{"value":341,"modifier":"EXACT"}},"description":"PAS","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50112"}]},{"type":"Domain","location":{"start":{"value":342,"modifier":"EXACT"},"end":{"value":396,"modifier":"EXACT"}},"description":"PAC","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50113"}]},{"type":"Domain","location":{"start":{"value":550,"modifier":"EXACT"},"end":{"value":623,"modifier":"EXACT"}},"description":"PAS","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50112"}]},{"type":"Domain","location":{"start":{"value":624,"modifier":"EXACT"},"end":{"value":678,"modifier":"EXACT"}},"description":"PAC","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50113"}]},{"type":"Domain","location":{"start":{"value":751,"modifier":"EXACT"},"end":{"value":1039,"modifier":"EXACT"}},"description":"Protein kinase","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50011"}]},{"type":"Region","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":27,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Region","location":{"start":{"value":66,"modifier":"EXACT"},"end":{"value":98,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Region","location":{"start":{"value":217,"modifier":"EXACT"},"end":{"value":268,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Region","location":{"start":{"value":461,"modifier":"EXACT"},"end":{"value":498,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Region","location":{"start":{"value":912,"modifier":"EXACT"},"end":{"value":932,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":13,"modifier":"EXACT"}},"description":"Polar residues","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":69,"modifier":"EXACT"},"end":{"value":81,"modifier":"EXACT"}},"description":"Basic and acidic residues","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":234,"modifier":"EXACT"},"end":{"value":254,"modifier":"EXACT"}},"description":"Low complexity","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":461,"modifier":"EXACT"},"end":{"value":471,"modifier":"EXACT"}},"description":"Basic and acidic residues","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":481,"modifier":"EXACT"},"end":{"value":493,"modifier":"EXACT"}},"description":"Basic and acidic residues","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Active site","location":{"start":{"value":876,"modifier":"EXACT"},"end":{"value":876,"modifier":"EXACT"}},"description":"Proton acceptor","evidences":[{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10027"}]},{"type":"Binding site","location":{"start":{"value":780,"modifier":"EXACT"},"end":{"value":780,"modifier":"EXACT"}},"description":"","featureCrossReferences":[{"database":"ChEBI","id":"CHEBI:30616"}],"evidences":[{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10141"}],"ligand":{"name":"ATP","id":"ChEBI:CHEBI:30616"}}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022840"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10141"}],"id":"KW-0067","category":"Ligand","name":"ATP-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022991"}],"id":"KW-0157","category":"Ligand","name":"Chromophore"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022630"}],"id":"KW-0285","category":"Ligand","name":"Flavoprotein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022643"}],"id":"KW-0288","category":"Ligand","name":"FMN"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022777"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00159"}],"id":"KW-0418","category":"Molecular function","name":"Kinase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022741"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU10141"}],"id":"KW-0547","category":"Ligand","name":"Nucleotide-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022543"}],"id":"KW-0600","category":"Molecular function","name":"Photoreceptor protein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023170"}],"id":"KW-0675","category":"Molecular function","name":"Receptor"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022737"}],"id":"KW-0677","category":"Domain","name":"Repeat"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022606"}],"id":"KW-0716","category":"Biological process","name":"Sensory transduction"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022527"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00159"}],"id":"KW-0723","category":"Molecular function","name":"Serine/threonine-protein kinase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022679"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00159"}],"id":"KW-0808","category":"Molecular function","name":"Transferase"}],"references":[{"referenceNumber":1,"citation":{"id":"26929367","citationType":"journal article","authors":["Glantz S.T.","Carpenter E.J.","Melkonian M.","Gardner K.H.","Boyden E.S.","Wong G.K.","Chow B.Y."],"citationCrossReferences":[{"database":"PubMed","id":"26929367"},{"database":"DOI","id":"10.1073/pnas.1509428113"}],"title":"Functional and topological diversity of LOV domain photoreceptors.","publicationDate":"2016","journal":"Proc. Natl. Acad. Sci. U.S.A.","firstPage":"E1442","lastPage":"E1451","volume":"113"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76375.1"}],"value":"AREG_2069008","type":"STRAIN"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76375.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KU698190","properties":[{"key":"ProteinId","value":"AML76375.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A126WUT4","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005524","properties":[{"key":"GoTerm","value":"F:ATP binding"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0009882","properties":[{"key":"GoTerm","value":"F:blue light photoreceptor activity"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-ARBA"}]},{"database":"GO","id":"GO:0004674","properties":[{"key":"GoTerm","value":"F:protein serine/threonine kinase activity"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"CDD","id":"cd00130","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"2"}]},{"database":"CDD","id":"cd05574","properties":[{"key":"EntryName","value":"STKc_phototropin_like"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"3.30.200.20:FF:000133","properties":[{"key":"EntryName","value":"LOV domain-containing protein"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"3.30.450.20:FF:000002","properties":[{"key":"EntryName","value":"LOV domain-containing protein"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"1.10.510.10:FF:000265","properties":[{"key":"EntryName","value":"Putative LOV domain-containing protein"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"3.30.450.20:FF:000036","properties":[{"key":"EntryName","value":"Putative LOV domain-containing protein"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.30.450.20","properties":[{"key":"EntryName","value":"PAS domain"},{"key":"MatchStatus","value":"2"}]},{"database":"Gene3D","id":"3.30.200.20","properties":[{"key":"EntryName","value":"Phosphorylase Kinase, domain 1"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.510.10","properties":[{"key":"EntryName","value":"Transferase(Phosphotransferase) domain 1"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR011009","properties":[{"key":"EntryName","value":"Kinase-like_dom_sf"}]},{"database":"InterPro","id":"IPR001610","properties":[{"key":"EntryName","value":"PAC"}]},{"database":"InterPro","id":"IPR000014","properties":[{"key":"EntryName","value":"PAS"}]},{"database":"InterPro","id":"IPR000700","properties":[{"key":"EntryName","value":"PAS-assoc_C"}]},{"database":"InterPro","id":"IPR035965","properties":[{"key":"EntryName","value":"PAS-like_dom_sf"}]},{"database":"InterPro","id":"IPR000719","properties":[{"key":"EntryName","value":"Prot_kinase_dom"}]},{"database":"InterPro","id":"IPR017441","properties":[{"key":"EntryName","value":"Protein_kinase_ATP_BS"}]},{"database":"InterPro","id":"IPR008271","properties":[{"key":"EntryName","value":"Ser/Thr_kinase_AS"}]},{"database":"NCBIfam","id":"TIGR00229","properties":[{"key":"EntryName","value":"sensory_box"},{"key":"MatchStatus","value":"2"}]},{"database":"PANTHER","id":"PTHR45637","properties":[{"key":"EntryName","value":"FLIPPASE KINASE 1-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF13426","properties":[{"key":"EntryName","value":"PAS_9"},{"key":"MatchStatus","value":"2"}]},{"database":"Pfam","id":"PF00069","properties":[{"key":"EntryName","value":"Pkinase"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00086","properties":[{"key":"EntryName","value":"PAC"},{"key":"MatchStatus","value":"2"}]},{"database":"SMART","id":"SM00091","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"2"}]},{"database":"SMART","id":"SM00220","properties":[{"key":"EntryName","value":"S_TKc"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF56112","properties":[{"key":"EntryName","value":"Protein kinase-like (PK-like)"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF55785","properties":[{"key":"EntryName","value":"PYP-like sensor domain (PAS domain)"},{"key":"MatchStatus","value":"2"}]},{"database":"PROSITE","id":"PS50113","properties":[{"key":"EntryName","value":"PAC"},{"key":"MatchStatus","value":"2"}]},{"database":"PROSITE","id":"PS50112","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"2"}]},{"database":"PROSITE","id":"PS00107","properties":[{"key":"EntryName","value":"PROTEIN_KINASE_ATP"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50011","properties":[{"key":"EntryName","value":"PROTEIN_KINASE_DOM"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS00108","properties":[{"key":"EntryName","value":"PROTEIN_KINASE_ST"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MDSSKPQNTSTAIPTVHSLGKSPYEPYTLARDSRGSLEVFNPAGTSASSSAFKVTSNIERPLYDVLQDDGSHSNKRDKANEDSVLSLEHGPCSQSGRLRGPVGKWMALTDTESLNAIKSESAKDVAVNLKEFPLGLAEKSEISYGAPQDSRIEVGNRQAVAVALLKQNGNEKTEKTNLESLGSGLLHGTGSGQIMSESGMAERAAAWGLVVKTDAGTGKPQGVGVRTSEEEVRGQTQRGSGSSMRGSGSSMRTSDGSDRGSETSVQRVSNDLKEALSTLQQTFVVSDATTPDYPIVYASAGFFNMTGYSPKEVIGRNCRFLQGADTDYIEVSKIREAVATGQSYCGRLLNYKKDGKPFWNLLTLTPIKDGNGKVIKYIGMQVEVSKYTEGSKNGALRPNGLPESLIRYDARQKDMAVNCAEEVLQAVKHPGPVQSTTQVTARHSEGGLSPLYLEPIADTKVEKINSDDPSRRTSQTSLRNDISRKSDVHDAGMKQRKSGRLSLMGLTGKTRNLTKNHETKPTIEPEILMTKDEEKIDSFDILERKKELRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYPREEIIGRNCRFLQGPETDRDTVNQIRDAIRDEREITVQLLNYTKSGRKFWNLFHLQPMHDQKGELQYFIGVQLDGSEHVEPLKNRLSENAELESAKLVKATAENVDDAVRELPDANLRPENLWEMHSSVVFPKPHKNNNSSWKAIKKIQEIGEKIGLKHFKSIRPLGSGDTGSVHLVELCNTGELFAMKAMDKAVMLNRNKVHRTCMERQIMGILDHPFLPTLYASFQTKTHVCLITDFAPGGELFMLVDRQPMKVLREDAVRFYAAEVVIALEYLHCQGVVYRDLKPENLLLQSDGHLLLTDFDLSYLASCRPQLIKNTGIPGRKRKTKNEPPPTFVAEPTMASNSFVGTEEYIAPEIITGTGHSSAVDWWALGILLYELLYGHTPFRGKNRQNTFAKILHKDLTFPSSIPASLAARQLINRLLHRDPANRLGSKRGADEIKQHPFFRGIQWALVRCMGPPQLDAPMELIGKDPYMDTKVVDFDWDV","length":1079,"molWeight":119846,"crc64":"0842301FA157FF3E","md5":"18E38F7F95D9DCD6A20F13BAA137C8D9"},"extraAttributes":{"countByCommentType":{"CATALYTIC ACTIVITY":2,"COFACTOR":1,"SIMILARITY":2},"countByFeatureType":{"Domain":5,"Region":5,"Compositional bias":5,"Active site":1,"Binding site":1},"uniParcId":"UPI00078E34E0"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A126WUV4","uniProtkbId":"A0A126WUV4_9CONI","entryAudit":{"firstPublicDate":"2016-05-11","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2016-05-11","entryVersion":32,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76373.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76373.1"}],"value":"Putative LOV domain-containing protein"}}]},"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004906"}],"value":"Protein modification; protein ubiquitination"}],"commentType":"PATHWAY"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004123"}],"value":"Nucleus","id":"SL-0191"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00007833"}],"value":"Belongs to the ADAGIO family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":33,"modifier":"EXACT"},"end":{"value":115,"modifier":"EXACT"}},"description":"PAS","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50112"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023108"}],"id":"KW-0090","category":"Biological process","name":"Biological rhythms"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022991"}],"id":"KW-0157","category":"Ligand","name":"Chromophore"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022630"}],"id":"KW-0285","category":"Ligand","name":"Flavoprotein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022643"}],"id":"KW-0288","category":"Ligand","name":"FMN"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022441"}],"id":"KW-0880","category":"Domain","name":"Kelch repeat"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022543"}],"id":"KW-0600","category":"Molecular function","name":"Photoreceptor protein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023170"}],"id":"KW-0675","category":"Molecular function","name":"Receptor"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022737"}],"id":"KW-0677","category":"Domain","name":"Repeat"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022606"}],"id":"KW-0716","category":"Biological process","name":"Sensory transduction"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022786"}],"id":"KW-0833","category":"Biological process","name":"Ubl conjugation pathway"}],"references":[{"referenceNumber":1,"citation":{"id":"26929367","citationType":"journal article","authors":["Glantz S.T.","Carpenter E.J.","Melkonian M.","Gardner K.H.","Boyden E.S.","Wong G.K.","Chow B.Y."],"citationCrossReferences":[{"database":"PubMed","id":"26929367"},{"database":"DOI","id":"10.1073/pnas.1509428113"}],"title":"Functional and topological diversity of LOV domain photoreceptors.","publicationDate":"2016","journal":"Proc. Natl. Acad. Sci. U.S.A.","firstPage":"E1442","lastPage":"E1451","volume":"113"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76373.1"}],"value":"AREG_2008482","type":"STRAIN"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76373.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KU698188","properties":[{"key":"ProteinId","value":"AML76373.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A126WUV4","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005829","properties":[{"key":"GoTerm","value":"C:cytosol"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0019005","properties":[{"key":"GoTerm","value":"C:SCF ubiquitin ligase complex"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"GO","id":"GO:0007623","properties":[{"key":"GoTerm","value":"P:circadian rhythm"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-ARBA"}]},{"database":"GO","id":"GO:0009637","properties":[{"key":"GoTerm","value":"P:response to blue light"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"GO","id":"GO:0006511","properties":[{"key":"GoTerm","value":"P:ubiquitin-dependent protein catabolic process"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-ARBA"}]},{"database":"CDD","id":"cd22154","properties":[{"key":"EntryName","value":"F-box_AtADO-like"},{"key":"MatchStatus","value":"1"}]},{"database":"CDD","id":"cd00130","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"1.20.1280.50:FF:000021","properties":[{"key":"EntryName","value":"Adagio protein 1"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"3.30.450.20:FF:000041","properties":[{"key":"EntryName","value":"Adagio protein 1"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"2.120.10.80:FF:000005","properties":[{"key":"EntryName","value":"Putative LOV domain-containing protein"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"2.120.10.80:FF:000050","properties":[{"key":"EntryName","value":"Putative LOV domain-containing protein"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.20.1280.50","properties":[{"key":"EntryName","value":"-"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"2.120.10.80","properties":[{"key":"EntryName","value":"Kelch-type beta propeller"},{"key":"MatchStatus","value":"2"}]},{"database":"Gene3D","id":"3.30.450.20","properties":[{"key":"EntryName","value":"PAS domain"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR036047","properties":[{"key":"EntryName","value":"F-box-like_dom_sf"}]},{"database":"InterPro","id":"IPR001810","properties":[{"key":"EntryName","value":"F-box_dom"}]},{"database":"InterPro","id":"IPR011043","properties":[{"key":"EntryName","value":"Gal_Oxase/kelch_b-propeller"}]},{"database":"InterPro","id":"IPR015915","properties":[{"key":"EntryName","value":"Kelch-typ_b-propeller"}]},{"database":"InterPro","id":"IPR011498","properties":[{"key":"EntryName","value":"Kelch_2"}]},{"database":"InterPro","id":"IPR000014","properties":[{"key":"EntryName","value":"PAS"}]},{"database":"InterPro","id":"IPR035965","properties":[{"key":"EntryName","value":"PAS-like_dom_sf"}]},{"database":"NCBIfam","id":"TIGR00229","properties":[{"key":"EntryName","value":"sensory_box"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR46175:SF5","properties":[{"key":"EntryName","value":"ADAGIO PROTEIN 1"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR46175","properties":[{"key":"EntryName","value":"BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF12937","properties":[{"key":"EntryName","value":"F-box-like"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF07646","properties":[{"key":"EntryName","value":"Kelch_2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF24681","properties":[{"key":"EntryName","value":"Kelch_KLHDC2_KLHL20_DRC7"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF13426","properties":[{"key":"EntryName","value":"PAS_9"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF81383","properties":[{"key":"EntryName","value":"F-box domain"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF50965","properties":[{"key":"EntryName","value":"Galactose oxidase, central domain"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF55785","properties":[{"key":"EntryName","value":"PYP-like sensor domain (PAS domain)"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50112","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MEWDSGSDMSMEEEDHMQICEDEGFLMNDGGPVPISMDNLLHSTPCGFAVTDALEPDQPIIYVNAVFEYVTGYKAEEILGRNCRFLQYRGPFAQRRHPLVDSMVVSEIRRCLDEGVEFQGELLNFRKDGTPLMNRLRLTPIHGDDGIVTHIIGIQLFTEANIDLGPMPLPFYKEASTRCVDRSLSDPFLYRPAAIGQGHFCREICGIFQLSDEVLAQKILSRLTPRDVASVGSVCKRLYQLTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRLVLFGGEGVNMQPMNDTFVLDLSATNPEWRHVKVSSPPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFILDLDAQQPTWREVAGSAPPLPRSWHSSCTLDGTKLVVSGGCADSGVLLSDTFLLDLTMEKPIWKEIPVSWTPPSRLGHSLTVYGGRKILMFGGLAKSGPLRLRSSDVYTIDLSEEEPKWRYLTGSGMPGAGNPGGKAPPPRLDHVAVSLPGGRVLIFGGSVAGLHSASQLYLLDPTEEKPTWRMLNVPGQQPRFAWGHSTCVVGGTRALVLGGHTGEEWILNELHELSLASKHGLD","length":621,"molWeight":68242,"crc64":"5FE8313AB7C520B5","md5":"B8AA1637ED486506BD31B10B8D50ABE0"},"extraAttributes":{"countByCommentType":{"PATHWAY":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":1},"uniParcId":"UPI00078CBC07"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A7M1ILG5","uniProtkbId":"A0A7M1ILG5_9CONI","entryAudit":{"firstPublicDate":"2021-04-07","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2021-04-07","entryVersion":19,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51186.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51186.1"}],"value":"Class III HD-Zip protein"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51186.1"}],"value":"C3HDZ_A"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004123"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000682"}],"value":"Nucleus","id":"SL-0191"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00010338"}],"value":"Belongs to the HD-ZIP homeobox family. Class III subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":13,"modifier":"EXACT"},"end":{"value":77,"modifier":"EXACT"}},"description":"Homeobox","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50071"}]},{"type":"Domain","location":{"start":{"value":154,"modifier":"EXACT"},"end":{"value":369,"modifier":"EXACT"}},"description":"START","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50848"}]},{"type":"DNA binding","location":{"start":{"value":15,"modifier":"EXACT"},"end":{"value":78,"modifier":"EXACT"}},"description":"Homeobox","evidences":[{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}]},{"type":"Region","location":{"start":{"value":134,"modifier":"EXACT"},"end":{"value":158,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Coiled coil","location":{"start":{"value":87,"modifier":"EXACT"},"end":{"value":114,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023054"},{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}],"id":"KW-0175","category":"Domain","name":"Coiled coil"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023125"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}],"id":"KW-0238","category":"Molecular function","name":"DNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023155"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}],"id":"KW-0371","category":"Domain","name":"Homeobox"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023163"}],"id":"KW-0804","category":"Biological process","name":"Transcription"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023015"}],"id":"KW-0805","category":"Biological process","name":"Transcription regulation"}],"references":[{"referenceNumber":1,"citation":{"id":"33028198","citationType":"journal article","authors":["Du H.","Ran J.H.","Feng Y.Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"33028198"}],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"2020","journal":"BMC Evol. Biol.","firstPage":"0","lastPage":"131","volume":"20"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51186.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT557834","properties":[{"key":"ProteinId","value":"QOQ51186.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A7M1ILG5","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0003677","properties":[{"key":"GoTerm","value":"F:DNA binding"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0003700","properties":[{"key":"GoTerm","value":"F:DNA-binding transcription factor activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008289","properties":[{"key":"GoTerm","value":"F:lipid binding"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0010014","properties":[{"key":"GoTerm","value":"P:meristem initiation"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-ARBA"}]},{"database":"CDD","id":"cd14686","properties":[{"key":"EntryName","value":"bZIP"},{"key":"MatchStatus","value":"1"}]},{"database":"CDD","id":"cd00086","properties":[{"key":"EntryName","value":"homeodomain"},{"key":"MatchStatus","value":"1"}]},{"database":"CDD","id":"cd08875","properties":[{"key":"EntryName","value":"START_ArGLABRA2_like"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"1.10.10.60:FF:000197","properties":[{"key":"EntryName","value":"Homeobox-leucine zipper protein REVOLUTA"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.30.530.20","properties":[{"key":"EntryName","value":"-"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.10.60","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR001356","properties":[{"key":"EntryName","value":"HD"}]},{"database":"InterPro","id":"IPR044830","properties":[{"key":"EntryName","value":"HD-Zip_III"}]},{"database":"InterPro","id":"IPR009057","properties":[{"key":"EntryName","value":"Homeodomain-like_sf"}]},{"database":"InterPro","id":"IPR013978","properties":[{"key":"EntryName","value":"MEKHLA"}]},{"database":"InterPro","id":"IPR023393","properties":[{"key":"EntryName","value":"START-like_dom_sf"}]},{"database":"InterPro","id":"IPR002913","properties":[{"key":"EntryName","value":"START_lipid-bd_dom"}]},{"database":"PANTHER","id":"PTHR45950","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR45950:SF7","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00046","properties":[{"key":"EntryName","value":"Homeodomain"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF08670","properties":[{"key":"EntryName","value":"MEKHLA"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01852","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00389","properties":[{"key":"EntryName","value":"HOX"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00234","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF55961","properties":[{"key":"EntryName","value":"Bet v1-like"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF46689","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50071","properties":[{"key":"EntryName","value":"HOMEOBOX_2"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50848","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MAVMANNKDAKNSMDTSKYVRYTSEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYMRQQLQNASVAATDTSCESVVTSGQHQHNPTPQHPPRDASPAGLLSIAEETLAEFLSKAKGAAVDWVQMPGMKPGPDSIGIVAISNTCNGVAARACGLVGLDPTKVAEILKDRPSWLRDCRCLDVLTAFPTGNGGTIELLYMQTYAATTLASARDFWTLRYTTVLEDGSLVVCERSLSGTQGGPSIPPVQHFVRAEMLPSGYLIQPCEGGGSIIRIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTIAALRRLRQIAQEATGEVVFGWGRQPAVLRTFSQRLSRGFNEAVNGFTDDGWSLMGSDGVEDVTIAINSSPNKHFGSQVNASNGLTTLGGGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAAALKASPYSVPGSRAGGFSGSQVILPLAHTVEHEEFLEVIKLEGHGLTQEEAVLSRDMFLLQLCSGIDENAAGACAELVFAPIDESFADDAPLLPSGFRVIPLESRTDGSGGPNRTLDLASALEVGSAGTRTSGDSGANSNLRSVLTIAFQFTYESHLRENVAVMARQYVRSVVASVQRVAMALAPSRLSPHVGPRPPPGTPEALTLARWICQSYRLHIGVDLFRADCEASESVLKLLWHHSDAIMCCSVKSLPVFTFANQAGLDMLETTLVALQDISLDKILDENGRKSFFTDYGQIIQQGYAYLPAGICLSSMGRPASYDRAIAWKVLNDEDSTHCIVFMFMNWSFM","length":842,"molWeight":92115,"crc64":"2385BF34A119F16A","md5":"3B83043C7759FDB2887A29BA9ECD02A7"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2,"DNA binding":1,"Region":1,"Coiled coil":1},"uniParcId":"UPI0018A5F3CF"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A7M1ILK2","uniProtkbId":"A0A7M1ILK2_9CONI","entryAudit":{"firstPublicDate":"2021-04-07","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2021-04-07","entryVersion":19,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51221.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51221.1"}],"value":"Class III HD-Zip protein"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51221.1"}],"value":"C3HDZ_D"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004123"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU000682"}],"value":"Nucleus","id":"SL-0191"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00010338"}],"value":"Belongs to the HD-ZIP homeobox family. Class III subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":15,"modifier":"EXACT"},"end":{"value":79,"modifier":"EXACT"}},"description":"Homeobox","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50071"}]},{"type":"Domain","location":{"start":{"value":158,"modifier":"EXACT"},"end":{"value":386,"modifier":"EXACT"}},"description":"START","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50848"}]},{"type":"DNA binding","location":{"start":{"value":17,"modifier":"EXACT"},"end":{"value":80,"modifier":"EXACT"}},"description":"Homeobox","evidences":[{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}]},{"type":"Region","location":{"start":{"value":143,"modifier":"EXACT"},"end":{"value":162,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Coiled coil","location":{"start":{"value":75,"modifier":"EXACT"},"end":{"value":116,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023054"},{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}],"id":"KW-0175","category":"Domain","name":"Coiled coil"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023125"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}],"id":"KW-0238","category":"Molecular function","name":"DNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023155"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}],"id":"KW-0371","category":"Domain","name":"Homeobox"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00108"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023163"}],"id":"KW-0804","category":"Biological process","name":"Transcription"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023015"}],"id":"KW-0805","category":"Biological process","name":"Transcription regulation"}],"references":[{"referenceNumber":1,"citation":{"id":"33028198","citationType":"journal article","authors":["Du H.","Ran J.H.","Feng Y.Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"33028198"}],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"2020","journal":"BMC Evol. Biol.","firstPage":"0","lastPage":"131","volume":"20"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51221.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT557843","properties":[{"key":"ProteinId","value":"QOQ51221.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A7M1ILK2","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0003677","properties":[{"key":"GoTerm","value":"F:DNA binding"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0003700","properties":[{"key":"GoTerm","value":"F:DNA-binding transcription factor activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008289","properties":[{"key":"GoTerm","value":"F:lipid binding"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0010014","properties":[{"key":"GoTerm","value":"P:meristem initiation"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-ARBA"}]},{"database":"CDD","id":"cd14686","properties":[{"key":"EntryName","value":"bZIP"},{"key":"MatchStatus","value":"1"}]},{"database":"CDD","id":"cd00086","properties":[{"key":"EntryName","value":"homeodomain"},{"key":"MatchStatus","value":"1"}]},{"database":"CDD","id":"cd08875","properties":[{"key":"EntryName","value":"START_ArGLABRA2_like"},{"key":"MatchStatus","value":"1"}]},{"database":"FunFam","id":"1.10.10.60:FF:000197","properties":[{"key":"EntryName","value":"Homeobox-leucine zipper protein REVOLUTA"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"3.30.530.20","properties":[{"key":"EntryName","value":"-"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.10.60","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR001356","properties":[{"key":"EntryName","value":"HD"}]},{"database":"InterPro","id":"IPR044830","properties":[{"key":"EntryName","value":"HD-Zip_III"}]},{"database":"InterPro","id":"IPR009057","properties":[{"key":"EntryName","value":"Homeodomain-like_sf"}]},{"database":"InterPro","id":"IPR013978","properties":[{"key":"EntryName","value":"MEKHLA"}]},{"database":"InterPro","id":"IPR023393","properties":[{"key":"EntryName","value":"START-like_dom_sf"}]},{"database":"InterPro","id":"IPR002913","properties":[{"key":"EntryName","value":"START_lipid-bd_dom"}]},{"database":"PANTHER","id":"PTHR45950","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR45950:SF1","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-15"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00046","properties":[{"key":"EntryName","value":"Homeodomain"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF08670","properties":[{"key":"EntryName","value":"MEKHLA"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01852","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00389","properties":[{"key":"EntryName","value":"HOX"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00234","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF55961","properties":[{"key":"EntryName","value":"Bet v1-like"},{"key":"MatchStatus","value":"2"}]},{"database":"SUPFAM","id":"SSF46689","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50071","properties":[{"key":"EntryName","value":"HOMEOBOX_2"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50848","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MAVTSGKEGKSSTSAMDQGKYVRYTAEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLSAMNKLLMEENDRLQKQVSQLVYENGYFRQQLQNASIATTDTSCESVVTSVKHQQQNHLTPRDPPRDTSPAGLLSIAEETLTEFLSKAKGNAVEWIQMPGMKPGPDAIGIVTISHGCTGVAARACSLVSIEPTKVAEILKDRTSWLRDCRSVDVLTAFSTGNGGTIELLYMQMYAPTTLASARDFWTLRYTSVLEDGSLVVCERSLSGTQGGPSMPAVQHFVRAEMQPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKVTMAALRHLRQIAQEVSSDVVLGWGRQPAALRTFSQRLCKGFNEAVNGFADDGWSLMGNDGMDDVTILFNSSPSKLLGPQFASSDGLPALGGGILCAKASMLLQNVPPALLVRFLREHRSEWADSNIDAYSAASWKSSPCTVPTSRIGGFGSGQVILPLAHTVEHEEFLEVIKLENNGLTQEEALLSRDMFLLQLCSGIDENAVGACAELVFAPIDASLADSSPLLPSGFRVIPLDSGIDGSSPNRTLDLASALEIGSAGTRSSVDYCGNSSNLRSVLTIAFQFTFENHLRENVASMARQYVRGVVASVQRVAMALAPSRLGSHLGPRLPPGTPEALTLARWVCQSYRFHLGVELLRPNSEVNESVLKTLWHHSDAIMCCSLKSLPVFTFANQAGLDMLETTLVALQDISLEKILDDNGRKSFCSDIAQIMQQGYAYLPAGVCVSSMGRPASYDRAIAWKVLNEEENAHCIAFMFMNWSFV","length":846,"molWeight":92746,"crc64":"2F4AE6E3C183C68C","md5":"A55ED728EFC81E61FCE2508246B434D8"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2,"DNA binding":1,"Region":1,"Coiled coil":1},"uniParcId":"UPI0018A653CB"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A7M3VDW4","uniProtkbId":"A0A7M3VDW4_9CONI","entryAudit":{"firstPublicDate":"2021-04-07","lastAnnotationUpdateDate":"2026-11-04","lastSequenceUpdateDate":"2021-04-07","entryVersion":16,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51778.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51778.1"}],"value":"Asymmetric leaves 1"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51778.1"}],"value":"AS1"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004123"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"value":"Nucleus","id":"SL-0191"}}]}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":57,"modifier":"EXACT"}},"description":"HTH myb-type","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS51294"}]},{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":53,"modifier":"EXACT"}},"description":"Myb-like","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50090"}]},{"type":"Domain","location":{"start":{"value":54,"modifier":"EXACT"},"end":{"value":104,"modifier":"EXACT"}},"description":"Myb-like","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50090"}]},{"type":"Domain","location":{"start":{"value":58,"modifier":"EXACT"},"end":{"value":108,"modifier":"EXACT"}},"description":"HTH myb-type","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS51294"}]},{"type":"Region","location":{"start":{"value":312,"modifier":"EXACT"},"end":{"value":340,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Coiled coil","location":{"start":{"value":430,"modifier":"EXACT"},"end":{"value":469,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}]},{"type":"Compositional bias","location":{"start":{"value":316,"modifier":"EXACT"},"end":{"value":340,"modifier":"EXACT"}},"description":"Low complexity","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}],"id":"KW-0175","category":"Domain","name":"Coiled coil"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023125"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0238","category":"Molecular function","name":"DNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022737"}],"id":"KW-0677","category":"Domain","name":"Repeat"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023163"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0804","category":"Biological process","name":"Transcription"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023015"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0805","category":"Biological process","name":"Transcription regulation"}],"references":[{"referenceNumber":1,"citation":{"id":"33028198","citationType":"journal article","authors":["Du H.","Ran J.H.","Feng Y.Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"33028198"}],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"2020","journal":"BMC Evol. Biol.","firstPage":"0","lastPage":"131","volume":"20"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51778.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT540580","properties":[{"key":"ProteinId","value":"QOQ51778.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A7M3VDW4","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0003677","properties":[{"key":"GoTerm","value":"F:DNA binding"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0006351","properties":[{"key":"GoTerm","value":"P:DNA-templated transcription"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0006355","properties":[{"key":"GoTerm","value":"P:regulation of DNA-templated transcription"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"CDD","id":"cd00167","properties":[{"key":"EntryName","value":"SANT"},{"key":"MatchStatus","value":"2"}]},{"database":"FunFam","id":"1.10.10.60:FF:000449","properties":[{"key":"EntryName","value":"MYB-related transcription factor"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.10.60","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"2"}]},{"database":"InterPro","id":"IPR009057","properties":[{"key":"EntryName","value":"Homeodomain-like_sf"}]},{"database":"InterPro","id":"IPR052844","properties":[{"key":"EntryName","value":"Leaf_Dev_Regulator"}]},{"database":"InterPro","id":"IPR017930","properties":[{"key":"EntryName","value":"Myb_dom"}]},{"database":"InterPro","id":"IPR001005","properties":[{"key":"EntryName","value":"SANT/Myb"}]},{"database":"PANTHER","id":"PTHR47214","properties":[{"key":"EntryName","value":"PROTEIN ROUGH SHEATH 2 HOMOLOG"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR47214:SF1","properties":[{"key":"EntryName","value":"PROTEIN ROUGH SHEATH 2 HOMOLOG"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF13921","properties":[{"key":"EntryName","value":"Myb_DNA-bind_6"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00717","properties":[{"key":"EntryName","value":"SANT"},{"key":"MatchStatus","value":"2"}]},{"database":"SUPFAM","id":"SSF46689","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS51294","properties":[{"key":"EntryName","value":"HTH_MYB"},{"key":"MatchStatus","value":"2"}]},{"database":"PROSITE","id":"PS50090","properties":[{"key":"EntryName","value":"MYB_LIKE"},{"key":"MatchStatus","value":"2"}]}],"sequence":{"value":"MKERQRWQPEEDALLRAYVKQYGPREWNLVSQRMGKTLDRDAKSCLERWKNYLKPGIKKGSLTEEEQSLVISLQAKYGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQLKERRKERQNLDTANSREGGKYDHILETFAEKYVQKKICPTSLPPFLMPCPSPSPILTLSVPTGSTYADNICLANVKTTPVSTSPIVSQIPNLPESMGLTLPVTKGKVPSAREAEPRLTLESLGSTRSMLEPELALQCSASAMDLELTPPHLGTSSSAVDAASSLPPWMSNVPTAQVPASGGSDIKTTVSAFILEKDTPFPSKSIHLNSSPSVSLSLSPSSSDPVVSSGSASPASEVIAPRSWLQDTMRHQEIINGVAGGVAKEKKINFPWCALEKQVGTSSFDPNLASSKQAMDNLIMQQLPTFLQYGKDLEEGRQSWFMHKKEANWRLSRLEQQLESEKARKRREKIEEVGAKIRALREEEIAYLDKLETESREQLSSLQRDAEMKEAKMMELWAAKHLQLTKFVEQMLYQFPDAQRLFSKDMH","length":533,"molWeight":59859,"crc64":"BAA6211D255D5B2D","md5":"CEE5887C2044409C0BBB57B7B48E1A98"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1},"countByFeatureType":{"Domain":4,"Region":1,"Coiled coil":1,"Compositional bias":1},"uniParcId":"UPI0018A51FD1"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A8E4LYS0","uniProtkbId":"A0A8E4LYS0_9CONI","entryAudit":{"firstPublicDate":"2022-01-19","lastAnnotationUpdateDate":"2026-11-04","lastSequenceUpdateDate":"2022-01-19","entryVersion":16,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51795.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51795.1"}],"value":"Asymmetric leaves 1"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51795.1"}],"value":"AS1"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004123"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"value":"Nucleus","id":"SL-0191"}}]}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":57,"modifier":"EXACT"}},"description":"HTH myb-type","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS51294"}]},{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":53,"modifier":"EXACT"}},"description":"Myb-like","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50090"}]},{"type":"Domain","location":{"start":{"value":54,"modifier":"EXACT"},"end":{"value":104,"modifier":"EXACT"}},"description":"Myb-like","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50090"}]},{"type":"Domain","location":{"start":{"value":58,"modifier":"EXACT"},"end":{"value":108,"modifier":"EXACT"}},"description":"HTH myb-type","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS51294"}]},{"type":"Region","location":{"start":{"value":216,"modifier":"EXACT"},"end":{"value":314,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Coiled coil","location":{"start":{"value":345,"modifier":"EXACT"},"end":{"value":391,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}]},{"type":"Compositional bias","location":{"start":{"value":227,"modifier":"EXACT"},"end":{"value":257,"modifier":"EXACT"}},"description":"Low complexity","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":258,"modifier":"EXACT"},"end":{"value":282,"modifier":"EXACT"}},"description":"Polar residues","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"Coils"}],"id":"KW-0175","category":"Domain","name":"Coiled coil"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023125"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0238","category":"Molecular function","name":"DNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022737"}],"id":"KW-0677","category":"Domain","name":"Repeat"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023163"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0804","category":"Biological process","name":"Transcription"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023015"},{"evidenceCode":"ECO:0000256","source":"PROSITE-ProRule","id":"PRU00625"}],"id":"KW-0805","category":"Biological process","name":"Transcription regulation"}],"references":[{"referenceNumber":1,"citation":{"id":"CI-EKCEPAUNFTLQ0","citationType":"submission","authors":["Du H."],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"MAY-2020","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51795.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT540595","properties":[{"key":"ProteinId","value":"QOQ51795.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A8E4LYS0","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0003677","properties":[{"key":"GoTerm","value":"F:DNA binding"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0006351","properties":[{"key":"GoTerm","value":"P:DNA-templated transcription"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"GO","id":"GO:0006355","properties":[{"key":"GoTerm","value":"P:regulation of DNA-templated transcription"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"CDD","id":"cd00167","properties":[{"key":"EntryName","value":"SANT"},{"key":"MatchStatus","value":"2"}]},{"database":"FunFam","id":"1.10.10.60:FF:000449","properties":[{"key":"EntryName","value":"MYB-related transcription factor"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.10.60","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"2"}]},{"database":"InterPro","id":"IPR009057","properties":[{"key":"EntryName","value":"Homeodomain-like_sf"}]},{"database":"InterPro","id":"IPR052844","properties":[{"key":"EntryName","value":"Leaf_Dev_Regulator"}]},{"database":"InterPro","id":"IPR017930","properties":[{"key":"EntryName","value":"Myb_dom"}]},{"database":"InterPro","id":"IPR001005","properties":[{"key":"EntryName","value":"SANT/Myb"}]},{"database":"PANTHER","id":"PTHR47214","properties":[{"key":"EntryName","value":"PROTEIN ROUGH SHEATH 2 HOMOLOG"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR47214:SF1","properties":[{"key":"EntryName","value":"PROTEIN ROUGH SHEATH 2 HOMOLOG"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF13921","properties":[{"key":"EntryName","value":"Myb_DNA-bind_6"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00717","properties":[{"key":"EntryName","value":"SANT"},{"key":"MatchStatus","value":"2"}]},{"database":"SUPFAM","id":"SSF46689","properties":[{"key":"EntryName","value":"Homeodomain-like"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS51294","properties":[{"key":"EntryName","value":"HTH_MYB"},{"key":"MatchStatus","value":"2"}]},{"database":"PROSITE","id":"PS50090","properties":[{"key":"EntryName","value":"MYB_LIKE"},{"key":"MatchStatus","value":"2"}]}],"sequence":{"value":"MKERQRWRSEEDSLLHAYVKQYGPREWNLVSQRMNKALDRDPKSCAERWKNYLKPGIKKGSLSEDEQRLVISLQAKYGNRWKKIAAQVPGTTAKRLSKWWEVYREKQHKIKDRKERTVADSAITIEEGKYDHILETFAEKYMQRQKQLATPGSCNLPTIAAMPSGIPLPITFSMPTTSTPDFIHFAIPSASTPTTCSFGAPTPCIPPWMSNKPNSTHGPVTEAFLHSSPLSKSSPSSSSSPSVTLSLSPSSSTPVMSANTASACSSWMQDTAKQSSENNVSADSEAAKEKNRGNSHVEMPSMDPNKSASGHQDTADQGVIMQEIPVFFQHCRELEERQLSWSIHKKETAWRLKRLEQQFEAEKARKRREKMEEIESKVRALREEESLYLDRLESDYREQLSRIHRDAEIKDTRMMEMWTAKHVQLEKFFEQIVHRHDPHKSI","length":442,"molWeight":50660,"crc64":"19DCDDB52E9E2DC8","md5":"0915F937BF728C5342FE3F910766D661"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1},"countByFeatureType":{"Domain":4,"Region":1,"Coiled coil":1,"Compositional bias":2},"uniParcId":"UPI001C32BEC3"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"Q9MV50","uniProtkbId":"Q9MV50_9CONI","entryAudit":{"firstPublicDate":"2000-10-01","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2000-10-01","entryVersion":79,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF69192.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Maturase K"}},"alternativeNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Intron maturase"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF69192.1"}],"value":"matK"}}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"value":"Usually encoded in the trnK tRNA gene intron. Probably assists in splicing its own and other chloroplast group II introns"}],"commentType":"FUNCTION"},{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Plastid, chloroplast","id":"SL-0049"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006621"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"value":"Belongs to the intron maturase 2 family. MatK subfamily"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":331,"modifier":"EXACT"}},"description":"Maturase MatK N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01824"}]},{"type":"Domain","location":{"start":{"value":361,"modifier":"EXACT"},"end":{"value":466,"modifier":"EXACT"}},"description":"Domain X","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01348"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF69192.1"}],"geneEncodingType":"Chloroplast"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF69192.1"}],"id":"KW-0150","category":"Cellular component","name":"Chloroplast"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022664"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0507","category":"Biological process","name":"mRNA processing"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022640"},{"evidenceCode":"ECO:0000256","source":"RuleBase","id":"RU004226"}],"id":"KW-0934","category":"Cellular component","name":"Plastid"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022884"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0694","category":"Molecular function","name":"RNA-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022694"},{"evidenceCode":"ECO:0000256","source":"HAMAP-Rule","id":"MF_01390"}],"id":"KW-0819","category":"Biological process","name":"tRNA processing"}],"references":[{"referenceNumber":1,"citation":{"id":"10779538","citationType":"journal article","authors":["Wang X.Q.","Tank D.C.","Sang T."],"citationCrossReferences":[{"database":"PubMed","id":"10779538"}],"title":"Phylogeny and divergence times in Pinaceae: evidence from three genomes.","publicationDate":"2000","journal":"Mol. Biol. Evol.","firstPage":"773","lastPage":"781","volume":"17"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF69192.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"AF143437","properties":[{"key":"ProteinId","value":"AAF69192.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"Q9MV50","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0009507","properties":[{"key":"GoTerm","value":"C:chloroplast"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0006397","properties":[{"key":"GoTerm","value":"P:mRNA processing"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008380","properties":[{"key":"GoTerm","value":"P:RNA splicing"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-UniRule"}]},{"database":"HAMAP","id":"MF_01390","properties":[{"key":"EntryName","value":"MatK"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR024937","properties":[{"key":"EntryName","value":"Domain_X"}]},{"database":"InterPro","id":"IPR002866","properties":[{"key":"EntryName","value":"Maturase_MatK"}]},{"database":"InterPro","id":"IPR024942","properties":[{"key":"EntryName","value":"Maturase_MatK_N"}]},{"database":"PANTHER","id":"PTHR34811","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR34811:SF1","properties":[{"key":"EntryName","value":"MATURASE K"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01348","properties":[{"key":"EntryName","value":"Intron_maturas2"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01824","properties":[{"key":"EntryName","value":"MatK_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MDEFHRYEKEDSSWQQCFLYPLFFQEDLYAISHDHYLDVSSSSEPMEHLSSNDQFSFLTVKRLIGQIRQQNHSIFSFVNCDPNPLVDRNKSSYSESVLEGLTLVLEVPFSIRSKYSVEGMNEWKSFRSIHSIFPFLEDKFPHSNYILDKRIPYSIHPEILVRTFRRWIRDAPSLHPLRSVLYKYRNSPENNLQRSIIIVPRVNTRFLLFLWNHYVYECESILVPLLKRSFHPRSSSHGSFPERTHFHRKVKHIIRIFRRNSLKSIWSLKDPKIHYVRYGERPIIAIRGTHLLVKKCRYHLPIFRQCYFHLWSEPYRVCSHQLSKNCSSSLGYSLRVRMKPLLVRTKMLDELLITDLITDEFDPIVPIVPIIGLLAREKFCDISGRPISKLSWTSLTDDNILDRFDRIWRNLFHYYSGSFGRDGLYRIKYILSLSCAKTLACKHKSTIRVVRKELGPELFKKSFSKERELDYPAFSSKAAAHSQRERIWHSDIPQINPLANSWQKIQDLKIERKLI","length":515,"molWeight":61200,"crc64":"F88BBDE548211345","md5":"97D75EB30E8A196EDC037F38A40308B4"},"extraAttributes":{"countByCommentType":{"FUNCTION":1,"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2},"uniParcId":"UPI000009712A"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A126WVZ3","uniProtkbId":"A0A126WVZ3_9CONI","entryAudit":{"firstPublicDate":"2016-05-11","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2016-05-11","entryVersion":27,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76374.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76374.1"}],"value":"Putative LOV domain-containing protein"}}]},"features":[{"type":"Domain","location":{"start":{"value":57,"modifier":"EXACT"},"end":{"value":103,"modifier":"EXACT"}},"description":"PAS","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50112"}]},{"type":"Domain","location":{"start":{"value":268,"modifier":"EXACT"},"end":{"value":317,"modifier":"EXACT"}},"description":"PAS","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50112"}]},{"type":"Domain","location":{"start":{"value":342,"modifier":"EXACT"},"end":{"value":396,"modifier":"EXACT"}},"description":"PAC","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50113"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022991"}],"id":"KW-0157","category":"Ligand","name":"Chromophore"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022630"}],"id":"KW-0285","category":"Ligand","name":"Flavoprotein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022643"}],"id":"KW-0288","category":"Ligand","name":"FMN"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022543"}],"id":"KW-0600","category":"Molecular function","name":"Photoreceptor protein"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023170"}],"id":"KW-0675","category":"Molecular function","name":"Receptor"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022606"}],"id":"KW-0716","category":"Biological process","name":"Sensory transduction"}],"references":[{"referenceNumber":1,"citation":{"id":"26929367","citationType":"journal article","authors":["Glantz S.T.","Carpenter E.J.","Melkonian M.","Gardner K.H.","Boyden E.S.","Wong G.K.","Chow B.Y."],"citationCrossReferences":[{"database":"PubMed","id":"26929367"},{"database":"DOI","id":"10.1073/pnas.1509428113"}],"title":"Functional and topological diversity of LOV domain photoreceptors.","publicationDate":"2016","journal":"Proc. Natl. Acad. Sci. U.S.A.","firstPage":"E1442","lastPage":"E1451","volume":"113"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"referenceComments":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76374.1"}],"value":"AREG_2012283","type":"STRAIN"}],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AML76374.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"KU698189","properties":[{"key":"ProteinId","value":"AML76374.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A126WVZ3","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"GO","id":"GO:0009637","properties":[{"key":"GoTerm","value":"P:response to blue light"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-ARBA"}]},{"database":"CDD","id":"cd00130","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"2"}]},{"database":"Gene3D","id":"3.30.450.20","properties":[{"key":"EntryName","value":"PAS domain"},{"key":"MatchStatus","value":"2"}]},{"database":"InterPro","id":"IPR001610","properties":[{"key":"EntryName","value":"PAC"}]},{"database":"InterPro","id":"IPR000014","properties":[{"key":"EntryName","value":"PAS"}]},{"database":"InterPro","id":"IPR000700","properties":[{"key":"EntryName","value":"PAS-assoc_C"}]},{"database":"InterPro","id":"IPR035965","properties":[{"key":"EntryName","value":"PAS-like_dom_sf"}]},{"database":"NCBIfam","id":"TIGR00229","properties":[{"key":"EntryName","value":"sensory_box"},{"key":"MatchStatus","value":"2"}]},{"database":"PANTHER","id":"PTHR47429","properties":[{"key":"EntryName","value":"PROTEIN TWIN LOV 1"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR47429:SF2","properties":[{"key":"EntryName","value":"PROTEIN TWIN LOV 1"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF13426","properties":[{"key":"EntryName","value":"PAS_9"},{"key":"MatchStatus","value":"2"}]},{"database":"SMART","id":"SM00086","properties":[{"key":"EntryName","value":"PAC"},{"key":"MatchStatus","value":"2"}]},{"database":"SMART","id":"SM00091","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"2"}]},{"database":"SUPFAM","id":"SSF55785","properties":[{"key":"EntryName","value":"PYP-like sensor domain (PAS domain)"},{"key":"MatchStatus","value":"2"}]},{"database":"PROSITE","id":"PS50113","properties":[{"key":"EntryName","value":"PAC"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50112","properties":[{"key":"EntryName","value":"PAS"},{"key":"MatchStatus","value":"2"}]}],"sequence":{"value":"MGLERPVKESKMCTQLNSRQLIEESLNRYYSDDIREALGRFPFNFVITDPCLLDHPIVYASQGFLKMSGYSTEEVVGRNGRFLQGPDTDRRTILKIREAISEEKSCQVSILNYTKNGTAFWNLFHLAPVFSEGDGRVIHFVGVQTPISKFSRSSVTNNVSCSRPNNCPAFVENRLLNHHTSSVIYFGSCRREFSVDLSHSGLYNSLAEEDNAGLEEEPACEAKESDKQKAIDAGNRILFELTQFSKHTGKTVLDKRSNSADLVRVAPISSSLSIALNRIHQSFVLADPHLLDMPIVHASNLFLQLTGYSRDEILGRNCRLLQGQDTDQAAIAQIRQSIVAEQCCTVRILNYRKDNSSFWNLLHTAPVRNASGKVAFYVGVQLDVTGIDEDEHQDKGMTPHMKQLGAVGAVRVAVRSLHGLGSSR","length":424,"molWeight":47279,"crc64":"A3B4B7B48CE90497","md5":"486EFCBC4133F892D5BA03D950F1D942"},"extraAttributes":{"countByFeatureType":{"Domain":3},"uniParcId":"UPI00078C326C"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A7M1IL83","uniProtkbId":"A0A7M1IL83_9CONI","entryAudit":{"firstPublicDate":"2021-04-07","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2021-04-07","entryVersion":17,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51160.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51160.1"}],"value":"YABBY transcription factor"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51160.1"}],"value":"YAB_B"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004123"}],"value":"Nucleus","id":"SL-0191"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00010325"}],"value":"Belongs to the YABBY family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":11,"modifier":"EXACT"},"end":{"value":61,"modifier":"EXACT"}},"description":"YABBY N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF24868"}]},{"type":"Domain","location":{"start":{"value":115,"modifier":"EXACT"},"end":{"value":159,"modifier":"EXACT"}},"description":"YABBY protein C-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF04690"}]},{"type":"Region","location":{"start":{"value":69,"modifier":"EXACT"},"end":{"value":90,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":69,"modifier":"EXACT"},"end":{"value":83,"modifier":"EXACT"}},"description":"Low complexity","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022723"}],"id":"KW-0479","category":"Ligand","name":"Metal-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022833"}],"id":"KW-0862","category":"Ligand","name":"Zinc"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022771"}],"id":"KW-0863","category":"Domain","name":"Zinc-finger"}],"references":[{"referenceNumber":1,"citation":{"id":"33028198","citationType":"journal article","authors":["Du H.","Ran J.H.","Feng Y.Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"33028198"}],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"2020","journal":"BMC Evol. Biol.","firstPage":"0","lastPage":"131","volume":"20"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51160.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT557809","properties":[{"key":"ProteinId","value":"QOQ51160.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A7M1IL83","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0010158","properties":[{"key":"GoTerm","value":"P:abaxial cell fate specification"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"CDD","id":"cd00084","properties":[{"key":"EntryName","value":"HMG-box_SF"},{"key":"MatchStatus","value":"1"}]},{"database":"Gene3D","id":"1.10.30.10","properties":[{"key":"EntryName","value":"High mobility group box domain"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR036910","properties":[{"key":"EntryName","value":"HMG_box_dom_sf"}]},{"database":"InterPro","id":"IPR006780","properties":[{"key":"EntryName","value":"YABBY"}]},{"database":"InterPro","id":"IPR056775","properties":[{"key":"EntryName","value":"YABBY_C"}]},{"database":"InterPro","id":"IPR056776","properties":[{"key":"EntryName","value":"YABBY_N"}]},{"database":"PANTHER","id":"PTHR31675:SF30","properties":[{"key":"EntryName","value":"AXIAL REGULATOR YABBY 2-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR31675","properties":[{"key":"EntryName","value":"PROTEIN YABBY 6-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF04690","properties":[{"key":"EntryName","value":"YABBY"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF24868","properties":[{"key":"EntryName","value":"YABBY_N"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF47095","properties":[{"key":"EntryName","value":"HMG-box"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MSSCIDLGFGAEHLCYIQCNYCSTVLAVNVPGSSLLEVVPVRCGHCTSLLSVNMGGLFQPSTPQNCNPSCSSHENKSASSSSSKSREDSVVSCALGAEPETMKPISTGLTDCGSTEKRQRAPSAYNRFIRAEIQRIKAVNPDISHREAFSAAAKNWAHLGLMLPDNNKRTNANADQV","length":177,"molWeight":18950,"crc64":"149424DD402612EF","md5":"73206C85825B8943C839089034A9EF57"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2,"Region":1,"Compositional bias":1},"uniParcId":"UPI0018A50E1B"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A7M1ILG2","uniProtkbId":"A0A7M1ILG2_9CONI","entryAudit":{"firstPublicDate":"2021-04-07","lastAnnotationUpdateDate":"2025-10-08","lastSequenceUpdateDate":"2021-04-07","entryVersion":18,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51201.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51201.1"}],"value":"Class III HD-Zip protein"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51201.1"}],"value":"C3HDZ_B"}}],"features":[{"type":"Domain","location":{"start":{"value":2,"modifier":"EXACT"},"end":{"value":46,"modifier":"EXACT"}},"description":"START","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF01852"}]},{"type":"Domain","location":{"start":{"value":373,"modifier":"EXACT"},"end":{"value":515,"modifier":"EXACT"}},"description":"MEKHLA","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF08670"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51201.1"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"}],"references":[{"referenceNumber":1,"citation":{"id":"33028198","citationType":"journal article","authors":["Du H.","Ran J.H.","Feng Y.Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"33028198"}],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"2020","journal":"BMC Evol. Biol.","firstPage":"0","lastPage":"131","volume":"20"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51201.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT557851","properties":[{"key":"ProteinId","value":"QOQ51201.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A7M1ILG2","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0003700","properties":[{"key":"GoTerm","value":"F:DNA-binding transcription factor activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008289","properties":[{"key":"GoTerm","value":"F:lipid binding"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"InterPro","id":"IPR044830","properties":[{"key":"EntryName","value":"HD-Zip_III"}]},{"database":"InterPro","id":"IPR013978","properties":[{"key":"EntryName","value":"MEKHLA"}]},{"database":"InterPro","id":"IPR002913","properties":[{"key":"EntryName","value":"START_lipid-bd_dom"}]},{"database":"PANTHER","id":"PTHR45950","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR45950:SF7","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF08670","properties":[{"key":"EntryName","value":"MEKHLA"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01852","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"GGGCIVQIVDHMDLEPWSVPEVIRPLYESSAVLAQKMTITALRHLRQVAQEVSGEVVLGWGRQPAALRAFSQRLCRGFNEAVNGFVDDGWSVLGSDGVEDVIIAINSSPRKLLGSQLASSDGLSALNGGILCAKASMLLQNLPPALLVRFLREHRSEWADCNIDAYSSATTKANAYNVPGSLEGITGSQVILPLAHTVEHEEFLEVIKLEGYGLTHEEALLSKDMFLLQLCSGIDEHAAGFCAQLVFAPIDASFADDAPLLPSGFRVIPLESGSDASPPNRTLDLASALEVGSAGTRTSGDCGDGPYNMRSVLTIAFQFTYQNHVRDNVAAMALQYVRHVIASVQRVAITLAPSLQSSHLGPMPLPGTPEALTLARWICQSYRMHLGLELLGANSETNESVLKLLWHHSDGIMCCSWKTMPVFTFANQAGLDMLETTLVALQDISLEKVLDETGRKRLCSDFTQIMQQGYAYLPAGMCVSSMGRPVSYDRAIAWKVLNDEDSTHCIAFVFVNWSFV","length":516,"molWeight":56027,"crc64":"B458F6CBDAC75719","md5":"05E869BA60B6D223C08F37410FC95035"},"extraAttributes":{"countByFeatureType":{"Domain":2,"Non-terminal residue":1},"uniParcId":"UPI0018A3EE9C"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A7M1ILH0","uniProtkbId":"A0A7M1ILH0_9CONI","entryAudit":{"firstPublicDate":"2021-04-07","lastAnnotationUpdateDate":"2025-10-08","lastSequenceUpdateDate":"2021-04-07","entryVersion":18,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51210.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51210.1"}],"value":"Class III HD-Zip protein"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51210.1"}],"value":"C3HDZ_C"}}],"features":[{"type":"Domain","location":{"start":{"value":59,"modifier":"EXACT"},"end":{"value":260,"modifier":"EXACT"}},"description":"START","evidences":[{"evidenceCode":"ECO:0000259","source":"PROSITE","id":"PS50848"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51210.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":431,"modifier":"EXACT"},"end":{"value":431,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51210.1"}]}],"references":[{"referenceNumber":1,"citation":{"id":"33028198","citationType":"journal article","authors":["Du H.","Ran J.H.","Feng Y.Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"33028198"}],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"2020","journal":"BMC Evol. Biol.","firstPage":"0","lastPage":"131","volume":"20"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51210.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT557847","properties":[{"key":"ProteinId","value":"QOQ51210.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A7M1ILH0","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0003700","properties":[{"key":"GoTerm","value":"F:DNA-binding transcription factor activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0008289","properties":[{"key":"GoTerm","value":"F:lipid binding"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"Gene3D","id":"3.30.530.20","properties":[{"key":"EntryName","value":"-"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR044830","properties":[{"key":"EntryName","value":"HD-Zip_III"}]},{"database":"InterPro","id":"IPR023393","properties":[{"key":"EntryName","value":"START-like_dom_sf"}]},{"database":"InterPro","id":"IPR002913","properties":[{"key":"EntryName","value":"START_lipid-bd_dom"}]},{"database":"PANTHER","id":"PTHR45950","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR45950:SF7","properties":[{"key":"EntryName","value":"HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF01852","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]},{"database":"SMART","id":"SM00234","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF55961","properties":[{"key":"EntryName","value":"Bet v1-like"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS50848","properties":[{"key":"EntryName","value":"START"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"LLVEENGRLQKQVSRLVHDNGNFRQHLNNKYAPIADTNGESVVAIAWPESHMSPRHPPKDASYAGLLSIAEETLKEFLSKATGTAIEWIQIPGMKPGPDSISIVGISCSCTGVAARACALVGLEPSKISTILKDRSLWFSDCRCLDVLSAFSTGNGGTIELLYMQIYAPTTLASARDFWTLRYTSVLEDGSIVVCERSLTGTQGGPSMPSVPNFVRAIMFPSGYLIRPCEGGGSVIHIVDHMDLEPCTVPEVLRPLYESSTVLAQTMTIMALNSIYQIAQGISGETVPGSRHLSTMRILSKRMNRGFSEAINCLSDDGWTLMVTDGMEEVTLSINTSPSKLLGSKFSSTEGIPSLGFGILCAKTSMLLQNVSPTLLVQFLREHRSEWADCGIDIYSAATLKTSPFKLPSSQANCFEAGQFMPSIGHTIQHE","length":431,"molWeight":46744,"crc64":"58C34E80CBFE05C5","md5":"2524549B895AC25A7C039ED556EF2149"},"extraAttributes":{"countByFeatureType":{"Domain":1,"Non-terminal residue":2},"uniParcId":"UPI0018A4E6C1"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"A0A7M1ILW5","uniProtkbId":"A0A7M1ILW5_9CONI","entryAudit":{"firstPublicDate":"2021-04-07","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2021-04-07","entryVersion":17,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51173.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"2: Evidence at transcript level","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51173.1"}],"value":"YABBY transcription factor"}}]},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51173.1"}],"value":"YAB_C"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004123"}],"value":"Nucleus","id":"SL-0191"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00010325"}],"value":"Belongs to the YABBY family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":9,"modifier":"EXACT"},"end":{"value":57,"modifier":"EXACT"}},"description":"YABBY N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF24868"}]},{"type":"Domain","location":{"start":{"value":94,"modifier":"EXACT"},"end":{"value":153,"modifier":"EXACT"}},"description":"YABBY protein C-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF04690"}]},{"type":"Region","location":{"start":{"value":60,"modifier":"EXACT"},"end":{"value":87,"modifier":"EXACT"}},"description":"Disordered","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]},{"type":"Compositional bias","location":{"start":{"value":71,"modifier":"EXACT"},"end":{"value":82,"modifier":"EXACT"}},"description":"Low complexity","evidences":[{"evidenceCode":"ECO:0000256","source":"SAM","id":"MobiDB-lite"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022723"}],"id":"KW-0479","category":"Ligand","name":"Metal-binding"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023242"}],"id":"KW-0539","category":"Cellular component","name":"Nucleus"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022833"}],"id":"KW-0862","category":"Ligand","name":"Zinc"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022771"}],"id":"KW-0863","category":"Domain","name":"Zinc-finger"}],"references":[{"referenceNumber":1,"citation":{"id":"33028198","citationType":"journal article","authors":["Du H.","Ran J.H.","Feng Y.Y.","Wang X.Q."],"citationCrossReferences":[{"database":"PubMed","id":"33028198"}],"title":"The flattened and needlelike leaves of the pine family (Pinaceae) share a conserved genetic network for adaxial-abaxial polarity but have diverged for photosynthetic adaptation.","publicationDate":"2020","journal":"BMC Evol. Biol.","firstPage":"0","lastPage":"131","volume":"20"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"QOQ51173.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"MT557819","properties":[{"key":"ProteinId","value":"QOQ51173.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"AlphaFoldDB","id":"A0A7M1ILW5","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0045165","properties":[{"key":"GoTerm","value":"P:cell fate commitment"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"Gene3D","id":"1.10.30.10","properties":[{"key":"EntryName","value":"High mobility group box domain"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR036910","properties":[{"key":"EntryName","value":"HMG_box_dom_sf"}]},{"database":"InterPro","id":"IPR006780","properties":[{"key":"EntryName","value":"YABBY"}]},{"database":"InterPro","id":"IPR056775","properties":[{"key":"EntryName","value":"YABBY_C"}]},{"database":"InterPro","id":"IPR056776","properties":[{"key":"EntryName","value":"YABBY_N"}]},{"database":"PANTHER","id":"PTHR31675","properties":[{"key":"EntryName","value":"PROTEIN YABBY 6-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF04690","properties":[{"key":"EntryName","value":"YABBY"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF24868","properties":[{"key":"EntryName","value":"YABBY_N"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF47095","properties":[{"key":"EntryName","value":"HMG-box"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MSGCIDSSATEHLCYVHCNFCSTILAVSVPSSSLFKIVTVRCGHCNHLLSVNMGASSPNEAGQIQNDYSKDSASSSSSSTISERTANSYAGNESVKMFSSMPPEKRQRVPSVYNRFIKEEIQRIKAKNPDIRHKEAFSAAAKNWAHFPHIHFGLMLENNKQATIDKGNLREGTQIGTVKDGRMATNLC","length":188,"molWeight":20643,"crc64":"6F99BEAAF8A39A82","md5":"759DFABD0B7EDE4971D7C46EB62661C2"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":2,"Region":1,"Compositional bias":1},"uniParcId":"UPI0018A5173E"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"Q9LLU2","uniProtkbId":"Q9LLU2_9CONI","entryAudit":{"firstPublicDate":"2000-10-01","lastAnnotationUpdateDate":"2026-01-28","lastSequenceUpdateDate":"2000-10-01","entryVersion":54,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF74016.2"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00012959"}],"value":"4-coumarate--CoA ligase"},"ecNumbers":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00012959"}],"value":"6.2.1.12"}]},"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF74016.2"}],"value":"4CL"}}],"comments":[{"commentType":"CATALYTIC ACTIVITY","reaction":{"name":"(E)-4-coumarate + ATP + CoA = (E)-4-coumaroyl-CoA + AMP + diphosphate","reactionCrossReferences":[{"database":"Rhea","id":"RHEA:19641"},{"database":"ChEBI","id":"CHEBI:12876"},{"database":"ChEBI","id":"CHEBI:30616"},{"database":"ChEBI","id":"CHEBI:33019"},{"database":"ChEBI","id":"CHEBI:57287"},{"database":"ChEBI","id":"CHEBI:85008"},{"database":"ChEBI","id":"CHEBI:456215"}],"ecNumber":"6.2.1.12","evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00034252"}]},"physiologicalReactions":[{"directionType":"left-to-right","reactionCrossReference":{"database":"Rhea","id":"RHEA:19642"},"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00034252"}]}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00006432"}],"value":"Belongs to the ATP-dependent AMP-binding enzyme family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":4,"modifier":"EXACT"},"end":{"value":302,"modifier":"EXACT"}},"description":"AMP-dependent synthetase/ligase","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF00501"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF74016.2"}]},{"type":"Non-terminal residue","location":{"start":{"value":317,"modifier":"EXACT"},"end":{"value":317,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF74016.2"}]}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022598"},{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF74016.2"}],"id":"KW-0436","category":"Molecular function","name":"Ligase"}],"references":[{"referenceNumber":1,"citation":{"id":"10779538","citationType":"journal article","authors":["Wang X.Q.","Tank D.C.","Sang T."],"citationCrossReferences":[{"database":"PubMed","id":"10779538"}],"title":"Phylogeny and divergence times in Pinaceae: evidence from three genomes.","publicationDate":"2000","journal":"Mol. Biol. Evol.","firstPage":"773","lastPage":"781","volume":"17"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF74016.2"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"AF144523","properties":[{"key":"ProteinId","value":"AAF74016.2"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"Q9LLU2","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0016207","properties":[{"key":"GoTerm","value":"F:4-coumarate-CoA ligase activity"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-EC"}]},{"database":"Gene3D","id":"3.40.50.12780","properties":[{"key":"EntryName","value":"N-terminal domain of ligase-like"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR020845","properties":[{"key":"EntryName","value":"AMP-binding_CS"}]},{"database":"InterPro","id":"IPR000873","properties":[{"key":"EntryName","value":"AMP-dep_synth/lig_dom"}]},{"database":"InterPro","id":"IPR042099","properties":[{"key":"EntryName","value":"ANL_N_sf"}]},{"database":"PANTHER","id":"PTHR24096:SF149","properties":[{"key":"EntryName","value":"AMP-BINDING DOMAIN-CONTAINING PROTEIN-RELATED"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR24096","properties":[{"key":"EntryName","value":"LONG-CHAIN-FATTY-ACID--COA LIGASE"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00501","properties":[{"key":"EntryName","value":"AMP-binding"},{"key":"MatchStatus","value":"1"}]},{"database":"SUPFAM","id":"SSF56801","properties":[{"key":"EntryName","value":"Acetyl-CoA synthetase-like"},{"key":"MatchStatus","value":"1"}]},{"database":"PROSITE","id":"PS00455","properties":[{"key":"EntryName","value":"AMP_BINDING"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"CLIDGATGKTYCFAEVELISRKVAAGLVNLGLQQGQVVMLLLQNCVEFAFVFMGAALRGAIVTTANPFYKPGEIAKQAKAAGARIIVTQAAYVDKLADLRSDNVIVITIDGAAKDGCQDISVLTEADETQCPSVEIQPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSEDVIMCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNMTSFLELIQKYKVTVAPIVPPVVLDITRSPAISQYDVSSVRIIMSGAAPLGKELEDALRDRFPQAIFGQGYGMTEAGPVLSMNLAFAKEPFPVKSGS","length":317,"molWeight":33805,"crc64":"BDA62DAD1A65527E","md5":"379F97AE3DE09C661B37A3A62B50E8F3"},"extraAttributes":{"countByCommentType":{"CATALYTIC ACTIVITY":1,"SIMILARITY":1},"countByFeatureType":{"Domain":1,"Non-terminal residue":2},"uniParcId":"UPI000009F50B"}},{"entryType":"UniProtKB unreviewed (TrEMBL)","primaryAccession":"Q9MP60","uniProtkbId":"Q9MP60_9CONI","entryAudit":{"firstPublicDate":"2000-10-01","lastAnnotationUpdateDate":"2026-11-04","lastSequenceUpdateDate":"2000-10-01","entryVersion":54,"sequenceVersion":1},"annotationScore":1.0,"organism":{"scientificName":"Nothotsuga longibracteata","taxonId":123601,"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}],"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Pinopsida","Pinidae","Conifers I","Pinales","Pinaceae","Nothotsuga"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"submissionNames":[{"fullName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}],"value":"NADH dehydrogenase subunit 5"}}],"flag":"Fragment"},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}],"value":"nad5"}}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004141"}],"value":"Membrane","id":"SL-0162"},"topology":{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00004141"}],"value":"Multi-pass membrane protein","id":"SL-9909"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00008200"}],"value":"Belongs to the complex I subunit 5 family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Domain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":37,"modifier":"EXACT"}},"description":"NADH-Ubiquinone oxidoreductase (complex I) chain 5 N-terminal","evidences":[{"evidenceCode":"ECO:0000259","source":"Pfam","id":"PF00662"}]},{"type":"Non-terminal residue","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":1,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}]},{"type":"Non-terminal residue","location":{"start":{"value":92,"modifier":"EXACT"},"end":{"value":92,"modifier":"EXACT"}},"description":"","evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}]}],"geneLocations":[{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}],"geneEncodingType":"Mitochondrion"}],"keywords":[{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023136"}],"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}],"id":"KW-0496","category":"Cellular component","name":"Mitochondrion"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00023027"}],"id":"KW-0520","category":"Ligand","name":"NAD"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022967"}],"id":"KW-1278","category":"Molecular function","name":"Translocase"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022692"}],"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022989"}],"id":"KW-1133","category":"Domain","name":"Transmembrane helix"},{"evidences":[{"evidenceCode":"ECO:0000256","source":"ARBA","id":"ARBA00022448"}],"id":"KW-0813","category":"Biological process","name":"Transport"}],"references":[{"referenceNumber":1,"citation":{"id":"10779538","citationType":"journal article","authors":["Wang X.Q.","Tank D.C.","Sang T."],"citationCrossReferences":[{"database":"PubMed","id":"10779538"}],"title":"Phylogeny and divergence times in Pinaceae: evidence from three genomes.","publicationDate":"2000","journal":"Mol. Biol. Evol.","firstPage":"773","lastPage":"781","volume":"17"},"referencePositions":["NUCLEOTIDE SEQUENCE"],"evidences":[{"evidenceCode":"ECO:0000313","source":"EMBL","id":"AAF67794.1"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"AF143420","properties":[{"key":"ProteinId","value":"AAF67794.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"AlphaFoldDB","id":"Q9MP60","properties":[{"key":"Description","value":"-"}]},{"database":"GO","id":"GO:0016020","properties":[{"key":"GoTerm","value":"C:membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"GO","id":"GO:0008137","properties":[{"key":"GoTerm","value":"F:NADH dehydrogenase (ubiquinone) activity"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0042773","properties":[{"key":"GoTerm","value":"P:ATP synthesis coupled electron transport"},{"key":"GoEvidenceType","value":"IEA:InterPro"}]},{"database":"GO","id":"GO:0015990","properties":[{"key":"GoTerm","value":"P:electron transport coupled proton transport"},{"key":"GoEvidenceType","value":"IEA:TreeGrafter"}]},{"database":"InterPro","id":"IPR003945","properties":[{"key":"EntryName","value":"NU5C-like"}]},{"database":"InterPro","id":"IPR001516","properties":[{"key":"EntryName","value":"Proton_antipo_N"}]},{"database":"PANTHER","id":"PTHR42829","properties":[{"key":"EntryName","value":"NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"},{"key":"MatchStatus","value":"1"}]},{"database":"PANTHER","id":"PTHR42829:SF2","properties":[{"key":"EntryName","value":"NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF00662","properties":[{"key":"EntryName","value":"Proton_antipo_N"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"FDSPTVVMPIVVTFVSSLVHPHPISYMSEDPHSPRFMCYSSIPTFFTPMSVTGDNFIQLFPGWEGVGLAPYSSINSRSTRLQANKAAIKAML","length":92,"molWeight":10153,"crc64":"584321055FFDB738","md5":"B4B862353CACB56EB0DEA9FEACCB6BF4"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1},"countByFeatureType":{"Domain":1,"Non-terminal residue":2},"uniParcId":"UPI000009388C"}}]}