{ "openapi" : "3.0.1", "info" : { "title" : "OpenAPI definition", "version" : "v0" }, "servers" : [ { "url" : "https://rest.uniprot.org/", "description" : "UniProt REST API Server" } ], "tags" : [ { "name" : "UniProtKB", "description" : "The UniProt Knowledgebase (UniProtKB) acts as the global hub of accurate, consistent and expertly curated information on protein sequence and function. Each UniProtKB entry is described by a stable protein identifier (accession ID) and contains core data consisting of the amino acid sequence, protein name or description, taxonomic information and links to relevant scientific publications. Further annotation is added when available, such as protein function, subcellular location and the position of protein features such as active sites, domains and post-translational modifications. Where possible these annotations are described using established biological ontologies, classifications and cross-references. A clear indication of the quality of annotation in the form of evidence attribution of experimental and computational data is added to each piece of data." } ], "paths" : { "/uniprotkb/{accession}" : { "get" : { "tags" : [ "UniProtKB" ], "summary" : "Get UniProtKB entry by a single accession.", "description" : "Search UniProtKB by protein entry accession to return all data associated with that entry. Specify fields to return only data for specific sections of that entry that are of interest to you", "operationId" : "getByAccession", "parameters" : [ { "name" : "accession", "in" : "path", "description" : "Unique and stable identifier for each UniProtKB entry", "required" : true, "schema" : { "pattern" : "([OPQ][0-9][A-Z0-9]{3}[0-9]|[A-NR-Z]([0-9][A-Z][A-Z0-9]{2}){1,2}[0-9])(((-[0-9]{1,3})?(\\[\\d+-\\d+\\])?)|(\\.[0-9]{1,3})|(_[A-Z0-9]{2,5}))?|[A-Z0-9]{2,5}_[A-Z0-9]{2,5}", "type" : "string" }, "example" : "P05067" }, { "name" : "fields", "in" : "query", "description" : "List of entry sections (fields) to be returned, separated by commas. List of valid fields", "required" : false, "schema" : { "type" : "string" }, "example" : "accession,protein_name,cc_function,ft_binding" }, { "name" : "version", "in" : "query", "description" : "Version of the entry. Versions are integers 1 or above; enter last for the latest version.
Please note that when passing version file formats are restricted to fasta and txt only", "required" : false, "schema" : { "type" : "string" } } ], "responses" : { "default" : { "description" : "default response", "content" : { "application/json" : { "schema" : { "$ref" : "#/components/schemas/UniProtKBEntry" } }, "application/xml" : { "schema" : { "$ref" : "#/components/schemas/Entry" } }, "text/plain;format=tsv" : { }, "text/plain;format=flatfile" : { }, "text/plain;format=list" : { }, "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" : { }, "text/plain;format=fasta" : { }, "text/plain;format=gff" : { }, "application/rdf+xml" : { }, "text/turtle" : { }, "application/n-triples" : { } } } } } }, "/uniprotkb/stream" : { "get" : { "tags" : [ "UniProtKB" ], "summary" : "Download UniProtKB entries retrieved by a search query. (Max. 10 million entries)", "description" : "The stream endpoint uses a request query to return all entries associated with the search term in a single download. Specify fields to return only data for specific sections of that entry that are of interest to you The stream endpoint has a maximum limit of 10 million entries. For larger requests, please use the 'UniProtKB asynchronous download job' requests described below. The 'UniProtKB asynchronous download job' requests can be used for any size -- the asynchronous download jobs can be paused and resumed at your convenience, unlike the stream endpoint.", "operationId" : "stream", "parameters" : [ { "name" : "query", "in" : "query", "description" : "Criteria to search UniProtKB. Advanced queries can be built with parentheses and conditionals such as AND, OR and NOT. List of valid search fields", "required" : true, "schema" : { "type" : "string" }, "example" : "insulin AND reviewed:true" }, { "name" : "fields", "in" : "query", "description" : "List of entry sections (fields) to be returned, separated by commas. List of valid fields", "required" : false, "schema" : { "type" : "string" }, "example" : "accession,protein_name,cc_function,ft_binding" }, { "name" : "sort", "in" : "query", "description" : "Specify field by which to sort results. List of valid sort fields", "required" : false, "schema" : { "type" : "string" }, "example" : "accession desc" }, { "name" : "includeIsoform", "in" : "query", "description" : "Specify true to include isoforms, default is false.", "required" : false, "schema" : { "pattern" : "true|false", "type" : "boolean" } }, { "name" : "download", "in" : "query", "description" : "Specify true to download as file, default is false.", "required" : false, "schema" : { "pattern" : "^true$|^false$", "type" : "boolean" } } ], "responses" : { "default" : { "description" : "default response", "content" : { "application/json" : { "schema" : { "$ref" : "#/components/schemas/StreamResult" } }, "application/xml" : { "schema" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Entry" } } }, "text/plain;format=tsv" : { }, "text/plain;format=flatfile" : { }, "text/plain;format=list" : { }, "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" : { }, "text/plain;format=fasta" : { }, "text/plain;format=gff" : { } } } } } }, "/uniprotkb/search" : { "get" : { "tags" : [ "UniProtKB" ], "summary" : "Retrieve UniProtKB entries by a search query.", "description" : "The search endpoint uses a request query to return all entries associated with the search term in a paginated list of entries. Use ‘size’ to specify the number of entries per page of results. Specify fields to return only data for specific sections of that entry that are of interest to you", "operationId" : "searchCursor", "parameters" : [ { "name" : "query", "in" : "query", "description" : "Criteria to search UniProtKB. Advanced queries can be built with parentheses and conditionals such as AND, OR and NOT. List of valid search fields", "required" : true, "schema" : { "type" : "string" }, "example" : "insulin AND reviewed:true" }, { "name" : "fields", "in" : "query", "description" : "List of entry sections (fields) to be returned, separated by commas. List of valid fields", "required" : false, "schema" : { "type" : "string" }, "example" : "accession,protein_name,cc_function,ft_binding" }, { "name" : "sort", "in" : "query", "description" : "Specify field by which to sort results. List of valid sort fields", "required" : false, "schema" : { "type" : "string" }, "example" : "accession desc" }, { "name" : "includeIsoform", "in" : "query", "description" : "Specify true to include isoforms, default is false.", "required" : false, "schema" : { "pattern" : "true|false", "type" : "boolean" } }, { "name" : "size", "in" : "query", "description" : "Specify the number of entries per page of results (Pagination size). Default is 25, max is 500", "required" : false, "schema" : { "maximum" : 500, "minimum" : 0, "type" : "integer", "format" : "int32" }, "example" : 50 } ], "responses" : { "default" : { "description" : "UniProtKBEntry", "content" : { "application/json" : { "schema" : { "$ref" : "#/components/schemas/SearchResult" } }, "application/xml" : { "schema" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Entry" } } }, "text/plain;format=tsv" : { }, "text/plain;format=flatfile" : { }, "text/plain;format=list" : { }, "application/vnd.openxmlformats-officedocument.spreadsheetml.sheet" : { }, "text/plain;format=fasta" : { }, "text/plain;format=gff" : { } } } } } } }, "components" : { "schemas" : { "AlternativeSequence" : { "type" : "object", "properties" : { "originalSequence" : { "type" : "string" }, "alternativeSequences" : { "type" : "array", "items" : { "type" : "string" } } } }, "Citation" : { "type" : "object", "properties" : { "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "citationType" : { "type" : "string", "enum" : [ "journal article", "book", "online journal article", "patent", "submission", "thesis", "UniProt indexed literatures", "unpublished observations" ] }, "title" : { "type" : "string" }, "id" : { "type" : "string" } }, "allOf" : [ { "$ref" : "#/components/schemas/Book" }, { "$ref" : "#/components/schemas/ElectronicArticle" }, { "$ref" : "#/components/schemas/JournalArticle" }, { "$ref" : "#/components/schemas/Literature" }, { "$ref" : "#/components/schemas/Patent" }, { "$ref" : "#/components/schemas/Submission" }, { "$ref" : "#/components/schemas/Thesis" } ] }, "Comment" : { "type" : "object", "properties" : { "commentType" : { "type" : "string", "enum" : [ "FUNCTION", "CATALYTIC ACTIVITY", "COFACTOR", "ACTIVITY REGULATION", "BIOPHYSICOCHEMICAL PROPERTIES", "PATHWAY", "SUBUNIT", "INTERACTION", "SUBCELLULAR LOCATION", "ALTERNATIVE PRODUCTS", "TISSUE SPECIFICITY", "DEVELOPMENTAL STAGE", "INDUCTION", "DOMAIN", "PTM", "RNA EDITING", "MASS SPECTROMETRY", "POLYMORPHISM", "DISEASE", "DISRUPTION PHENOTYPE", "ALLERGEN", "TOXIC DOSE", "BIOTECHNOLOGY", "PHARMACEUTICAL", "MISCELLANEOUS", "SIMILARITY", "CAUTION", "SEQUENCE CAUTION", "WEB RESOURCE", "UNKOWN" ] } }, "allOf" : [ { "$ref" : "#/components/schemas/AlternativeProductsComment" }, { "$ref" : "#/components/schemas/BPCPComment" }, { "$ref" : "#/components/schemas/CatalyticActivityComment" }, { "$ref" : "#/components/schemas/CofactorComment" }, { "$ref" : "#/components/schemas/DiseaseComment" }, { "$ref" : "#/components/schemas/FreeTextComment" }, { "$ref" : "#/components/schemas/InteractionComment" }, { "$ref" : "#/components/schemas/MassSpectrometryComment" }, { "$ref" : "#/components/schemas/RnaEditingComment" }, { "$ref" : "#/components/schemas/SequenceCautionComment" }, { "$ref" : "#/components/schemas/SubcellularLocationComment" }, { "$ref" : "#/components/schemas/WebResourceComment" } ] }, "CrossReferenceCitationDatabase" : { "type" : "object", "properties" : { "database" : { "type" : "string", "enum" : [ "PubMed", "DOI", "AGRICOLA" ] }, "properties" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Property" } }, "id" : { "type" : "string" } } }, "CrossReferenceEvidenceDatabase" : { "type" : "object", "properties" : { "database" : { "$ref" : "#/components/schemas/EvidenceDatabase" }, "properties" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Property" } }, "id" : { "type" : "string" } } }, "CrossReferenceUniprotKBFeatureDatabase" : { "type" : "object", "properties" : { "database" : { "type" : "string", "enum" : [ "dbSNP", "ChEBI" ] }, "properties" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Property" } }, "id" : { "type" : "string" } } }, "EC" : { "type" : "object", "properties" : { "valid" : { "type" : "boolean" }, "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "EntryAudit" : { "type" : "object", "properties" : { "firstPublicDate" : { "type" : "string", "format" : "date" }, "sequenceVersion" : { "type" : "integer", "format" : "int32" }, "lastAnnotationUpdateDate" : { "type" : "string", "format" : "date" }, "lastSequenceUpdateDate" : { "type" : "string", "format" : "date" }, "entryVersion" : { "type" : "integer", "format" : "int32" } } }, "EntryInactiveReason" : { "type" : "object", "properties" : { "deletedReason" : { "type" : "string", "enum" : [ "", "Undefined", "Deleted from sequence source (EMBL)", "Deleted from sequence source (TAIR)", "Deleted from sequence source (SGD)", "Deleted from sequence source (ENSEMBL)", "Deleted from sequence source (PDB)", "Deleted from sequence source (RefSeq)", "Deleted from Swiss-Prot", "Redundant sequence", "Redundant proteome", "Excluded proteome", "Over-represented sequence", "Not part of a reference proteome" ] }, "inactiveReasonType" : { "type" : "string", "enum" : [ "DELETED", "MERGED", "DEMERGED" ] }, "mergeDemergeTos" : { "type" : "array", "items" : { "type" : "string" } } } }, "Evidence" : { "type" : "object", "properties" : { "evidenceCode" : { "type" : "string" }, "id" : { "type" : "string" }, "source" : { "type" : "string" } } }, "EvidenceDatabase" : { "type" : "object", "properties" : { "name" : { "type" : "string" }, "evidenceDatabaseDetail" : { "$ref" : "#/components/schemas/EvidenceDatabaseDetail" }, "reference" : { "type" : "boolean" } } }, "EvidenceDatabaseDetail" : { "type" : "object", "properties" : { "name" : { "type" : "string" }, "displayName" : { "type" : "string" }, "category" : { "type" : "string", "enum" : [ "I", "C", "A" ] }, "uriLink" : { "type" : "string" } } }, "EvidenceLine" : { "type" : "object", "properties" : { "evidence" : { "type" : "string" }, "createDate" : { "type" : "string", "format" : "date" }, "curator" : { "type" : "string" } } }, "FeatureLocation" : { "type" : "object", "properties" : { "start" : { "$ref" : "#/components/schemas/Position" }, "end" : { "$ref" : "#/components/schemas/Position" }, "sequence" : { "type" : "string" } } }, "Gene" : { "type" : "object", "properties" : { "geneName" : { "$ref" : "#/components/schemas/GeneName" }, "orfNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ORFName" } }, "orderedLocusNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/OrderedLocusName" } }, "synonyms" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/GeneNameSynonym" } } } }, "GeneLocation" : { "type" : "object", "properties" : { "geneEncodingType" : { "type" : "string", "enum" : [ "unknown", "Hydrogenosome", "Mitochondrion", "Nucleomorph", "Plasmid", "Plastid", "Apicoplast", "Chloroplast", "Cyanelle", "Non-photosynthetic plastid", "Organellar chromatophore" ] }, "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "GeneName" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "GeneNameSynonym" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "InternalLine" : { "type" : "object", "properties" : { "type" : { "type" : "string", "enum" : [ "CL", "CP", "CX", "DR", "DG", "GO", "EV", "HA", "HR", "HW", "HU", "HP", "ID", "IS", "NI", "PM", "SO", "YY", "ZA", "ZB", "ZC", "ZR", "ZZ", "ET", "PE", "RU", "TX", "PROSITE", "UP", "ZD" ] }, "value" : { "type" : "string" } } }, "InternalSection" : { "type" : "object", "properties" : { "internalLines" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/InternalLine" } }, "sourceLines" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/SourceLine" } }, "evidenceLines" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidenceLine" } } } }, "Keyword" : { "type" : "object", "properties" : { "category" : { "type" : "string", "enum" : [ "Biological process", "Cellular component", "Coding sequence diversity", "Developmental stage", "Disease", "Domain", "Ligand", "Molecular function", "PTM", "Technical term", "Unknown" ] }, "name" : { "type" : "string" }, "id" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "Ligand" : { "type" : "object", "properties" : { "note" : { "type" : "string" }, "name" : { "type" : "string" }, "id" : { "type" : "string" }, "label" : { "type" : "string" } } }, "LigandPart" : { "type" : "object", "properties" : { "note" : { "type" : "string" }, "name" : { "type" : "string" }, "id" : { "type" : "string" }, "label" : { "type" : "string" } } }, "Name" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "ORFName" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "OrderedLocusName" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "Organism" : { "type" : "object", "properties" : { "lineages" : { "type" : "array", "items" : { "type" : "string" } }, "taxonId" : { "type" : "integer", "format" : "int64" }, "commonName" : { "type" : "string" }, "synonyms" : { "type" : "array", "items" : { "type" : "string" } }, "scientificName" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "OrganismHost" : { "type" : "object", "properties" : { "taxonId" : { "type" : "integer", "format" : "int64" }, "commonName" : { "type" : "string" }, "synonyms" : { "type" : "array", "items" : { "type" : "string" } }, "scientificName" : { "type" : "string" } } }, "Position" : { "type" : "object", "properties" : { "value" : { "type" : "integer", "format" : "int32" }, "modifier" : { "type" : "string", "enum" : [ "EXACT", "OUTSIDE", "UNKNOWN", "UNSURE" ] } } }, "Property" : { "type" : "object", "properties" : { "key" : { "type" : "string" }, "value" : { "type" : "string" } } }, "ProteinDescription" : { "type" : "object", "properties" : { "recommendedName" : { "$ref" : "#/components/schemas/ProteinName" }, "submissionNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ProteinSubName" } }, "includes" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ProteinSection" } }, "allergenName" : { "$ref" : "#/components/schemas/Name" }, "biotechName" : { "$ref" : "#/components/schemas/Name" }, "cdAntigenNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Name" } }, "alternativeNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ProteinName" } }, "innNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Name" } }, "contains" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ProteinSection" } }, "flag" : { "type" : "string" } } }, "ProteinName" : { "type" : "object", "properties" : { "shortNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Name" } }, "ecNumbers" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EC" } }, "valid" : { "type" : "boolean" }, "fullName" : { "$ref" : "#/components/schemas/Name" } } }, "ProteinSection" : { "type" : "object", "properties" : { "recommendedName" : { "$ref" : "#/components/schemas/ProteinName" }, "allergenName" : { "$ref" : "#/components/schemas/Name" }, "biotechName" : { "$ref" : "#/components/schemas/Name" }, "cdAntigenNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Name" } }, "alternativeNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ProteinName" } }, "innNames" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Name" } } } }, "ProteinSubName" : { "type" : "object", "properties" : { "ecNumbers" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EC" } }, "valid" : { "type" : "boolean" }, "fullName" : { "$ref" : "#/components/schemas/Name" } } }, "ReferenceComment" : { "type" : "object", "properties" : { "type" : { "type" : "string", "enum" : [ "STRAIN", "PLASMID", "TRANSPOSON", "TISSUE" ] }, "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "Sequence" : { "type" : "object", "properties" : { "type" : { "type" : "string", "xml" : { "attribute" : true } }, "ref" : { "type" : "string", "xml" : { "attribute" : true } } } }, "SourceLine" : { "type" : "object", "properties" : { "value" : { "type" : "string" } } }, "TaxonomyLineage" : { "type" : "object", "properties" : { "rank" : { "type" : "string", "enum" : [ "strain", "serotype", "series", "morph", "biotype", "clade", "genotype", "isolate", "forma specialis", "pathogroup", "serogroup", "section", "subsection", "forma", "varietas", "subspecies", "species", "species subgroup", "species group", "subgenus", "genus", "subtribe", "tribe", "subfamily", "family", "superfamily", "parvorder", "infraorder", "suborder", "order", "superorder", "subcohort", "cohort", "infraclass", "subclass", "class", "superclass", "subphylum", "phylum", "superphylum", "subkingdom", "kingdom", "superkingdom", "realm", "domain", "subvariety", "acellular root", "cellular root", "no rank" ] }, "taxonId" : { "type" : "integer", "format" : "int64" }, "hidden" : { "type" : "boolean" }, "commonName" : { "type" : "string" }, "synonyms" : { "type" : "array", "items" : { "type" : "string" } }, "scientificName" : { "type" : "string" } } }, "UniProtDatabaseAttribute" : { "type" : "object", "properties" : { "name" : { "type" : "string" }, "xmlTag" : { "type" : "string" }, "uriLink" : { "type" : "string" } } }, "UniProtDatabaseDetail" : { "type" : "object", "properties" : { "name" : { "type" : "string" }, "displayName" : { "type" : "string" }, "category" : { "type" : "string", "enum" : [ "Sequence databases", "3D structure databases", "Protein-protein interaction databases", "Chemistry", "Protein family/group databases", "PTM databases", "Genetic variation databases", "2D gel databases", "Proteomic databases", "Protocols and materials databases", "Genome annotation databases", "Organism-specific databases", "Phylogenomic databases", "Enzyme and pathway databases", "Miscellaneous", "Gene expression databases", "Family and domain databases", "Ontologies", "Proteomes databases", "Unknown" ] }, "uniProtDataTypes" : { "type" : "array", "items" : { "type" : "string" } }, "uriLink" : { "type" : "string" }, "attributes" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/UniProtDatabaseAttribute" } }, "implicit" : { "type" : "boolean" }, "linkedReason" : { "type" : "string" }, "idMappingName" : { "type" : "string" }, "type" : { "type" : "string" } } }, "UniProtKBCrossReference" : { "type" : "object", "properties" : { "isoformId" : { "type" : "string" }, "database" : { "type" : "string" }, "properties" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Property" } }, "id" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "UniProtKBEntry" : { "type" : "object", "properties" : { "secondaryAccessions" : { "type" : "array", "items" : { "type" : "string" } }, "proteinDescription" : { "$ref" : "#/components/schemas/ProteinDescription" }, "keywords" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Keyword" } }, "sequence" : { "$ref" : "#/components/schemas/Sequence" }, "internalSection" : { "$ref" : "#/components/schemas/InternalSection" }, "fragment" : { "type" : "boolean" }, "entryType" : { "type" : "string", "enum" : [ "UniProtKB reviewed (Swiss-Prot)", "UniProtKB unreviewed (TrEMBL)", "Inactive", "UNKNOWN" ] }, "annotationScore" : { "type" : "number", "format" : "double" }, "entryAudit" : { "$ref" : "#/components/schemas/EntryAudit" }, "organismHosts" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/OrganismHost" } }, "genes" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Gene" } }, "comments" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Comment" } }, "geneLocations" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/GeneLocation" } }, "uniProtkbId" : { "type" : "string" }, "uniProtKBCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/UniProtKBCrossReference" } }, "features" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/UniProtKBFeature" } }, "proteinExistence" : { "type" : "string", "enum" : [ "1: Evidence at protein level", "2: Evidence at transcript level", "3: Inferred from homology", "4: Predicted", "5: Uncertain", "UNKNOWN" ] }, "primaryAccession" : { "type" : "string" }, "inactiveReason" : { "$ref" : "#/components/schemas/EntryInactiveReason" }, "lineages" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/TaxonomyLineage" } }, "organism" : { "$ref" : "#/components/schemas/Organism" }, "references" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/UniProtKBReference" } }, "active" : { "type" : "boolean" }, "extraAttributes" : { "type" : "object", "additionalProperties" : { "type" : "object" } } } }, "UniProtKBFeature" : { "type" : "object", "properties" : { "alternativeSequence" : { "$ref" : "#/components/schemas/AlternativeSequence" }, "featureId" : { "type" : "string" }, "ligand" : { "$ref" : "#/components/schemas/Ligand" }, "ligandPart" : { "$ref" : "#/components/schemas/LigandPart" }, "featureCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceUniprotKBFeatureDatabase" } }, "location" : { "$ref" : "#/components/schemas/FeatureLocation" }, "type" : { "type" : "string", "enum" : [ "Initiator methionine", "Signal", "Propeptide", "Transit peptide", "Chain", "Peptide", "Topological domain", "Transmembrane", "Intramembrane", "Domain", "Repeat", "Calcium binding", "Zinc finger", "DNA binding", "Nucleotide binding", "Region", "Coiled coil", "Motif", "Compositional bias", "Active site", "Metal binding", "Binding site", "Site", "Non-standard residue", "Modified residue", "Lipidation", "Glycosylation", "Disulfide bond", "Cross-link", "Alternative sequence", "Natural variant", "Mutagenesis", "Sequence uncertainty", "Sequence conflict", "Non-adjacent residues", "Non-terminal residue", "Helix", "Turn", "Beta strand" ] }, "description" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "UniProtKBReference" : { "type" : "object", "properties" : { "referenceNumber" : { "type" : "integer", "format" : "int32" }, "referencePositions" : { "type" : "array", "items" : { "type" : "string" } }, "referenceComments" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ReferenceComment" } }, "citation" : { "$ref" : "#/components/schemas/Citation" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "Absorption" : { "type" : "object", "properties" : { "approximate" : { "type" : "boolean" }, "note" : { "$ref" : "#/components/schemas/Note" }, "max" : { "type" : "integer", "format" : "int32" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "AlternativeName" : { "type" : "object", "properties" : { "fullName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "shortName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "ecNumber" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "CitationType" : { "type" : "object", "properties" : { "title" : { "type" : "string" }, "editorList" : { "$ref" : "#/components/schemas/NameListType" }, "authorList" : { "$ref" : "#/components/schemas/NameListType" }, "locator" : { "type" : "string" }, "dbReference" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/DbReferenceType" } }, "type" : { "type" : "string", "xml" : { "attribute" : true } }, "date" : { "type" : "string", "xml" : { "attribute" : true } }, "name" : { "type" : "string", "xml" : { "attribute" : true } }, "volume" : { "type" : "string", "xml" : { "attribute" : true } }, "first" : { "type" : "string", "xml" : { "attribute" : true } }, "last" : { "type" : "string", "xml" : { "attribute" : true } }, "publisher" : { "type" : "string", "xml" : { "attribute" : true } }, "city" : { "type" : "string", "xml" : { "attribute" : true } }, "db" : { "type" : "string", "xml" : { "attribute" : true } }, "number" : { "type" : "string", "xml" : { "attribute" : true } }, "institute" : { "type" : "string", "xml" : { "attribute" : true } }, "country" : { "type" : "string", "xml" : { "attribute" : true } } } }, "CofactorType" : { "required" : [ "dbReference", "name" ], "type" : "object", "properties" : { "name" : { "type" : "string" }, "dbReference" : { "$ref" : "#/components/schemas/DbReferenceType" }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "CommentType" : { "type" : "object", "properties" : { "molecule" : { "$ref" : "#/components/schemas/MoleculeType" }, "absorption" : { "$ref" : "#/components/schemas/Absorption" }, "kinetics" : { "$ref" : "#/components/schemas/Kinetics" }, "phDependence" : { "$ref" : "#/components/schemas/PhDependence" }, "redoxPotential" : { "$ref" : "#/components/schemas/RedoxPotential" }, "temperatureDependence" : { "$ref" : "#/components/schemas/TemperatureDependence" }, "reaction" : { "$ref" : "#/components/schemas/ReactionType" }, "physiologicalReaction" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/PhysiologicalReactionType" } }, "cofactor" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CofactorType" } }, "subcellularLocation" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/SubcellularLocationType" } }, "conflict" : { "$ref" : "#/components/schemas/Conflict" }, "link" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Link" } }, "event" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EventType" } }, "isoform" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/IsoformType" } }, "interactant" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/InteractantType" } }, "organismsDiffer" : { "type" : "boolean", "default" : false }, "experiments" : { "type" : "integer", "format" : "int32" }, "disease" : { "$ref" : "#/components/schemas/Disease" }, "location" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/LocationType" } }, "text" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "type" : { "type" : "string", "xml" : { "attribute" : true } }, "locationType" : { "type" : "string", "xml" : { "attribute" : true } }, "name" : { "type" : "string", "xml" : { "attribute" : true } }, "mass" : { "type" : "number", "format" : "float", "xml" : { "attribute" : true } }, "error" : { "type" : "string", "xml" : { "attribute" : true } }, "method" : { "type" : "string", "xml" : { "attribute" : true } }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "Component" : { "type" : "object", "properties" : { "recommendedName" : { "$ref" : "#/components/schemas/RecommendedName" }, "alternativeName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/AlternativeName" } }, "submittedName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/SubmittedName" } }, "allergenName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "biotechName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "cdAntigenName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "innName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "Conflict" : { "type" : "object", "properties" : { "sequence" : { "$ref" : "#/components/schemas/Sequence" }, "type" : { "type" : "string", "xml" : { "attribute" : true } }, "ref" : { "type" : "string", "xml" : { "attribute" : true } } } }, "DbReferenceType" : { "type" : "object", "properties" : { "molecule" : { "$ref" : "#/components/schemas/MoleculeType" }, "property" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/PropertyType" } }, "type" : { "type" : "string", "xml" : { "attribute" : true } }, "id" : { "type" : "string", "xml" : { "attribute" : true } }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "Disease" : { "type" : "object", "properties" : { "diseaseAccession" : { "type" : "string" }, "diseaseId" : { "type" : "string" }, "acronym" : { "type" : "string" }, "diseaseCrossReference" : { "$ref" : "#/components/schemas/CrossReferenceDiseaseDatabase" }, "description" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "Domain" : { "type" : "object", "properties" : { "recommendedName" : { "$ref" : "#/components/schemas/RecommendedName" }, "alternativeName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/AlternativeName" } }, "submittedName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/SubmittedName" } }, "allergenName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "biotechName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "cdAntigenName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "innName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "Entry" : { "required" : [ "accession", "name", "organism", "protein", "proteinExistence", "reference", "sequence" ], "type" : "object", "properties" : { "accession" : { "type" : "array", "items" : { "type" : "string" } }, "name" : { "type" : "array", "items" : { "type" : "string" } }, "protein" : { "$ref" : "#/components/schemas/ProteinType" }, "gene" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/GeneType" } }, "organism" : { "$ref" : "#/components/schemas/OrganismType" }, "organismHost" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/OrganismType" } }, "geneLocation" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/GeneLocationType" } }, "reference" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ReferenceType" } }, "comment" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CommentType" } }, "dbReference" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/DbReferenceType" } }, "proteinExistence" : { "$ref" : "#/components/schemas/ProteinExistenceType" }, "keyword" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/KeywordType" } }, "feature" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/FeatureType" } }, "evidence" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidenceType" } }, "sequence" : { "$ref" : "#/components/schemas/SequenceType" }, "dataset" : { "type" : "string", "xml" : { "attribute" : true } }, "created" : { "type" : "string", "format" : "date-time", "xml" : { "attribute" : true } }, "modified" : { "type" : "string", "format" : "date-time", "xml" : { "attribute" : true } }, "version" : { "type" : "integer", "format" : "int32", "xml" : { "attribute" : true } } }, "xml" : { "name" : "entry", "namespace" : "http://uniprot.org/uniprot" } }, "EventType" : { "type" : "object", "properties" : { "type" : { "type" : "string", "xml" : { "attribute" : true } } } }, "EvidenceType" : { "type" : "object", "properties" : { "source" : { "$ref" : "#/components/schemas/SourceType" }, "importedFrom" : { "$ref" : "#/components/schemas/ImportedFromType" }, "type" : { "type" : "string", "xml" : { "attribute" : true } }, "key" : { "type" : "integer", "xml" : { "attribute" : true } } } }, "EvidencedStringType" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "FeatureType" : { "required" : [ "location" ], "type" : "object", "properties" : { "original" : { "type" : "string" }, "variation" : { "type" : "array", "items" : { "type" : "string" } }, "location" : { "$ref" : "#/components/schemas/LocationType" }, "ligand" : { "$ref" : "#/components/schemas/LigandType" }, "ligandPart" : { "$ref" : "#/components/schemas/LigandPartType" }, "type" : { "type" : "string", "xml" : { "attribute" : true } }, "id" : { "type" : "string", "xml" : { "attribute" : true } }, "description" : { "type" : "string", "xml" : { "attribute" : true } }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } }, "ref" : { "type" : "string", "xml" : { "attribute" : true } } } }, "GeneLocationType" : { "type" : "object", "properties" : { "name" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/StatusType" } }, "type" : { "type" : "string", "xml" : { "attribute" : true } }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "GeneNameType" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } }, "type" : { "type" : "string", "xml" : { "attribute" : true } } } }, "GeneType" : { "required" : [ "name" ], "type" : "object", "properties" : { "name" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/GeneNameType" } } } }, "ImportedFromType" : { "required" : [ "dbReference" ], "type" : "object", "properties" : { "dbReference" : { "$ref" : "#/components/schemas/DbReferenceType" } } }, "InteractantType" : { "type" : "object", "properties" : { "id" : { "type" : "string" }, "label" : { "type" : "string" }, "dbReference" : { "$ref" : "#/components/schemas/DbReferenceType" }, "intactId" : { "type" : "string", "xml" : { "attribute" : true } } } }, "IsoformType" : { "required" : [ "id", "name", "sequence" ], "type" : "object", "properties" : { "id" : { "type" : "array", "items" : { "type" : "string" } }, "name" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Name" } }, "sequence" : { "$ref" : "#/components/schemas/Sequence" }, "text" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "KeywordType" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } }, "id" : { "type" : "string", "xml" : { "attribute" : true } } } }, "Kinetics" : { "type" : "object", "properties" : { "km" : { "type" : "array", "xml" : { "name" : "KM" }, "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "vmax" : { "type" : "array", "xml" : { "name" : "Vmax" }, "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "text" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "LigandPartType" : { "required" : [ "name" ], "type" : "object", "properties" : { "name" : { "type" : "string" }, "dbReference" : { "$ref" : "#/components/schemas/DbReferenceType" }, "label" : { "type" : "string" }, "note" : { "type" : "string" } } }, "LigandType" : { "required" : [ "name" ], "type" : "object", "properties" : { "name" : { "type" : "string" }, "dbReference" : { "$ref" : "#/components/schemas/DbReferenceType" }, "label" : { "type" : "string" }, "note" : { "type" : "string" } } }, "Lineage" : { "required" : [ "taxon" ], "type" : "object", "properties" : { "taxon" : { "type" : "array", "items" : { "type" : "string" } } } }, "Link" : { "type" : "object", "properties" : { "uri" : { "type" : "string", "xml" : { "attribute" : true } } } }, "LocationType" : { "type" : "object", "properties" : { "begin" : { "$ref" : "#/components/schemas/PositionType" }, "end" : { "$ref" : "#/components/schemas/PositionType" }, "position" : { "$ref" : "#/components/schemas/PositionType" }, "sequence" : { "type" : "string", "xml" : { "attribute" : true } } } }, "MoleculeType" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "id" : { "type" : "string", "xml" : { "attribute" : true } } } }, "NameListType" : { "type" : "object", "properties" : { "consortiumOrPerson" : { "type" : "array", "items" : { "type" : "object" } } } }, "OrganismNameType" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "type" : { "type" : "string", "xml" : { "attribute" : true } } } }, "OrganismType" : { "required" : [ "dbReference", "name" ], "type" : "object", "properties" : { "name" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/OrganismNameType" } }, "dbReference" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/DbReferenceType" } }, "lineage" : { "$ref" : "#/components/schemas/Lineage" }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "PhDependence" : { "type" : "object", "properties" : { "texts" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedValue" } } } }, "PhysiologicalReactionType" : { "required" : [ "dbReference" ], "type" : "object", "properties" : { "dbReference" : { "$ref" : "#/components/schemas/DbReferenceType" }, "direction" : { "type" : "string", "xml" : { "attribute" : true } }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "PositionType" : { "type" : "object", "properties" : { "position" : { "type" : "integer", "xml" : { "attribute" : true } }, "status" : { "type" : "string", "xml" : { "attribute" : true } }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "PropertyType" : { "type" : "object", "properties" : { "type" : { "type" : "string", "xml" : { "attribute" : true } }, "value" : { "type" : "string", "xml" : { "attribute" : true } } } }, "ProteinExistenceType" : { "type" : "object", "properties" : { "type" : { "type" : "string", "xml" : { "attribute" : true } } } }, "ProteinType" : { "type" : "object", "properties" : { "recommendedName" : { "$ref" : "#/components/schemas/RecommendedName" }, "alternativeName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/AlternativeName" } }, "submittedName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/SubmittedName" } }, "allergenName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "biotechName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "cdAntigenName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "innName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "domain" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Domain" } }, "component" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Component" } } } }, "ReactionType" : { "required" : [ "dbReference", "text" ], "type" : "object", "properties" : { "text" : { "type" : "string" }, "dbReference" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/DbReferenceType" } }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } } } }, "RecommendedName" : { "required" : [ "fullName" ], "type" : "object", "properties" : { "fullName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "shortName" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "ecNumber" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "RedoxPotential" : { "type" : "object", "properties" : { "texts" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedValue" } } } }, "ReferenceType" : { "required" : [ "citation", "scope" ], "type" : "object", "properties" : { "citation" : { "$ref" : "#/components/schemas/CitationType" }, "scope" : { "type" : "array", "items" : { "type" : "string" } }, "source" : { "$ref" : "#/components/schemas/SourceDataType" }, "evidence" : { "type" : "array", "items" : { "type" : "integer", "format" : "int32" } }, "key" : { "type" : "string", "xml" : { "attribute" : true } } } }, "SequenceType" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "length" : { "type" : "integer", "format" : "int32", "xml" : { "attribute" : true } }, "mass" : { "type" : "integer", "format" : "int32", "xml" : { "attribute" : true } }, "checksum" : { "type" : "string", "xml" : { "attribute" : true } }, "modified" : { "type" : "string", "format" : "date-time", "xml" : { "attribute" : true } }, "version" : { "type" : "integer", "format" : "int32", "xml" : { "attribute" : true } }, "precursor" : { "type" : "boolean", "xml" : { "attribute" : true } }, "fragment" : { "type" : "string", "xml" : { "attribute" : true } } } }, "SourceDataType" : { "type" : "object", "properties" : { "strainOrPlasmidOrTransposon" : { "type" : "array", "items" : { "type" : "object" } } } }, "SourceType" : { "type" : "object", "properties" : { "dbReference" : { "$ref" : "#/components/schemas/DbReferenceType" }, "ref" : { "type" : "integer", "xml" : { "attribute" : true } } } }, "StatusType" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "status" : { "type" : "string", "xml" : { "attribute" : true } } } }, "SubcellularLocationType" : { "required" : [ "location" ], "type" : "object", "properties" : { "location" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "topology" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } }, "orientation" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "SubmittedName" : { "required" : [ "fullName" ], "type" : "object", "properties" : { "fullName" : { "$ref" : "#/components/schemas/EvidencedStringType" }, "ecNumber" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedStringType" } } } }, "TemperatureDependence" : { "type" : "object", "properties" : { "texts" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedValue" } } } }, "StreamResult" : { "type" : "object", "properties" : { "results" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/UniProtKBEntry" } }, "error" : { "type" : "string" } } }, "Facet" : { "type" : "object", "properties" : { "label" : { "type" : "string" }, "name" : { "type" : "string" }, "allowMultipleSelection" : { "type" : "boolean" }, "values" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/FacetItem" } } } }, "FacetItem" : { "type" : "object", "properties" : { "label" : { "type" : "string" }, "value" : { "type" : "string" }, "count" : { "type" : "integer", "format" : "int64" } } }, "ProblemPair" : { "type" : "object", "properties" : { "code" : { "type" : "integer", "format" : "int32" }, "message" : { "type" : "string" } } }, "SearchResult" : { "type" : "object", "properties" : { "results" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/UniProtKBEntry" } }, "facets" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Facet" } }, "matchedFields" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/TermInfo" } }, "suggestions" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Suggestion" } }, "warnings" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/ProblemPair" } } } }, "Suggestion" : { "type" : "object", "properties" : { "query" : { "type" : "string" }, "hits" : { "type" : "integer", "format" : "int64" } } }, "TermInfo" : { "type" : "object", "properties" : { "name" : { "type" : "string" }, "hits" : { "type" : "integer", "format" : "int64" } } }, "AlternativeProductsComment" : { "type" : "object", "properties" : { "events" : { "type" : "array", "items" : { "type" : "string", "enum" : [ "Alternative promoter usage", "Alternative splicing", "Alternative initiation", "Ribosomal frameshifting" ] } }, "isoforms" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/APIsoform" } }, "note" : { "$ref" : "#/components/schemas/Note" } } }, "MichaelisConstant" : { "type" : "object", "properties" : { "constant" : { "type" : "number", "format" : "double" }, "unit" : { "type" : "string", "enum" : [ "M", "mM", "uM", "nM", "mg/mL", "mg/ml" ] }, "substrate" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "SequenceCautionComment" : { "type" : "object", "properties" : { "sequenceCautionType" : { "type" : "string", "enum" : [ "Frameshift", "Erroneous initiation", "Erroneous termination", "Erroneous gene model prediction", "Erroneous translation", "Miscellaneous discrepancy", "unknown" ] }, "note" : { "type" : "string" }, "sequence" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } }, "molecule" : { "type" : "string" } } }, "Interactant" : { "type" : "object", "properties" : { "chainId" : { "type" : "string" }, "intActId" : { "type" : "string" }, "geneName" : { "type" : "string" }, "uniProtKBAccession" : { "type" : "string" } } }, "MaximumVelocity" : { "type" : "object", "properties" : { "unit" : { "type" : "string" }, "velocity" : { "type" : "number", "format" : "double" }, "enzyme" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "IsoformName" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "Cofactor" : { "type" : "object", "properties" : { "cofactorCrossReference" : { "$ref" : "#/components/schemas/CrossReferenceCofactorDatabase" }, "name" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "SubcellularLocationValue" : { "type" : "object", "properties" : { "id" : { "type" : "string" }, "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "FreeTextComment" : { "type" : "object", "properties" : { "texts" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedValue" } }, "molecule" : { "type" : "string" } } }, "CatalyticActivityComment" : { "type" : "object", "properties" : { "physiologicalReactions" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/PhysiologicalReaction" } }, "reaction" : { "$ref" : "#/components/schemas/Reaction" }, "molecule" : { "type" : "string" } } }, "DiseaseComment" : { "type" : "object", "properties" : { "disease" : { "$ref" : "#/components/schemas/Disease" }, "note" : { "$ref" : "#/components/schemas/Note" }, "molecule" : { "type" : "string" } } }, "CrossReferenceReactionDatabase" : { "type" : "object", "properties" : { "database" : { "type" : "string", "enum" : [ "ChEBI", "Rhea" ] }, "properties" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Property" } }, "id" : { "type" : "string" } } }, "PhysiologicalReaction" : { "type" : "object", "properties" : { "reactionCrossReference" : { "$ref" : "#/components/schemas/CrossReferenceReactionDatabase" }, "directionType" : { "type" : "string", "enum" : [ "left-to-right", "right-to-left" ] }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "EvidencedValue" : { "type" : "object", "properties" : { "value" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "WebResourceComment" : { "type" : "object", "properties" : { "resourceUrl" : { "type" : "string" }, "ftp" : { "type" : "boolean" }, "note" : { "type" : "string" }, "resourceName" : { "type" : "string" }, "molecule" : { "type" : "string" } } }, "CofactorComment" : { "type" : "object", "properties" : { "cofactors" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Cofactor" } }, "note" : { "$ref" : "#/components/schemas/Note" }, "valid" : { "type" : "boolean" }, "molecule" : { "type" : "string" } } }, "RnaEditingComment" : { "type" : "object", "properties" : { "locationType" : { "type" : "string", "enum" : [ "Not_applicable", "Undetermined", "Unknown", "Known" ] }, "positions" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/RnaEdPosition" } }, "note" : { "$ref" : "#/components/schemas/Note" }, "molecule" : { "type" : "string" } } }, "InteractionComment" : { "type" : "object", "properties" : { "interactions" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Interaction" } } } }, "RnaEdPosition" : { "type" : "object", "properties" : { "position" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "Interaction" : { "type" : "object", "properties" : { "numberOfExperiments" : { "type" : "integer", "format" : "int32" }, "interactantOne" : { "$ref" : "#/components/schemas/Interactant" }, "organismDiffer" : { "type" : "boolean" }, "interactantTwo" : { "$ref" : "#/components/schemas/Interactant" } } }, "CrossReferenceCofactorDatabase" : { "type" : "object", "properties" : { "database" : { "type" : "string", "enum" : [ "ChEBI", "" ] }, "properties" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Property" } }, "id" : { "type" : "string" } } }, "BPCPComment" : { "type" : "object", "properties" : { "kineticParameters" : { "$ref" : "#/components/schemas/KineticParameters" }, "temperatureDependence" : { "$ref" : "#/components/schemas/TemperatureDependence" }, "absorption" : { "$ref" : "#/components/schemas/Absorption" }, "phDependence" : { "$ref" : "#/components/schemas/PhDependence" }, "redoxPotential" : { "$ref" : "#/components/schemas/RedoxPotential" }, "molecule" : { "type" : "string" } } }, "Reaction" : { "type" : "object", "properties" : { "reactionCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceReactionDatabase" } }, "ecNumber" : { "type" : "string" }, "name" : { "type" : "string" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } } } }, "SubcellularLocationComment" : { "type" : "object", "properties" : { "note" : { "$ref" : "#/components/schemas/Note" }, "subcellularLocations" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/SubcellularLocation" } }, "molecule" : { "type" : "string" } } }, "APIsoform" : { "type" : "object", "properties" : { "isoformIds" : { "type" : "array", "items" : { "type" : "string" } }, "sequenceIds" : { "type" : "array", "items" : { "type" : "string" } }, "isoformSequenceStatus" : { "type" : "string", "enum" : [ "Displayed", "External", "Not described", "Described" ] }, "note" : { "$ref" : "#/components/schemas/Note" }, "synonyms" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/IsoformName" } }, "name" : { "$ref" : "#/components/schemas/IsoformName" } } }, "KineticParameters" : { "type" : "object", "properties" : { "maximumVelocities" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/MaximumVelocity" } }, "michaelisConstants" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/MichaelisConstant" } }, "note" : { "$ref" : "#/components/schemas/Note" } } }, "Note" : { "type" : "object", "properties" : { "valid" : { "type" : "boolean" }, "texts" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/EvidencedValue" } } } }, "CrossReferenceDiseaseDatabase" : { "type" : "object", "properties" : { "database" : { "type" : "string", "enum" : [ "MIM", "" ] }, "properties" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Property" } }, "id" : { "type" : "string" } } }, "MassSpectrometryComment" : { "type" : "object", "properties" : { "molWeightError" : { "type" : "number", "format" : "float" }, "molWeight" : { "type" : "number", "format" : "float" }, "evidences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/Evidence" } }, "note" : { "type" : "string" }, "method" : { "type" : "string", "enum" : [ "Electrospray", "FAB", "LSI", "MALDI", "Plasma desorption", "SELDI", "API", "Unknown" ] }, "molecule" : { "type" : "string" } } }, "SubcellularLocation" : { "type" : "object", "properties" : { "orientation" : { "$ref" : "#/components/schemas/SubcellularLocationValue" }, "topology" : { "$ref" : "#/components/schemas/SubcellularLocationValue" }, "location" : { "$ref" : "#/components/schemas/SubcellularLocationValue" } } }, "Literature" : { "type" : "object", "properties" : { "literatureAbstract" : { "type" : "string" }, "completeAuthorList" : { "type" : "boolean" }, "pubmedId" : { "type" : "integer", "format" : "int64" }, "doiId" : { "type" : "string" }, "firstPage" : { "type" : "string" }, "lastPage" : { "type" : "string" }, "volume" : { "type" : "string" }, "journal" : { "type" : "string" }, "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "title" : { "type" : "string" }, "id" : { "type" : "string" } } }, "Submission" : { "type" : "object", "properties" : { "submissionDatabase" : { "type" : "string", "enum" : [ "PDB data bank", "PIR data bank", "Swiss-Prot", "UniProtKB", "EMBL/GenBank/DDBJ databases" ] }, "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "title" : { "type" : "string" }, "id" : { "type" : "string" } } }, "ElectronicArticle" : { "type" : "object", "properties" : { "journal" : { "type" : "string" }, "locator" : { "type" : "string" }, "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "title" : { "type" : "string" }, "id" : { "type" : "string" } } }, "Thesis" : { "type" : "object", "properties" : { "institute" : { "type" : "string" }, "address" : { "type" : "string" }, "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "title" : { "type" : "string" }, "id" : { "type" : "string" } } }, "Book" : { "type" : "object", "properties" : { "editors" : { "type" : "array", "items" : { "type" : "string" } }, "firstPage" : { "type" : "string" }, "lastPage" : { "type" : "string" }, "volume" : { "type" : "string" }, "publisher" : { "type" : "string" }, "bookName" : { "type" : "string" }, "address" : { "type" : "string" }, "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "title" : { "type" : "string" }, "id" : { "type" : "string" } } }, "Patent" : { "type" : "object", "properties" : { "patentNumber" : { "type" : "string" }, "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "title" : { "type" : "string" }, "id" : { "type" : "string" } } }, "JournalArticle" : { "type" : "object", "properties" : { "firstPage" : { "type" : "string" }, "lastPage" : { "type" : "string" }, "volume" : { "type" : "string" }, "journal" : { "type" : "string" }, "authoringGroups" : { "type" : "array", "items" : { "type" : "string" } }, "authors" : { "type" : "array", "items" : { "type" : "string" } }, "publicationDate" : { "type" : "string" }, "citationCrossReferences" : { "type" : "array", "items" : { "$ref" : "#/components/schemas/CrossReferenceCitationDatabase" } }, "title" : { "type" : "string" }, "id" : { "type" : "string" } } } } } }