{"entryType":"UniProtKB reviewed (Swiss-Prot)","primaryAccession":"Q7CP67","uniProtkbId":"YTJA_SALTY","entryAudit":{"firstPublicDate":"2006-10-31","lastAnnotationUpdateDate":"2025-06-18","lastSequenceUpdateDate":"2006-10-31","entryVersion":88,"sequenceVersion":2},"annotationScore":2.0,"organism":{"scientificName":"Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)","taxonId":99287,"lineage":["Bacteria","Pseudomonadati","Pseudomonadota","Gammaproteobacteria","Enterobacterales","Enterobacteriaceae","Salmonella"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"evidences":[{"evidenceCode":"ECO:0000255","source":"HAMAP-Rule","id":"MF_01361"}],"value":"UPF0391 membrane protein YtjA"}}},"genes":[{"geneName":{"evidences":[{"evidenceCode":"ECO:0000255","source":"HAMAP-Rule","id":"MF_01361"}],"value":"ytjA"},"orderedLocusNames":[{"value":"STM4562"}]}],"comments":[{"commentType":"SUBCELLULAR LOCATION","subcellularLocations":[{"location":{"evidences":[{"evidenceCode":"ECO:0000255","source":"HAMAP-Rule","id":"MF_01361"}],"value":"Cell membrane","id":"SL-0039"},"topology":{"evidences":[{"evidenceCode":"ECO:0000255","source":"HAMAP-Rule","id":"MF_01361"}],"value":"Multi-pass membrane protein","id":"SL-9909"}}]},{"texts":[{"evidences":[{"evidenceCode":"ECO:0000255","source":"HAMAP-Rule","id":"MF_01361"}],"value":"Belongs to the UPF0391 family"}],"commentType":"SIMILARITY"},{"commentType":"SEQUENCE CAUTION","sequenceCautionType":"Erroneous initiation","sequence":"AAL23377.1","evidences":[{"evidenceCode":"ECO:0000305"}]}],"features":[{"type":"Chain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":53,"modifier":"EXACT"}},"description":"UPF0391 membrane protein YtjA","featureId":"PRO_0000256787"},{"type":"Transmembrane","location":{"start":{"value":4,"modifier":"EXACT"},"end":{"value":24,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255","source":"HAMAP-Rule","id":"MF_01361"}]},{"type":"Transmembrane","location":{"start":{"value":30,"modifier":"EXACT"},"end":{"value":48,"modifier":"EXACT"}},"description":"Helical","evidences":[{"evidenceCode":"ECO:0000255","source":"HAMAP-Rule","id":"MF_01361"}]}],"keywords":[{"id":"KW-1003","category":"Cellular component","name":"Cell membrane"},{"id":"KW-0472","category":"Cellular component","name":"Membrane"},{"id":"KW-1185","category":"Technical term","name":"Reference proteome"},{"id":"KW-0812","category":"Domain","name":"Transmembrane"},{"id":"KW-1133","category":"Domain","name":"Transmembrane helix"}],"references":[{"referenceNumber":1,"citation":{"id":"11677609","citationType":"journal article","authors":["McClelland M.","Sanderson K.E.","Spieth J.","Clifton S.W.","Latreille P.","Courtney L.","Porwollik S.","Ali J.","Dante M.","Du F.","Hou S.","Layman D.","Leonard S.","Nguyen C.","Scott K.","Holmes A.","Grewal N.","Mulvaney E.","Ryan E.","Sun H.","Florea L.","Miller W.","Stoneking T.","Nhan M.","Waterston R.","Wilson R.K."],"citationCrossReferences":[{"database":"PubMed","id":"11677609"},{"database":"DOI","id":"10.1038/35101614"}],"title":"Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.","publicationDate":"2001","journal":"Nature","firstPage":"852","lastPage":"856","volume":"413"},"referencePositions":["NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]"],"referenceComments":[{"value":"LT2 / SGSC1412 / ATCC 700720","type":"STRAIN"}]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"AE006468","properties":[{"key":"ProteinId","value":"AAL23377.1"},{"key":"Status","value":"ALT_INIT"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"RefSeq","id":"NP_463418.1","properties":[{"key":"NucleotideSequenceId","value":"NC_003197.2"}]},{"database":"AlphaFoldDB","id":"Q7CP67","properties":[{"key":"Description","value":"-"}]},{"database":"STRING","id":"99287.STM4562","properties":[{"key":"Description","value":"-"}]},{"database":"PaxDb","id":"99287-STM4562","properties":[{"key":"Description","value":"-"}]},{"database":"GeneID","id":"1256088","properties":[{"key":"Description","value":"-"}]},{"database":"KEGG","id":"stm:STM4562","properties":[{"key":"Description","value":"-"}]},{"database":"PATRIC","id":"fig|99287.12.peg.4804","properties":[{"key":"GeneDesignation","value":"-"}]},{"database":"HOGENOM","id":"CLU_187346_2_0_6","properties":[{"key":"Description","value":"-"}]},{"database":"Proteomes","id":"UP000001014","properties":[{"key":"Component","value":"Chromosome"}]},{"database":"GO","id":"GO:0005886","properties":[{"key":"GoTerm","value":"C:plasma membrane"},{"key":"GoEvidenceType","value":"IEA:UniProtKB-SubCell"}]},{"database":"HAMAP","id":"MF_01361","properties":[{"key":"EntryName","value":"UPF0391"},{"key":"MatchStatus","value":"1"}]},{"database":"InterPro","id":"IPR009760","properties":[{"key":"EntryName","value":"DUF1328"}]},{"database":"NCBIfam","id":"NF010229","properties":[{"key":"EntryName","value":"PRK13682.1-4"},{"key":"MatchStatus","value":"1"}]},{"database":"NCBIfam","id":"NF010230","properties":[{"key":"EntryName","value":"PRK13682.1-5"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF07043","properties":[{"key":"EntryName","value":"DUF1328"},{"key":"MatchStatus","value":"1"}]},{"database":"PIRSF","id":"PIRSF036466","properties":[{"key":"EntryName","value":"UCP036466"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIVLFLVSLFMGRKRP","length":53,"molWeight":5522,"crc64":"E787FA90AE5AE636","md5":"23CC2F5F36BDA34637A222FA4C72D8C2"},"extraAttributes":{"countByCommentType":{"SUBCELLULAR LOCATION":1,"SIMILARITY":1,"SEQUENCE CAUTION":1},"countByFeatureType":{"Chain":1,"Transmembrane":2},"uniParcId":"UPI00004F8360"}}