{"entryType":"UniProtKB reviewed (Swiss-Prot)","primaryAccession":"P0DI19","secondaryAccessions":["O80873"],"uniProtkbId":"PHF5A_ARATH","entryAudit":{"firstPublicDate":"2012-05-16","lastAnnotationUpdateDate":"2026-09-02","lastSequenceUpdateDate":"2012-05-16","entryVersion":68,"sequenceVersion":1},"annotationScore":2.0,"organism":{"scientificName":"Arabidopsis thaliana","commonName":"Mouse-ear cress","taxonId":3702,"lineage":["Eukaryota","Viridiplantae","Streptophyta","Embryophyta","Tracheophyta","Spermatophyta","Magnoliopsida","eudicotyledons","Gunneridae","Pentapetalae","rosids","malvids","Brassicales","Brassicaceae","Camelineae","Arabidopsis"]},"proteinExistence":"3: Inferred from homology","proteinDescription":{"recommendedName":{"fullName":{"value":"PHD finger-like domain-containing protein 5A"}}},"genes":[{"orderedLocusNames":[{"value":"At2g30000"}],"orfNames":[{"value":"F23F1.8"}]}],"comments":[{"texts":[{"evidences":[{"evidenceCode":"ECO:0000305"}],"value":"Belongs to the PHF5 family"}],"commentType":"SIMILARITY"}],"features":[{"type":"Chain","location":{"start":{"value":1,"modifier":"EXACT"},"end":{"value":110,"modifier":"EXACT"}},"description":"PHD finger-like domain-containing protein 5A","featureId":"PRO_0000417452"}],"keywords":[{"id":"KW-1185","category":"Technical term","name":"Reference proteome"}],"references":[{"referenceNumber":1,"citation":{"id":"10617197","citationType":"journal article","authors":["Lin X.","Kaul S.","Rounsley S.D.","Shea T.P.","Benito M.-I.","Town C.D.","Fujii C.Y.","Mason T.M.","Bowman C.L.","Barnstead M.E.","Feldblyum T.V.","Buell C.R.","Ketchum K.A.","Lee J.J.","Ronning C.M.","Koo H.L.","Moffat K.S.","Cronin L.A.","Shen M.","Pai G.","Van Aken S.","Umayam L.","Tallon L.J.","Gill J.E.","Adams M.D.","Carrera A.J.","Creasy T.H.","Goodman H.M.","Somerville C.R.","Copenhaver G.P.","Preuss D.","Nierman W.C.","White O.","Eisen J.A.","Salzberg S.L.","Fraser C.M.","Venter J.C."],"citationCrossReferences":[{"database":"PubMed","id":"10617197"},{"database":"DOI","id":"10.1038/45471"}],"title":"Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.","publicationDate":"1999","journal":"Nature","firstPage":"761","lastPage":"768","volume":"402"},"referencePositions":["NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]"],"referenceComments":[{"value":"cv. Columbia","type":"STRAIN"}]},{"referenceNumber":2,"citation":{"id":"27862469","citationType":"journal article","authors":["Cheng C.Y.","Krishnakumar V.","Chan A.P.","Thibaud-Nissen F.","Schobel S.","Town C.D."],"citationCrossReferences":[{"database":"PubMed","id":"27862469"},{"database":"DOI","id":"10.1111/tpj.13415"}],"title":"Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.","publicationDate":"2017","journal":"Plant J.","firstPage":"789","lastPage":"804","volume":"89"},"referencePositions":["GENOME REANNOTATION"],"referenceComments":[{"value":"cv. Columbia","type":"STRAIN"}]},{"referenceNumber":3,"citation":{"id":"CI-CI4AM1G71UC0S","citationType":"submission","authoringGroup":["The Arabidopsis Information Resource (TAIR)"],"title":"Community-consensus reference genome of Arabidopsis thaliana Col-0.","publicationDate":"FEB-2026","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["GENOME REANNOTATION"],"referenceComments":[{"value":"cv. Columbia","type":"STRAIN"}]},{"referenceNumber":4,"citation":{"id":"11910074","citationType":"journal article","authors":["Seki M.","Narusaka M.","Kamiya A.","Ishida J.","Satou M.","Sakurai T.","Nakajima M.","Enju A.","Akiyama K.","Oono Y.","Muramatsu M.","Hayashizaki Y.","Kawai J.","Carninci P.","Itoh M.","Ishii Y.","Arakawa T.","Shibata K.","Shinagawa A.","Shinozaki K."],"citationCrossReferences":[{"database":"PubMed","id":"11910074"},{"database":"DOI","id":"10.1126/science.1071006"}],"title":"Functional annotation of a full-length Arabidopsis cDNA collection.","publicationDate":"2002","journal":"Science","firstPage":"141","lastPage":"145","volume":"296"},"referencePositions":["NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]"],"referenceComments":[{"value":"cv. Columbia","type":"STRAIN"}]},{"referenceNumber":5,"citation":{"id":"14593172","citationType":"journal article","authors":["Yamada K.","Lim J.","Dale J.M.","Chen H.","Shinn P.","Palm C.J.","Southwick A.M.","Wu H.C.","Kim C.J.","Nguyen M.","Pham P.K.","Cheuk R.F.","Karlin-Newmann G.","Liu S.X.","Lam B.","Sakano H.","Wu T.","Yu G.","Miranda M.","Quach H.L.","Tripp M.","Chang C.H.","Lee J.M.","Toriumi M.J.","Chan M.M.","Tang C.C.","Onodera C.S.","Deng J.M.","Akiyama K.","Ansari Y.","Arakawa T.","Banh J.","Banno F.","Bowser L.","Brooks S.Y.","Carninci P.","Chao Q.","Choy N.","Enju A.","Goldsmith A.D.","Gurjal M.","Hansen N.F.","Hayashizaki Y.","Johnson-Hopson C.","Hsuan V.W.","Iida K.","Karnes M.","Khan S.","Koesema E.","Ishida J.","Jiang P.X.","Jones T.","Kawai J.","Kamiya A.","Meyers C.","Nakajima M.","Narusaka M.","Seki M.","Sakurai T.","Satou M.","Tamse R.","Vaysberg M.","Wallender E.K.","Wong C.","Yamamura Y.","Yuan S.","Shinozaki K.","Davis R.W.","Theologis A.","Ecker J.R."],"citationCrossReferences":[{"database":"PubMed","id":"14593172"},{"database":"DOI","id":"10.1126/science.1088305"}],"title":"Empirical analysis of transcriptional activity in the Arabidopsis genome.","publicationDate":"2003","journal":"Science","firstPage":"842","lastPage":"846","volume":"302"},"referencePositions":["NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]"],"referenceComments":[{"value":"cv. Columbia","type":"STRAIN"}]},{"referenceNumber":6,"citation":{"id":"CI-3TH3AFLAVIRO9","citationType":"submission","authors":["Brover V.V.","Troukhan M.E.","Alexandrov N.A.","Lu Y.-P.","Flavell R.B.","Feldmann K.A."],"title":"Full-length cDNA from Arabidopsis thaliana.","publicationDate":"MAR-2002","submissionDatabase":"EMBL/GenBank/DDBJ databases"},"referencePositions":["NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]"]}],"uniProtKBCrossReferences":[{"database":"EMBL","id":"AC004680","properties":[{"key":"ProteinId","value":"AAC31852.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"EMBL","id":"CP002685","properties":[{"key":"ProteinId","value":"AEC08334.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"EMBL","id":"OZ408684","properties":[{"key":"ProteinId","value":"CAO7036858.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"Genomic_DNA"}]},{"database":"EMBL","id":"AK118482","properties":[{"key":"ProteinId","value":"BAC43086.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"EMBL","id":"BT004694","properties":[{"key":"ProteinId","value":"AAO42940.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"EMBL","id":"AY087478","properties":[{"key":"ProteinId","value":"AAM65022.1"},{"key":"Status","value":"-"},{"key":"MoleculeType","value":"mRNA"}]},{"database":"PIR","id":"T02485","properties":[{"key":"EntryName","value":"T02485"}]},{"database":"RefSeq","id":"NP_565691.1","properties":[{"key":"NucleotideSequenceId","value":"NM_128555.4"}]},{"database":"AlphaFoldDB","id":"P0DI19","properties":[{"key":"Description","value":"-"}]},{"database":"SMR","id":"P0DI19","properties":[{"key":"Description","value":"-"}]},{"database":"BioGRID","id":"22469","properties":[{"key":"Interactions","value":"5"}]},{"database":"BioGRID","id":"2901","properties":[{"key":"Interactions","value":"5"}]},{"database":"FunCoup","id":"P0DI19","properties":[{"key":"Number of interactors","value":"3479"}]},{"database":"STRING","id":"3702.P0DI19","properties":[{"key":"Description","value":"-"}]},{"database":"PaxDb","id":"3702-P0DI19","properties":[{"key":"Description","value":"-"}]},{"database":"GeneID","id":"817551","properties":[{"key":"Description","value":"-"}]},{"database":"KEGG","id":"ath:AT1G07170","properties":[{"key":"Description","value":"-"}]},{"database":"KEGG","id":"ath:AT2G30000","properties":[{"key":"Description","value":"-"}]},{"database":"Araport","id":"AT2G30000","properties":[{"key":"Description","value":"-"}]},{"database":"TAIR","id":"AT2G30000","properties":[{"key":"GeneName","value":"-"}]},{"database":"eggNOG","id":"KOG1705","properties":[{"key":"ToxonomicScope","value":"Eukaryota"}]},{"database":"HOGENOM","id":"CLU_110369_2_0_1","properties":[{"key":"Description","value":"-"}]},{"database":"InParanoid","id":"P0DI19","properties":[{"key":"Description","value":"-"}]},{"database":"OMA","id":"AYYCWEC","properties":[{"key":"Fingerprint","value":"-"}]},{"database":"OrthoDB","id":"10248186at2759","properties":[{"key":"Description","value":"-"}]},{"database":"PhylomeDB","id":"P0DI19","properties":[{"key":"Description","value":"-"}]},{"database":"PRO","id":"PR:P0DI19","properties":[{"key":"Description","value":"-"}]},{"database":"Proteomes","id":"UP000006548","properties":[{"key":"Component","value":"Chromosome 2"}]},{"database":"ExpressionAtlas","id":"P0DI19","properties":[{"key":"ExpressionPatterns","value":"baseline and differential"}]},{"database":"GO","id":"GO:0071013","properties":[{"key":"GoTerm","value":"C:catalytic step 2 spliceosome"},{"key":"GoEvidenceType","value":"IBA:GO_Central"}]},{"database":"GO","id":"GO:0005634","properties":[{"key":"GoTerm","value":"C:nucleus"},{"key":"GoEvidenceType","value":"ISM:TAIR"}]},{"database":"GO","id":"GO:0071011","properties":[{"key":"GoTerm","value":"C:precatalytic spliceosome"},{"key":"GoEvidenceType","value":"IBA:GO_Central"}]},{"database":"GO","id":"GO:0005686","properties":[{"key":"GoTerm","value":"C:U2 snRNP"},{"key":"GoEvidenceType","value":"IBA:GO_Central"}]},{"database":"GO","id":"GO:0000398","properties":[{"key":"GoTerm","value":"P:mRNA splicing, via spliceosome"},{"key":"GoEvidenceType","value":"IBA:GO_Central"}]},{"database":"InterPro","id":"IPR005345","properties":[{"key":"EntryName","value":"PHF5"}]},{"database":"PANTHER","id":"PTHR13120","properties":[{"key":"EntryName","value":"PHD FINGER-LIKE DOMAIN-CONTAINING PROTEIN 5A"},{"key":"MatchStatus","value":"1"}]},{"database":"Pfam","id":"PF03660","properties":[{"key":"EntryName","value":"PHF5"},{"key":"MatchStatus","value":"1"}]},{"database":"PIRSF","id":"PIRSF016468","properties":[{"key":"EntryName","value":"PHF5"},{"key":"MatchStatus","value":"1"}]}],"sequence":{"value":"MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR","length":110,"molWeight":12429,"crc64":"5499867155B48E28","md5":"4C9B398E2998C73F76DADBF59A9D909B"},"extraAttributes":{"countByCommentType":{"SIMILARITY":1},"countByFeatureType":{"Chain":1},"uniParcId":"UPI0000001436"}}