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<entry dataset="Swiss-Prot" created="2005-04-26" modified="2026-09-02" version="117" xmlns="http://uniprot.org/uniprot">
  <accession>Q8G3T9</accession>
  <name>TYSY_BIFLO</name>
  <protein>
    <recommendedName>
      <fullName evidence="1">Thymidylate synthase</fullName>
      <shortName evidence="1">TS</shortName>
      <shortName evidence="1">TSase</shortName>
      <ecNumber evidence="1">2.1.1.45</ecNumber>
    </recommendedName>
  </protein>
  <gene>
    <name evidence="1" type="primary">thyA</name>
    <name type="ordered locus">BL1665</name>
  </gene>
  <organism>
    <name type="scientific">Bifidobacterium longum (strain NCC 2705)</name>
    <dbReference type="NCBI Taxonomy" id="206672"/>
    <lineage>
      <taxon>Bacteria</taxon>
      <taxon>Bacillati</taxon>
      <taxon>Actinomycetota</taxon>
      <taxon>Actinomycetes</taxon>
      <taxon>Bifidobacteriales</taxon>
      <taxon>Bifidobacteriaceae</taxon>
      <taxon>Bifidobacterium</taxon>
    </lineage>
  </organism>
  <reference key="1">
    <citation type="journal article" date="2002" name="Proc. Natl. Acad. Sci. U.S.A." volume="99" first="14422" last="14427">
      <title>The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.</title>
      <authorList>
        <person name="Schell M.A."/>
        <person name="Karmirantzou M."/>
        <person name="Snel B."/>
        <person name="Vilanova D."/>
        <person name="Berger B."/>
        <person name="Pessi G."/>
        <person name="Zwahlen M.-C."/>
        <person name="Desiere F."/>
        <person name="Bork P."/>
        <person name="Delley M."/>
        <person name="Pridmore R.D."/>
        <person name="Arigoni F."/>
      </authorList>
      <dbReference type="PubMed" id="12381787"/>
      <dbReference type="DOI" id="10.1073/pnas.212527599"/>
    </citation>
    <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
    <source>
      <strain>NCC 2705</strain>
    </source>
  </reference>
  <comment type="function">
    <text evidence="1">Catalyzes the reductive methylation of 2'-deoxyuridine-5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.</text>
  </comment>
  <comment type="catalytic activity">
    <reaction evidence="1">
      <text>dUMP + (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate = 7,8-dihydrofolate + dTMP</text>
      <dbReference type="Rhea" id="RHEA:12104"/>
      <dbReference type="ChEBI" id="CHEBI:15636"/>
      <dbReference type="ChEBI" id="CHEBI:57451"/>
      <dbReference type="ChEBI" id="CHEBI:63528"/>
      <dbReference type="ChEBI" id="CHEBI:246422"/>
      <dbReference type="EC" id="2.1.1.45"/>
    </reaction>
  </comment>
  <comment type="pathway">
    <text evidence="1">Pyrimidine metabolism; dTTP biosynthesis.</text>
  </comment>
  <comment type="subunit">
    <text evidence="1">Homodimer.</text>
  </comment>
  <comment type="subcellular location">
    <subcellularLocation>
      <location evidence="1">Cytoplasm</location>
    </subcellularLocation>
  </comment>
  <comment type="similarity">
    <text evidence="1">Belongs to the thymidylate synthase family. Bacterial-type ThyA subfamily.</text>
  </comment>
  <dbReference type="EC" id="2.1.1.45" evidence="1"/>
  <dbReference type="EMBL" id="AE014295">
    <property type="protein sequence ID" value="AAN25452.1"/>
    <property type="molecule type" value="Genomic_DNA"/>
  </dbReference>
  <dbReference type="RefSeq" id="WP_007052359.1">
    <property type="nucleotide sequence ID" value="NC_004307.2"/>
  </dbReference>
  <dbReference type="AlphaFoldDB" id="Q8G3T9"/>
  <dbReference type="SMR" id="Q8G3T9"/>
  <dbReference type="STRING" id="206672.BL1665"/>
  <dbReference type="PaxDb" id="206672-BL1665"/>
  <dbReference type="EnsemblBacteria" id="AAN25452">
    <property type="protein sequence ID" value="AAN25452"/>
    <property type="gene ID" value="BL1665"/>
  </dbReference>
  <dbReference type="GeneID" id="69578815"/>
  <dbReference type="KEGG" id="blo:BL1665"/>
  <dbReference type="PATRIC" id="fig|206672.9.peg.1720"/>
  <dbReference type="HOGENOM" id="CLU_021669_0_0_11"/>
  <dbReference type="OrthoDB" id="9774633at2"/>
  <dbReference type="PhylomeDB" id="Q8G3T9"/>
  <dbReference type="UniPathway" id="UPA00575"/>
  <dbReference type="Proteomes" id="UP000000439">
    <property type="component" value="Chromosome"/>
  </dbReference>
  <dbReference type="GO" id="GO:0005829">
    <property type="term" value="C:cytosol"/>
    <property type="evidence" value="ECO:0000501"/>
    <property type="project" value="TreeGrafter"/>
  </dbReference>
  <dbReference type="GO" id="GO:0004799">
    <property type="term" value="F:thymidylate synthase activity"/>
    <property type="evidence" value="ECO:0000501"/>
    <property type="project" value="UniProtKB-UniRule"/>
  </dbReference>
  <dbReference type="GO" id="GO:0006231">
    <property type="term" value="P:dTMP biosynthetic process"/>
    <property type="evidence" value="ECO:0000501"/>
    <property type="project" value="UniProtKB-UniRule"/>
  </dbReference>
  <dbReference type="GO" id="GO:0006235">
    <property type="term" value="P:dTTP biosynthetic process"/>
    <property type="evidence" value="ECO:0000501"/>
    <property type="project" value="UniProtKB-UniRule"/>
  </dbReference>
  <dbReference type="CDD" id="cd00351">
    <property type="entry name" value="TS_Pyrimidine_HMase"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="FunFam" id="3.30.572.10:FF:000013">
    <property type="entry name" value="Thymidylate synthase"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="Gene3D" id="3.30.572.10">
    <property type="entry name" value="Thymidylate synthase/dCMP hydroxymethylase domain"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="HAMAP" id="MF_00008">
    <property type="entry name" value="Thymidy_synth_bact"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="InterPro" id="IPR045097">
    <property type="entry name" value="Thymidate_synth/dCMP_Mease"/>
  </dbReference>
  <dbReference type="InterPro" id="IPR023451">
    <property type="entry name" value="Thymidate_synth/dCMP_Mease_dom"/>
  </dbReference>
  <dbReference type="InterPro" id="IPR036926">
    <property type="entry name" value="Thymidate_synth/dCMP_Mease_sf"/>
  </dbReference>
  <dbReference type="InterPro" id="IPR000398">
    <property type="entry name" value="Thymidylate_synthase"/>
  </dbReference>
  <dbReference type="InterPro" id="IPR020940">
    <property type="entry name" value="Thymidylate_synthase_AS"/>
  </dbReference>
  <dbReference type="NCBIfam" id="NF002497">
    <property type="entry name" value="PRK01827.1-3"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="NCBIfam" id="NF002499">
    <property type="entry name" value="PRK01827.1-5"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="NCBIfam" id="TIGR03284">
    <property type="entry name" value="thym_sym"/>
    <property type="match status" value="2"/>
  </dbReference>
  <dbReference type="PANTHER" id="PTHR11548">
    <property type="entry name" value="THYMIDYLATE SYNTHASE 1"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="PANTHER" id="PTHR11548:SF1">
    <property type="entry name" value="THYMIDYLATE SYNTHASE 1"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="Pfam" id="PF00303">
    <property type="entry name" value="Thymidylat_synt"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="PRINTS" id="PR00108">
    <property type="entry name" value="THYMDSNTHASE"/>
  </dbReference>
  <dbReference type="SUPFAM" id="SSF55831">
    <property type="entry name" value="Thymidylate synthase/dCMP hydroxymethylase"/>
    <property type="match status" value="1"/>
  </dbReference>
  <dbReference type="PROSITE" id="PS00091">
    <property type="entry name" value="THYMIDYLATE_SYNTHASE"/>
    <property type="match status" value="1"/>
  </dbReference>
  <proteinExistence type="inferred from homology"/>
  <keyword id="KW-0963">Cytoplasm</keyword>
  <keyword id="KW-0489">Methyltransferase</keyword>
  <keyword id="KW-0545">Nucleotide biosynthesis</keyword>
  <keyword id="KW-1185">Reference proteome</keyword>
  <keyword id="KW-0808">Transferase</keyword>
  <feature type="chain" id="PRO_0000140937" description="Thymidylate synthase">
    <location>
      <begin position="1"/>
      <end position="266"/>
    </location>
  </feature>
  <feature type="active site" description="Nucleophile" evidence="1">
    <location>
      <position position="149"/>
    </location>
  </feature>
  <feature type="binding site" description="in other chain" evidence="1">
    <location>
      <position position="20"/>
    </location>
    <ligand>
      <name>dUMP</name>
      <dbReference type="ChEBI" id="CHEBI:246422"/>
      <note>ligand shared between dimeric partners</note>
    </ligand>
  </feature>
  <feature type="binding site" evidence="1">
    <location>
      <begin position="129"/>
      <end position="130"/>
    </location>
    <ligand>
      <name>dUMP</name>
      <dbReference type="ChEBI" id="CHEBI:246422"/>
      <note>ligand shared between dimeric partners</note>
    </ligand>
  </feature>
  <feature type="binding site" description="in other chain" evidence="1">
    <location>
      <begin position="169"/>
      <end position="172"/>
    </location>
    <ligand>
      <name>dUMP</name>
      <dbReference type="ChEBI" id="CHEBI:246422"/>
      <note>ligand shared between dimeric partners</note>
    </ligand>
  </feature>
  <feature type="binding site" evidence="1">
    <location>
      <position position="172"/>
    </location>
    <ligand>
      <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
      <dbReference type="ChEBI" id="CHEBI:15636"/>
    </ligand>
  </feature>
  <feature type="binding site" description="in other chain" evidence="1">
    <location>
      <position position="180"/>
    </location>
    <ligand>
      <name>dUMP</name>
      <dbReference type="ChEBI" id="CHEBI:246422"/>
      <note>ligand shared between dimeric partners</note>
    </ligand>
  </feature>
  <feature type="binding site" description="in other chain" evidence="1">
    <location>
      <begin position="210"/>
      <end position="212"/>
    </location>
    <ligand>
      <name>dUMP</name>
      <dbReference type="ChEBI" id="CHEBI:246422"/>
      <note>ligand shared between dimeric partners</note>
    </ligand>
  </feature>
  <feature type="binding site" evidence="1">
    <location>
      <position position="265"/>
    </location>
    <ligand>
      <name>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate</name>
      <dbReference type="ChEBI" id="CHEBI:15636"/>
    </ligand>
  </feature>
  <evidence type="ECO:0000255" key="1">
    <source>
      <dbReference type="HAMAP-Rule" id="MF_00008"/>
    </source>
  </evidence>
  <sequence length="266" mass="30689" checksum="E8BDC2C4B8B9DE70" modified="2003-03-01" version="1">MPYEDLVRKILTEGTLKSDRTGTGTISLFGQQMRFDLSKYFPLLTTKTVFFKGLAYELLWFLKGSSNINWLLEHNVHIWDEWADENGDLGPVYGVQWRSWPAPTPEDPNRTIDQISNVLDLIKHHPDSRRMIVSAWNPAEVEKMALPPCHALFQFYVADDKLSCQLYQRSCDMFLGVPFNIASYSLLTMMMAQQAGLKPGEFVWTGGDCHVYDNHVDQFLEQLGRKPYPYPTIEIRKADSLFDYQYEDFKVVGYQHHPTIKAPVAV</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms Distributed under the Creative Commons Attribution (CC BY 4.0) License
</copyright>
</uniprot>