ID OLFM4_HUMAN Reviewed; 510 AA. AC Q6UX06; O95362; Q5VWG0; Q86T22; DT 13-NOV-2007, integrated into UniProtKB/Swiss-Prot. DT 12-APR-2005, sequence version 1. DT 02-SEP-2026, entry version 165. DE RecName: Full=Olfactomedin-4; DE Short=OLM4; DE AltName: Full=Antiapoptotic protein GW112; DE AltName: Full=G-CSF-stimulated clone 1 protein; DE Short=hGC-1; DE AltName: Full=hOLfD; DE Flags: Precursor; GN Name=OLFM4; Synonyms=GW112; ORFNames=UNQ362/PRO698; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RX PubMed=12975309; DOI=10.1101/gr.1293003; RA Clark H.F., Gurney A.L., Abaya E., Baker K., Baldwin D.T., Brush J., RA Chen J., Chow B., Chui C., Crowley C., Currell B., Deuel B., Dowd P., RA Eaton D., Foster J.S., Grimaldi C., Gu Q., Hass P.E., Heldens S., Huang A., RA Kim H.S., Klimowski L., Jin Y., Johnson S., Lee J., Lewis L., Liao D., RA Mark M.R., Robbie E., Sanchez C., Schoenfeld J., Seshagiri S., Simmons L., RA Singh J., Smith V., Stinson J., Vagts A., Vandlen R.L., Watanabe C., RA Wieand D., Woods K., Xie M.-H., Yansura D.G., Yi S., Yu G., Yuan J., RA Zhang M., Zhang Z., Goddard A.D., Wood W.I., Godowski P.J., Gray A.M.; RT "The secreted protein discovery initiative (SPDI), a large-scale effort to RT identify novel human secreted and transmembrane proteins: a bioinformatics RT assessment."; RL Genome Res. 13:2265-2270(2003). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=15057823; DOI=10.1038/nature02379; RA Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., RA Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., RA Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., RA Ambrose K.D., Andrews D.T., Ashwell R.I.S., Babbage A.K., Bagguley C.L., RA Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., RA Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., RA Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., RA Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., RA Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., RA Frankish A.G., Frankland J., French L., Garner P., Garnett J., RA Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., RA Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., RA Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., RA Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., RA Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., RA Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., RA Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., RA Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., RA Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., RA Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., RA Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., RA Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., RA Rogers J., Ross M.T.; RT "The DNA sequence and analysis of human chromosome 13."; RL Nature 428:522-528(2004). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RA Mural R.J., Istrail S., Sutton G.G., Florea L., Halpern A.L., Mobarry C.M., RA Lippert R., Walenz B., Shatkay H., Dew I., Miller J.R., Flanigan M.J., RA Edwards N.J., Bolanos R., Fasulo D., Halldorsson B.V., Hannenhalli S., RA Turner R., Yooseph S., Lu F., Nusskern D.R., Shue B.C., Zheng X.H., RA Zhong F., Delcher A.L., Huson D.H., Kravitz S.A., Mouchard L., Reinert K., RA Remington K.A., Clark A.G., Waterman M.S., Eichler E.E., Adams M.D., RA Hunkapiller M.W., Myers E.W., Venter J.C.; RL Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases. RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Colon, and PNS; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP NUCLEOTIDE SEQUENCE [MRNA] OF 4-510, TISSUE SPECIFICITY, AND PTM. RX PubMed=11867215; DOI=10.1016/s0378-1119(01)00763-6; RA Zhang J., Liu W.-L., Tang D.C., Chen L., Wang M., Pack S.D., Zhuang Z., RA Rodgers G.P.; RT "Identification and characterization of a novel member of olfactomedin- RT related protein family, hGC-1, expressed during myeloid lineage RT development."; RL Gene 283:83-93(2002). RN [6] RP SUBCELLULAR LOCATION, AND INTERACTION WITH NDUFA13. RX PubMed=15059901; DOI=10.1158/0008-5472.can-03-3443; RA Zhang X., Huang Q., Yang Z., Li Y., Li C.-Y.; RT "GW112, a novel antiapoptotic protein that promotes tumor growth."; RL Cancer Res. 64:2474-2481(2004). RN [7] RP FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, DOMAIN, SUBUNIT, RP INTERACTION WITH CELL SURFACE LECTINS AND CADHERIN, AND MUTAGENESIS OF RP CYS-83; CYS-85; CYS-226; CYS-246 AND CYS-437. RX PubMed=16566923; DOI=10.1016/j.yexcr.2006.02.011; RA Liu W., Chen L., Zhu J., Rodgers G.P.; RT "The glycoprotein hGC-1 binds to cadherin and lectins."; RL Exp. Cell Res. 312:1785-1797(2006). RN [8] RP FUNCTION, TISSUE SPECIFICITY, AND DEVELOPMENTAL STAGE. RX PubMed=17270022; DOI=10.1111/j.1349-7006.2007.00397.x; RA Kobayashi D., Koshida S., Moriai R., Tsuji N., Watanabe N.; RT "Olfactomedin 4 promotes S-phase transition in proliferation of pancreatic RT cancer cells."; RL Cancer Sci. 98:334-340(2007). RN [9] RP FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY, AND INDUCTION. RX PubMed=20724538; DOI=10.1182/blood-2009-10-246439; RA Liu W., Lee H.W., Liu Y., Wang R., Rodgers G.P.; RT "Olfactomedin 4 is a novel target gene of retinoic acids and 5-aza-2'- RT deoxycytidine involved in human myeloid leukemia cell growth, RT differentiation, and apoptosis."; RL Blood 116:4938-4947(2010). CC -!- FUNCTION: May promote proliferation of pancreatic cancer cells by CC favoring the transition from the S to G2/M phase. In myeloid leukemic CC cell lines, inhibits cell growth and induces cell differentiation and CC apoptosis. May play a role in the inhibition of EIF4EBP1 CC phosphorylation/deactivation. Facilitates cell adhesion, most probably CC through interaction with cell surface lectins and cadherin. CC {ECO:0000269|PubMed:16566923, ECO:0000269|PubMed:17270022, CC ECO:0000269|PubMed:20724538}. CC -!- SUBUNIT: Homomultimer; disulfide-linked. Interacts with NDUFA13. CC Interacts with cell surface lectins (locutions ricinus communis CC agglutinin I, concanavalin-A and wheat germ agglutinin) and cadherin. CC {ECO:0000269|PubMed:15059901, ECO:0000269|PubMed:16566923}. CC -!- INTERACTION: CC Q6UX06; P41181: AQP2; NbExp=3; IntAct=EBI-2804156, EBI-12701138; CC Q6UX06; Q92482: AQP3; NbExp=3; IntAct=EBI-2804156, EBI-2808854; CC Q6UX06; J3KQ12: BSCL2; NbExp=3; IntAct=EBI-2804156, EBI-11532900; CC Q6UX06; O95471: CLDN7; NbExp=3; IntAct=EBI-2804156, EBI-740744; CC Q6UX06; Q6ZS10: CLEC17A; NbExp=3; IntAct=EBI-2804156, EBI-11977093; CC Q6UX06; Q9BXN2-6: CLEC7A; NbExp=3; IntAct=EBI-2804156, EBI-11989440; CC Q6UX06; Q9BQT9: CLSTN3; NbExp=3; IntAct=EBI-2804156, EBI-11291074; CC Q6UX06; Q9HBJ8: CLTRN; NbExp=3; IntAct=EBI-2804156, EBI-3924906; CC Q6UX06; Q96BA8: CREB3L1; NbExp=3; IntAct=EBI-2804156, EBI-6942903; CC Q6UX06; O14944: EREG; NbExp=3; IntAct=EBI-2804156, EBI-17272224; CC Q6UX06; Q5JX71: FAM209A; NbExp=3; IntAct=EBI-2804156, EBI-18304435; CC Q6UX06; Q8TBE3: FNDC9; NbExp=3; IntAct=EBI-2804156, EBI-12142257; CC Q6UX06; Q14626: IL11RA; NbExp=3; IntAct=EBI-2804156, EBI-13638581; CC Q6UX06; Q9NQX7-3: ITM2C; NbExp=3; IntAct=EBI-2804156, EBI-12811565; CC Q6UX06; Q8N6L0: KASH5; NbExp=3; IntAct=EBI-2804156, EBI-749265; CC Q6UX06; P43628: KIR2DL3; NbExp=3; IntAct=EBI-2804156, EBI-8632435; CC Q6UX06; Q8N743: KIR3DL3; NbExp=3; IntAct=EBI-2804156, EBI-17272405; CC Q6UX06; Q5T700: LDLRAD1; NbExp=7; IntAct=EBI-2804156, EBI-10173166; CC Q6UX06; A8MZ59: LEUTX; NbExp=3; IntAct=EBI-2804156, EBI-17490413; CC Q6UX06; Q6ZUX7: LHFPL2; NbExp=3; IntAct=EBI-2804156, EBI-17566767; CC Q6UX06; Q9Y239: NOD1; NbExp=2; IntAct=EBI-2804156, EBI-1051262; CC Q6UX06; Q9HC29: NOD2; NbExp=2; IntAct=EBI-2804156, EBI-7445625; CC Q6UX06; P15151: PVR; NbExp=3; IntAct=EBI-2804156, EBI-3919694; CC Q6UX06; Q6DKI7: PVRIG; NbExp=3; IntAct=EBI-2804156, EBI-17964309; CC Q6UX06; Q9NXS2-3: QPCTL; NbExp=3; IntAct=EBI-2804156, EBI-13336719; CC Q6UX06; P54219-3: SLC18A1; NbExp=3; IntAct=EBI-2804156, EBI-17595455; CC Q6UX06; A1A5C7-2: SLC22A23; NbExp=3; IntAct=EBI-2804156, EBI-12081840; CC Q6UX06; Q96L08: SUSD3; NbExp=3; IntAct=EBI-2804156, EBI-18194029; CC Q6UX06; Q8N205: SYNE4; NbExp=3; IntAct=EBI-2804156, EBI-7131783; CC Q6UX06; Q9UP52: TFR2; NbExp=3; IntAct=EBI-2804156, EBI-3934135; CC Q6UX06; Q8N3G9: TMEM130; NbExp=3; IntAct=EBI-2804156, EBI-19763514; CC Q6UX06; O14788: TNFSF11; NbExp=3; IntAct=EBI-2804156, EBI-7404021; CC Q6UX06; O43557: TNFSF14; NbExp=3; IntAct=EBI-2804156, EBI-524131; CC Q6UX06; Q8WUV1: TSPAN18; NbExp=3; IntAct=EBI-2804156, EBI-17670824; CC -!- SUBCELLULAR LOCATION: Secreted, extracellular space. Mitochondrion. CC Note=Subcellular location is not clearly defined: has been shown to be CC secreted (PubMed:16566923), but also in the mitochondrion CC (PubMed:15059901, PubMed:20724538), cytoplasm and plasma membrane CC (PubMed:20724538) and in the nucleus (PubMed:15059901). CC {ECO:0000269|PubMed:15059901, ECO:0000269|PubMed:16566923, CC ECO:0000269|PubMed:20724538}. CC -!- TISSUE SPECIFICITY: Expressed during myeloid lineage development. Much CC higher expression in bone marrow neutrophils than in peripheral blood CC neutrophils (at protein level). Strongly expressed in the prostate, CC small intestine and colon and moderately expressed in the bone marrow CC and stomach. Overexpressed in some pancreatic cancer tissues. CC {ECO:0000269|PubMed:11867215, ECO:0000269|PubMed:16566923, CC ECO:0000269|PubMed:17270022, ECO:0000269|PubMed:20724538}. CC -!- DEVELOPMENTAL STAGE: Elevated expression during the early S phase of CC the cell cycle, followed by a gradual decrease during late S phase. CC {ECO:0000269|PubMed:17270022}. CC -!- INDUCTION: By retinoic acid. This induction requires functional NFKB CC pathway. {ECO:0000269|PubMed:20724538}. CC -!- DOMAIN: The olfactomedin-like domain is involved in the interaction CC with cadherin. {ECO:0000269|PubMed:16566923}. CC -!- PTM: N-glycosylated. CC -!- SEQUENCE CAUTION: CC Sequence=AAC72970.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305}; CC Sequence=AAC72970.1; Type=Frameshift; Evidence={ECO:0000305}; CC -!- WEB RESOURCE: Name=Atlas of Genetics and Cytogenetics in Oncology and CC Haematology; CC URL="https://atlasgeneticsoncology.org/gene/49730/OLFM4"; CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AY358567; AAQ88930.1; -; mRNA. DR EMBL; AL390736; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; CH471124; EAW52052.1; -; Genomic_DNA. DR EMBL; BC047740; AAH47740.1; -; mRNA. DR EMBL; BC117329; AAI17330.1; -; mRNA. DR EMBL; AF097021; AAC72970.1; ALT_SEQ; mRNA. DR CCDS; CCDS9440.1; -. DR RefSeq; NP_006409.3; NM_006418.5. DR AlphaFoldDB; Q6UX06; -. DR SMR; Q6UX06; -. DR BioGRID; 115813; 79. DR DIP; DIP-59533N; -. DR FunCoup; Q6UX06; 10. DR IntAct; Q6UX06; 92. DR MINT; Q6UX06; -. DR STRING; 9606.ENSP00000219022; -. DR GlyConnect; Q6UX06; 12 N-Linked glycans (6 sites). DR GlyCosmos; Q6UX06; 6 sites, 11 glycans. DR GlyGen; Q6UX06; 8 sites, 56 N-linked glycans (6 sites). DR iPTMnet; Q6UX06; -. DR PhosphoSitePlus; Q6UX06; -. DR BioMuta; OLFM4; -. DR DMDM; 74749412; -. DR CPTAC; CPTAC-1528; -. DR CPTAC; CPTAC-1529; -. DR jPOST; Q6UX06; -. DR MassIVE; Q6UX06; -. DR PaxDb; 9606-ENSP00000219022; -. DR PeptideAtlas; Q6UX06; -. DR PRIDE; Q6UX06; -. DR ProteomicsDB; 67547; -. DR Pumba; Q6UX06; -. DR Antibodypedia; 24251; 256 antibodies from 35 providers. DR DNASU; 10562; -. DR Ensembl; ENST00000219022.3; ENSP00000219022.2; ENSG00000102837.7. DR GeneID; 10562; -. DR KEGG; hsa:10562; -. DR MANE-Select; ENST00000219022.3; ENSP00000219022.2; NM_006418.5; NP_006409.3. DR UCSC; uc001vhl.4; human. DR AGR; HGNC:17190; -. DR ClinPGx; PA134984745; -. DR CTD; 10562; -. DR DisGeNET; 10562; -. DR GeneCards; OLFM4; -. DR HGNC; HGNC:17190; OLFM4. DR HPA; ENSG00000102837; Tissue enhanced (intestine, pancreas). DR MalaCards; OLFM4; -. DR MIM; 614061; gene. DR OpenTargets; ENSG00000102837; -. DR VEuPathDB; HostDB:ENSG00000102837; -. DR eggNOG; KOG3545; Eukaryota. DR GeneTree; ENSGT00940000155454; -. DR HOGENOM; CLU_035236_5_0_1; -. DR InParanoid; Q6UX06; -. DR OMA; LRITYGQ; -. DR OrthoDB; 8626508at2759; -. DR PAN-GO; Q6UX06; 2 GO annotations based on evolutionary models. DR PhylomeDB; Q6UX06; -. DR PathwayCommons; Q6UX06; -. DR Reactome; R-HSA-6798695; Neutrophil degranulation. DR SignaLink; Q6UX06; -. DR Agora; ENSG00000102837; -. DR BioGRID-ORCS; 10562; 14 hits in 1146 CRISPR screens. DR ChiTaRS; OLFM4; human. DR GenomeRNAi; 10562; -. DR Pharos; Q6UX06; Tbio. DR PRO; PR:Q6UX06; -. DR Proteomes; UP000005640; Chromosome 13. DR RNAct; Q6UX06; protein. DR Bgee; ENSG00000102837; Expressed in urethra and 123 other cell types or tissues. DR GO; GO:0005829; C:cytosol; IDA:HPA. DR GO; GO:0070062; C:extracellular exosome; HDA:UniProtKB. DR GO; GO:0005576; C:extracellular region; IDA:UniProtKB. DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell. DR GO; GO:0005654; C:nucleoplasm; IDA:HPA. DR GO; GO:0048471; C:perinuclear region of cytoplasm; IDA:UniProtKB. DR GO; GO:0005886; C:plasma membrane; IDA:UniProtKB. DR GO; GO:0032991; C:protein-containing complex; IMP:UniProtKB. DR GO; GO:0042581; C:specific granule; IDA:UniProtKB. DR GO; GO:0035580; C:specific granule lumen; TAS:Reactome. DR GO; GO:1904724; C:tertiary granule lumen; TAS:Reactome. DR GO; GO:0045296; F:cadherin binding; IMP:UniProtKB. DR GO; GO:0005198; F:structural molecule activity; IDA:UniProtKB. DR GO; GO:1900026; P:positive regulation of substrate adhesion-dependent cell spreading; IDA:UniProtKB. DR GO; GO:0007165; P:signal transduction; IBA:GO_Central. DR InterPro; IPR003112; Olfac-like_dom. DR InterPro; IPR050605; Olfactomedin-like_domain. DR InterPro; IPR011041; Quinoprot_gluc/sorb_DH_b-prop. DR PANTHER; PTHR23192:SF7; OLFACTOMEDIN-4; 1. DR PANTHER; PTHR23192; OLFACTOMEDIN-RELATED; 1. DR Pfam; PF02191; OLF; 1. DR SMART; SM00284; OLF; 1. DR SUPFAM; SSF50952; Soluble quinoprotein glucose dehydrogenase; 1. DR PROSITE; PS51132; OLF; 1. PE 1: Evidence at protein level; KW Cell adhesion; Coiled coil; Disulfide bond; Glycoprotein; Mitochondrion; KW Proteomics identification; Reference proteome; Secreted; Signal. FT SIGNAL 1..20 FT /evidence="ECO:0000255" FT CHAIN 21..510 FT /note="Olfactomedin-4" FT /id="PRO_0000311398" FT DOMAIN 245..507 FT /note="Olfactomedin-like" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00446" FT COILED 155..234 FT /evidence="ECO:0000255" FT CARBOHYD 72 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 136 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT CARBOHYD 253 FT /note="N-linked (GlcNAc...) asparagine" FT /evidence="ECO:0000255" FT DISULFID 246..437 FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00446" FT VARIANT 36 FT /note="S -> P (in dbSNP:rs35790097)" FT /id="VAR_037246" FT MUTAGEN 83 FT /note="C->A: Abolishes secretion. No effect on multimer FT formation." FT /evidence="ECO:0000269|PubMed:16566923" FT MUTAGEN 85 FT /note="C->A: Abolishes secretion. No effect on multimer FT formation." FT /evidence="ECO:0000269|PubMed:16566923" FT MUTAGEN 226 FT /note="C->A: No effect on secretion. Affects multimer FT formation." FT /evidence="ECO:0000269|PubMed:16566923" FT MUTAGEN 246 FT /note="C->A: Abolishes secretion. No effect on multimer FT formation." FT /evidence="ECO:0000269|PubMed:16566923" FT MUTAGEN 437 FT /note="C->A: Abolishes secretion. No effect on multimer FT formation." FT /evidence="ECO:0000269|PubMed:16566923" FT CONFLICT 129 FT /note="V -> L (in Ref. 5; AAC72970)" FT /evidence="ECO:0000305" FT CONFLICT 304 FT /note="R -> I (in Ref. 5; AAC72970)" FT /evidence="ECO:0000305" SQ SEQUENCE 510 AA; 57280 MW; ACF03365D2164900 CRC64; MRPGLSFLLA LLFFLGQAAG DLGDVGPPIP SPGFSSFPGV DSSSSFSSSS RSGSSSSRSL GSGGSVSQLF SNFTGSVDDR GTCQCSVSLP DTTFPVDRVE RLEFTAHVLS QKFEKELSKV REYVQLISVY EKKLLNLTVR IDIMEKDTIS YTELDFELIK VEVKEMEKLV IQLKESFGGS SEIVDQLEVE IRNMTLLVEK LETLDKNNVL AIRREIVALK TKLKECEASK DQNTPVVHPP PTPGSCGHGG VVNISKPSVV QLNWRGFSYL YGAWGRDYSP QHPNKGLYWV APLNTDGRLL EYYRLYNTLD DLLLYINARE LRITYGQGSG TAVYNNNMYV NMYNTGNIAR VNLTTNTIAV TQTLPNAAYN NRFSYANVAW QDIDFAVDEN GLWVIYSTEA STGNMVISKL NDTTLQVLNT WYTKQYKPSA SNAFMVCGVL YATRTMNTRT EEIFYYYDTN TGKEGKLDIV MHKMQEKVQS INYNPFDQKL YVYNDGYLLN YDLSVLQKPQ //