ID PTN9_HUMAN Reviewed; 593 AA. AC P43378; Q53XR9; DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1995, sequence version 1. DT 02-SEP-2026, entry version 221. DE RecName: Full=Tyrosine-protein phosphatase non-receptor type 9; DE EC=3.1.3.48; DE AltName: Full=Protein-tyrosine phosphatase MEG2; DE Short=PTPase MEG2; GN Name=PTPN9; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA]. RC TISSUE=Placenta; RX PubMed=1557404; DOI=10.1073/pnas.89.7.2980; RA Gu M., Warshawsky I., Majerus P.W.; RT "Cloning and expression of a cytosolic megakaryocyte protein-tyrosine- RT phosphatase with sequence homology to retinaldehyde-binding protein and RT yeast SEC14p."; RL Proc. Natl. Acad. Sci. U.S.A. 89:2980-2984(1992). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RA Kalnine N., Chen X., Rolfs A., Halleck A., Hines L., Eisenstein S., RA Koundinya M., Raphael J., Moreira D., Kelley T., LaBaer J., Lin Y., RA Phelan M., Farmer A.; RT "Cloning of human full-length CDSs in BD Creator(TM) system donor vector."; RL Submitted (MAY-2003) to the EMBL/GenBank/DDBJ databases. RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. RC TISSUE=Pancreas; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma; RX PubMed=18669648; DOI=10.1073/pnas.0805139105; RA Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., RA Elledge S.J., Gygi S.P.; RT "A quantitative atlas of mitotic phosphorylation."; RL Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008). RN [5] RP ACETYLATION [LARGE SCALE ANALYSIS] AT MET-1, AND IDENTIFICATION BY MASS RP SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19413330; DOI=10.1021/ac9004309; RA Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S.; RT "Lys-N and trypsin cover complementary parts of the phosphoproteome in a RT refined SCX-based approach."; RL Anal. Chem. 81:4493-4501(2009). RN [6] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=21269460; DOI=10.1186/1752-0509-5-17; RA Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., RA Bennett K.L., Superti-Furga G., Colinge J.; RT "Initial characterization of the human central proteome."; RL BMC Syst. Biol. 5:17-17(2011). RN [7] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [8] RP X-RAY CRYSTALLOGRAPHY (1.6 ANGSTROMS) OF 277-582, AND FUNCTION. RX PubMed=19167335; DOI=10.1016/j.cell.2008.11.038; RA Barr A.J., Ugochukwu E., Lee W.H., King O.N.F., Filippakopoulos P., RA Alfano I., Savitsky P., Burgess-Brown N.A., Mueller S., Knapp S.; RT "Large-scale structural analysis of the classical human protein tyrosine RT phosphatome."; RL Cell 136:352-363(2009). CC -!- FUNCTION: Protein-tyrosine phosphatase that could participate in the CC transfer of hydrophobic ligands or in functions of the Golgi apparatus. CC {ECO:0000269|PubMed:19167335}. CC -!- CATALYTIC ACTIVITY: CC Reaction=O-phospho-L-tyrosyl-[protein] + H2O = L-tyrosyl-[protein] + CC phosphate; Xref=Rhea:RHEA:10684, Rhea:RHEA-COMP:10136, Rhea:RHEA- CC COMP:20101, ChEBI:CHEBI:15377, ChEBI:CHEBI:43474, ChEBI:CHEBI:46858, CC ChEBI:CHEBI:61978; EC=3.1.3.48; Evidence={ECO:0000255|PROSITE- CC ProRule:PRU10044}; CC -!- INTERACTION: CC P43378; Q6RW13: AGTRAP; NbExp=5; IntAct=EBI-742898, EBI-741181; CC P43378; Q6RW13-2: AGTRAP; NbExp=3; IntAct=EBI-742898, EBI-11522760; CC P43378; Q13520: AQP6; NbExp=3; IntAct=EBI-742898, EBI-13059134; CC P43378; Q3SXY8: ARL13B; NbExp=3; IntAct=EBI-742898, EBI-11343438; CC P43378; Q15041: ARL6IP1; NbExp=3; IntAct=EBI-742898, EBI-714543; CC P43378; P18859: ATP5PF; NbExp=3; IntAct=EBI-742898, EBI-2606700; CC P43378; Q8WZ55: BSND; NbExp=3; IntAct=EBI-742898, EBI-7996695; CC P43378; P51861: CDR1; NbExp=3; IntAct=EBI-742898, EBI-2836538; CC P43378; Q9HA82: CERS4; NbExp=3; IntAct=EBI-742898, EBI-2622997; CC P43378; Q8IZR5-2: CMTM4; NbExp=3; IntAct=EBI-742898, EBI-17278014; CC P43378; Q96DZ9: CMTM5; NbExp=4; IntAct=EBI-742898, EBI-2548702; CC P43378; Q96DZ9-2: CMTM5; NbExp=3; IntAct=EBI-742898, EBI-11522780; CC P43378; Q9NZJ6: COQ3; NbExp=3; IntAct=EBI-742898, EBI-10897372; CC P43378; Q7Z7G2: CPLX4; NbExp=3; IntAct=EBI-742898, EBI-18013275; CC P43378; Q96BA8: CREB3L1; NbExp=3; IntAct=EBI-742898, EBI-6942903; CC P43378; Q9GZP9: DERL2; NbExp=3; IntAct=EBI-742898, EBI-7962814; CC P43378; Q15125: EBP; NbExp=3; IntAct=EBI-742898, EBI-3915253; CC P43378; Q9NRY5: FAM114A2; NbExp=3; IntAct=EBI-742898, EBI-10973142; CC P43378; Q9Y680: FKBP7; NbExp=3; IntAct=EBI-742898, EBI-3918971; CC P43378; O00258: GET1; NbExp=3; IntAct=EBI-742898, EBI-18908258; CC P43378; P10912: GHR; NbExp=2; IntAct=EBI-742898, EBI-286316; CC P43378; P08034: GJB1; NbExp=3; IntAct=EBI-742898, EBI-17565645; CC P43378; Q5T7V8: GORAB; NbExp=3; IntAct=EBI-742898, EBI-3917143; CC P43378; Q8NBQ5: HSD17B11; NbExp=3; IntAct=EBI-742898, EBI-1052304; CC P43378; Q7Z5P4: HSD17B13; NbExp=3; IntAct=EBI-742898, EBI-18053395; CC P43378; Q9H400: LIME1; NbExp=3; IntAct=EBI-742898, EBI-2830566; CC P43378; Q969L2: MAL2; NbExp=4; IntAct=EBI-742898, EBI-944295; CC P43378; P46459: NSF; NbExp=2; IntAct=EBI-742898, EBI-712251; CC P43378; Q96AL5: PBX3; NbExp=3; IntAct=EBI-742898, EBI-741171; CC P43378; O00623: PEX12; NbExp=3; IntAct=EBI-742898, EBI-594836; CC P43378; O60664: PLIN3; NbExp=3; IntAct=EBI-742898, EBI-725795; CC P43378; Q96HR9-2: REEP6; NbExp=3; IntAct=EBI-742898, EBI-14065960; CC P43378; O95197: RTN3; NbExp=5; IntAct=EBI-742898, EBI-740467; CC P43378; O95197-3: RTN3; NbExp=3; IntAct=EBI-742898, EBI-11525735; CC P43378; O15126: SCAMP1; NbExp=3; IntAct=EBI-742898, EBI-954338; CC P43378; Q7RTY0: SLC16A13; NbExp=3; IntAct=EBI-742898, EBI-12243266; CC P43378; Q8IWU4: SLC30A8; NbExp=3; IntAct=EBI-742898, EBI-10262251; CC P43378; P30825: SLC7A1; NbExp=3; IntAct=EBI-742898, EBI-4289564; CC P43378; Q9NPE6: SPAG4; NbExp=3; IntAct=EBI-742898, EBI-10819434; CC P43378; P08247: SYP; NbExp=3; IntAct=EBI-742898, EBI-9071725; CC P43378; Q7Z6W1: TMCO2; NbExp=3; IntAct=EBI-742898, EBI-12807858; CC P43378; Q96HE8: TMEM80; NbExp=3; IntAct=EBI-742898, EBI-11742770; CC P43378; Q8N661: TMEM86B; NbExp=3; IntAct=EBI-742898, EBI-2548832; CC P43378; Q9Y320: TMX2; NbExp=3; IntAct=EBI-742898, EBI-6447886; CC P43378; O95070: YIF1A; NbExp=3; IntAct=EBI-742898, EBI-2799703; CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000305}. CC -!- SIMILARITY: Belongs to the protein-tyrosine phosphatase family. Non- CC receptor class 3 subfamily. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; M83738; AAA60226.1; -; mRNA. DR EMBL; BT007405; AAP36073.1; -; mRNA. DR EMBL; BC010863; AAH10863.1; -; mRNA. DR CCDS; CCDS10280.1; -. DR PIR; A42690; A42690. DR RefSeq; NP_002824.1; NM_002833.4. DR PDB; 2PA5; X-ray; 1.60 A; A/B=277-582. DR PDB; 4GE2; X-ray; 1.80 A; A/B=277-582. DR PDB; 4GE5; X-ray; 2.00 A; A/B=277-582. DR PDB; 4GE6; X-ray; 1.40 A; A/B=277-582. DR PDB; 4ICZ; X-ray; 1.90 A; A=277-582. DR PDB; 6KZQ; X-ray; 1.70 A; A=277-583. DR PDB; 6L03; X-ray; 2.08 A; A=277-583. DR AlphaFoldDB; P43378; -. DR MDRepo; P43378; -. DR SMR; P43378; -. DR BioGRID; 111744; 118. DR FunCoup; P43378; 3092. DR IntAct; P43378; 59. DR MINT; P43378; -. DR NDEx; IQUERY-CP-PTPN9; 3 NDEx IQuery Curated Pathways. DR STRING; 9606.ENSP00000482732; -. DR BindingDB; P43378; -. DR ChEMBL; CHEMBL6117; -. DR DEPOD; PTPN9; -. DR iPTMnet; P43378; -. DR MetOSite; P43378; -. DR PhosphoSitePlus; P43378; -. DR BioMuta; PTPN9; -. DR DMDM; 1172724; -. DR jPOST; P43378; -. DR MassIVE; P43378; -. DR PaxDb; 9606-ENSP00000482732; -. DR PeptideAtlas; P43378; -. DR ProteomicsDB; 55630; -. DR Pumba; P43378; -. DR Antibodypedia; 27331; 129 antibodies from 29 providers. DR DNASU; 5780; -. DR Ensembl; ENST00000618819.5; ENSP00000482732.1; ENSG00000169410.12. DR GeneID; 5780; -. DR KEGG; hsa:5780; -. DR MANE-Select; ENST00000618819.5; ENSP00000482732.1; NM_002833.4; NP_002824.1. DR UCSC; uc002bal.5; human. DR AGR; HGNC:9661; -. DR ClinPGx; PA34005; -. DR CTD; 5780; -. DR DisGeNET; 5780; -. DR GeneCards; PTPN9; -. DR HGNC; HGNC:9661; PTPN9. DR HPA; ENSG00000169410; Low tissue specificity. DR MIM; 600768; gene. DR OpenTargets; ENSG00000169410; -. DR VEuPathDB; HostDB:ENSG00000169410; -. DR eggNOG; ENOG502QR81; Eukaryota. DR GeneTree; ENSGT00940000157447; -. DR InParanoid; P43378; -. DR OMA; DLASWNF; -. DR OrthoDB; 10051650at2759; -. DR PAN-GO; P43378; 2 GO annotations based on evolutionary models. DR PhylomeDB; P43378; -. DR BRENDA; 3.1.3.48; 2681. DR PathwayCommons; P43378; -. DR Reactome; R-HSA-9008059; Interleukin-37 signaling. DR SignaLink; P43378; -. DR SIGNOR; P43378; -. DR Agora; ENSG00000169410; -. DR BioGRID-ORCS; 5780; 21 hits in 1174 CRISPR screens. DR CD-CODE; 91857CE7; Nucleolus. DR ChiTaRS; PTPN9; human. DR EvolutionaryTrace; P43378; -. DR GeneWiki; PTPN9; -. DR GenomeRNAi; 5780; -. DR Pharos; P43378; Tchem. DR PRO; PR:P43378; -. DR Proteomes; UP000005640; Chromosome 15. DR RNAct; P43378; protein. DR Bgee; ENSG00000169410; Expressed in ventricular zone and 165 other cell types or tissues. DR ExpressionAtlas; P43378; baseline and differential. DR GO; GO:0005737; C:cytoplasm; IDA:UniProtKB. DR GO; GO:0044306; C:neuron projection terminus; IDA:MGI. DR GO; GO:0005654; C:nucleoplasm; TAS:Reactome. DR GO; GO:0004726; F:non-membrane spanning protein tyrosine phosphatase activity; TAS:ProtInc. DR GO; GO:0004725; F:protein tyrosine phosphatase activity; IDA:UniProtKB. DR GO; GO:0010977; P:negative regulation of neuron projection development; IDA:MGI. DR GO; GO:0035335; P:peptidyl-tyrosine dephosphorylation; IDA:MGI. DR GO; GO:1903078; P:positive regulation of protein localization to plasma membrane; IDA:MGI. DR GO; GO:0006470; P:protein dephosphorylation; TAS:ProtInc. DR GO; GO:0007165; P:signal transduction; IBA:GO_Central. DR CDD; cd14543; PTPc-N9; 1. DR CDD; cd00170; SEC14; 1. DR FunFam; 3.40.525.10:FF:000005; Tyrosine-protein phosphatase non-receptor type 9; 1. DR FunFam; 3.90.190.10:FF:000026; tyrosine-protein phosphatase non-receptor type 9; 1. DR Gene3D; 3.40.525.10; CRAL-TRIO lipid binding domain; 1. DR Gene3D; 1.10.8.20; N-terminal domain of phosphatidylinositol transfer protein sec14p; 1. DR Gene3D; 3.90.190.10; Protein tyrosine phosphatase superfamily; 1. DR InterPro; IPR001251; CRAL-TRIO_dom. DR InterPro; IPR036865; CRAL-TRIO_dom_sf. DR InterPro; IPR011074; CRAL/TRIO_N_dom. DR InterPro; IPR036273; CRAL/TRIO_N_dom_sf. DR InterPro; IPR029021; Prot-tyrosine_phosphatase-like. DR InterPro; IPR050348; Protein-Tyr_Phosphatase. DR InterPro; IPR000242; PTP_cat. DR InterPro; IPR016130; Tyr_Pase_AS. DR InterPro; IPR003595; Tyr_Pase_cat. DR InterPro; IPR000387; Tyr_Pase_dom. DR PANTHER; PTHR19134; RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE; 1. DR PANTHER; PTHR19134:SF285; TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 9; 1. DR Pfam; PF00650; CRAL_TRIO; 1. DR Pfam; PF00102; Y_phosphatase; 1. DR PRINTS; PR00700; PRTYPHPHTASE. DR SMART; SM01100; CRAL_TRIO_N; 1. DR SMART; SM00194; PTPc; 1. DR SMART; SM00404; PTPc_motif; 1. DR SMART; SM00516; SEC14; 1. DR SUPFAM; SSF52799; (Phosphotyrosine protein) phosphatases II; 1. DR SUPFAM; SSF52087; CRAL/TRIO domain; 1. DR SUPFAM; SSF46938; CRAL/TRIO N-terminal domain; 1. DR PROSITE; PS50191; CRAL_TRIO; 1. DR PROSITE; PS00383; TYR_PHOSPHATASE_1; 1. DR PROSITE; PS50056; TYR_PHOSPHATASE_2; 1. DR PROSITE; PS50055; TYR_PHOSPHATASE_PTP; 1. DR PDBsum; 2PA5; -. DR PDBsum; 4GE2; -. DR PDBsum; 4GE5; -. DR PDBsum; 4GE6; -. DR PDBsum; 4ICZ; -. DR PDBsum; 6KZQ; -. DR PDBsum; 6L03; -. PE 1: Evidence at protein level; KW 3D-structure; Acetylation; Cytoplasm; Hydrolase; Protein phosphatase; KW Proteomics identification; Reference proteome. FT CHAIN 1..593 FT /note="Tyrosine-protein phosphatase non-receptor type 9" FT /id="PRO_0000094764" FT DOMAIN 84..243 FT /note="CRAL-TRIO" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00056" FT DOMAIN 303..574 FT /note="Tyrosine-protein phosphatase" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00160" FT REGION 1..21 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT ACT_SITE 515 FT /note="Phosphocysteine intermediate" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00160, FT ECO:0000255|PROSITE-ProRule:PRU10044" FT BINDING 470 FT /ligand="substrate" FT /evidence="ECO:0000250" FT BINDING 515..521 FT /ligand="substrate" FT /evidence="ECO:0000250" FT BINDING 559 FT /ligand="substrate" FT /evidence="ECO:0000250" FT MOD_RES 1 FT /note="N-acetylmethionine" FT /evidence="ECO:0007744|PubMed:19413330" FT HELIX 288..312 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 320..323 FT /evidence="ECO:0007829|PDB:4GE6" FT TURN 325..327 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 328..330 FT /evidence="ECO:0007829|PDB:4GE6" FT TURN 340..342 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 344..346 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 350..352 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 359..365 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 368..375 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 376..379 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 380..382 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 383..392 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 397..400 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 404..406 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 423..426 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 429..438 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 440..451 FT /evidence="ECO:0007829|PDB:4GE6" FT TURN 452..455 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 456..465 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 470..472 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 478..497 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 508..510 FT /evidence="ECO:0007829|PDB:6L03" FT STRAND 511..514 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 516..519 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 520..538 FT /evidence="ECO:0007829|PDB:4GE6" FT STRAND 539..541 FT /evidence="ECO:0007829|PDB:6KZQ" FT HELIX 543..550 FT /evidence="ECO:0007829|PDB:4GE6" FT TURN 551..553 FT /evidence="ECO:0007829|PDB:4GE6" FT HELIX 561..577 FT /evidence="ECO:0007829|PDB:4GE6" SQ SEQUENCE 593 AA; 68020 MW; 9BD75A5A986DDA0B CRC64; MEPATAPRPD MAPELTPEEE QATKQFLEEI NKWTVQYNVS PLSWNVAVKF LMARKFDVLR AIELFHSYRE TRRKEGIVKL KPHEEPLRSE ILSGKFTILN VRDPTGASIA LFTARLHHPH KSVQHVVLQA LFYLLDRAVD SFETQRNGLV FIYDMCGSNY ANFELDLGKK VLNLLKGAFP ARLKKVLIVG APIWFRVPYS IISLLLKDKV RERIQILKTS EVTQHLPREC LPENLGGYVK IDLATWNFQF LPQVNGHPDP FDEIILFSLP PALDWDSVHV PGPHAMTIQE LVDYVNARQK QGIYEEYEDI RRENPVGTFH CSMSPGNLEK NRYGDVPCLD QTRVKLTKRS GHTQTDYINA SFMDGYKQKN AYIGTQGPLE NTYRDFWLMV WEQKVLVIVM TTRFEEGGRR KCGQYWPLEK DSRIRFGFLT VTNLGVENMN HYKKTTLEIH NTEERQKRQV THFQFLSWPD YGVPSSAASL IDFLRVVRNQ QSLAVSNMGA RSKGQCPEPP IVVHCSAGIG RTGTFCSLDI CLAQLEELGT LNVFQTVSRM RTQRAFSIQT PEQYYFCYKA ILEFAEKEGM VSSGQNLLAV ESQ //