ID YRB1_YEAST Reviewed; 201 AA. AC P41920; D6VRY9; DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot. DT 01-NOV-1995, sequence version 1. DT 02-SEP-2026, entry version 196. DE RecName: Full=Ran-specific GTPase-activating protein 1; DE AltName: Full=Chromosome stability protein 20; DE AltName: Full=Perinuclear array-localized protein; DE AltName: Full=Ran-binding protein 1; DE Short=RANBP1; GN Name=YRB1; Synonyms=CST20, HTN1, SFO1; OrderedLocusNames=YDR002W; GN ORFNames=YD8119.08; OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast). OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. OX NCBI_TaxID=559292; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RC STRAIN=H9; RX PubMed=7948031; DOI=10.1016/0167-4781(94)90233-x; RA Butler G., Wolfe K.H.; RT "Yeast homologue of mammalian Ran binding protein 1."; RL Biochim. Biophys. Acta 1219:711-712(1994). RN [2] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RX PubMed=8444853; DOI=10.1016/s0021-9258(18)53463-3; RA Kopp M., Mueller H., Holzer H.; RT "Molecular analysis of the neutral trehalase gene from Saccharomyces RT cerevisiae."; RL J. Biol. Chem. 268:4766-4774(1993). RN [3] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND CHARACTERIZATION. RX PubMed=7836422; DOI=10.1074/jbc.270.5.1975; RA Ouspenski I.I., Mueller U.W., Matynia A., Sazer S., Elledge S.J., RA Brinkley B.R.; RT "Ran-binding protein-1 is an essential component of the Ran/RCC1 molecular RT switch system in budding yeast."; RL J. Biol. Chem. 270:1975-1978(1995). RN [4] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA]. RA Trueheart J., Richards S., Macara I.G., Thorner J.; RL Submitted (DEC-1994) to the EMBL/GenBank/DDBJ databases. RN [5] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RC STRAIN=ATCC 204508 / S288c; RX PubMed=9169867; DOI=10.1038/387s075; RA Jacq C., Alt-Moerbe J., Andre B., Arnold W., Bahr A., Ballesta J.P.G., RA Bargues M., Baron L., Becker A., Biteau N., Bloecker H., Blugeon C., RA Boskovic J., Brandt P., Brueckner M., Buitrago M.J., Coster F., RA Delaveau T., del Rey F., Dujon B., Eide L.G., Garcia-Cantalejo J.M., RA Goffeau A., Gomez-Peris A., Granotier C., Hanemann V., Hankeln T., RA Hoheisel J.D., Jaeger W., Jimenez A., Jonniaux J.-L., Kraemer C., RA Kuester H., Laamanen P., Legros Y., Louis E.J., Moeller-Rieker S., RA Monnet A., Moro M., Mueller-Auer S., Nussbaumer B., Paricio N., Paulin L., RA Perea J., Perez-Alonso M., Perez-Ortin J.E., Pohl T.M., Prydz H., RA Purnelle B., Rasmussen S.W., Remacha M.A., Revuelta J.L., Rieger M., RA Salom D., Saluz H.P., Saiz J.E., Saren A.-M., Schaefer M., Scharfe M., RA Schmidt E.R., Schneider C., Scholler P., Schwarz S., Soler-Mira A., RA Urrestarazu L.A., Verhasselt P., Vissers S., Voet M., Volckaert G., RA Wagner G., Wambutt R., Wedler E., Wedler H., Woelfl S., Harris D.E., RA Bowman S., Brown D., Churcher C.M., Connor R., Dedman K., Gentles S., RA Hamlin N., Hunt S., Jones L., McDonald S., Murphy L.D., Niblett D., RA Odell C., Oliver K., Rajandream M.A., Richards C., Shore L., Walsh S.V., RA Barrell B.G., Dietrich F.S., Mulligan J.T., Allen E., Araujo R., Aviles E., RA Berno A., Carpenter J., Chen E., Cherry J.M., Chung E., Duncan M., RA Hunicke-Smith S., Hyman R.W., Komp C., Lashkari D., Lew H., Lin D., RA Mosedale D., Nakahara K., Namath A., Oefner P., Oh C., Petel F.X., RA Roberts D., Schramm S., Schroeder M., Shogren T., Shroff N., Winant A., RA Yelton M.A., Botstein D., Davis R.W., Johnston M., Andrews S., Brinkman R., RA Cooper J., Ding H., Du Z., Favello A., Fulton L., Gattung S., Greco T., RA Hallsworth K., Hawkins J., Hillier L.W., Jier M., Johnson D., Johnston L., RA Kirsten J., Kucaba T., Langston Y., Latreille P., Le T., Mardis E., RA Menezes S., Miller N., Nhan M., Pauley A., Peluso D., Rifkin L., Riles L., RA Taich A., Trevaskis E., Vignati D., Wilcox L., Wohldman P., Vaudin M., RA Wilson R., Waterston R., Albermann K., Hani J., Heumann K., Kleine K., RA Mewes H.-W., Zollner A., Zaccaria P.; RT "The nucleotide sequence of Saccharomyces cerevisiae chromosome IV."; RL Nature 387:75-78(1997). RN [6] RP GENOME REANNOTATION. RC STRAIN=ATCC 204508 / S288c; RX PubMed=24374639; DOI=10.1534/g3.113.008995; RA Engel S.R., Dietrich F.S., Fisk D.G., Binkley G., Balakrishnan R., RA Costanzo M.C., Dwight S.S., Hitz B.C., Karra K., Nash R.S., Weng S., RA Wong E.D., Lloyd P., Skrzypek M.S., Miyasato S.R., Simison M., Cherry J.M.; RT "The reference genome sequence of Saccharomyces cerevisiae: Then and now."; RL G3 (Bethesda) 4:389-398(2014). RN [7] RP CHARACTERIZATION. RX PubMed=7489726; DOI=10.1002/j.1460-2075.1995.tb00221.x; RA Schlenstedt G., Wong D.H., Koepp D.M., Silver P.A.; RT "Mutants in a yeast Ran binding protein are defective in nuclear RT transport."; RL EMBO J. 14:5367-5378(1995). RN [8] RP CHARACTERIZATION. RX PubMed=10825193; DOI=10.1128/mcb.20.12.4295-4308.2000; RA Kunzler M., Gerstberger T., Stutz F., Bischoff F.R., Hurt E.; RT "Yeast Ran-binding protein 1 (Yrb1) shuttles between the nucleus and RT cytoplasm and is exported from the nucleus via a CRM1 (XPO1)-dependent RT pathway."; RL Mol. Cell. Biol. 20:4295-4308(2000). RN [9] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-60, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC STRAIN=ADR376; RX PubMed=17330950; DOI=10.1021/pr060559j; RA Li X., Gerber S.A., Rudner A.D., Beausoleil S.A., Haas W., Villen J., RA Elias J.E., Gygi S.P.; RT "Large-scale phosphorylation analysis of alpha-factor-arrested RT Saccharomyces cerevisiae."; RL J. Proteome Res. 6:1190-1197(2007). RN [10] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-60, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=17287358; DOI=10.1073/pnas.0607084104; RA Chi A., Huttenhower C., Geer L.Y., Coon J.J., Syka J.E.P., Bai D.L., RA Shabanowitz J., Burke D.J., Troyanskaya O.G., Hunt D.F.; RT "Analysis of phosphorylation sites on proteins from Saccharomyces RT cerevisiae by electron transfer dissociation (ETD) mass spectrometry."; RL Proc. Natl. Acad. Sci. U.S.A. 104:2193-2198(2007). RN [11] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-60, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=18407956; DOI=10.1074/mcp.m700468-mcp200; RA Albuquerque C.P., Smolka M.B., Payne S.H., Bafna V., Eng J., Zhou H.; RT "A multidimensional chromatography technology for in-depth phosphoproteome RT analysis."; RL Mol. Cell. Proteomics 7:1389-1396(2008). RN [12] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-60, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RX PubMed=19779198; DOI=10.1126/science.1172867; RA Holt L.J., Tuch B.B., Villen J., Johnson A.D., Gygi S.P., Morgan D.O.; RT "Global analysis of Cdk1 substrate phosphorylation sites provides insights RT into evolution."; RL Science 325:1682-1686(2009). CC -!- FUNCTION: Important for the export of protein containing nuclear export CC signal (NES) out of the nucleus. Stimulates the GTPase activity of GSP1 CC and GSP2. CC -!- SUBUNIT: Interacts with GSP1 and PRP20. CC -!- SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=Shuttles between the CC nucleus and cytoplasm. CC -!- SIMILARITY: Belongs to the RANBP1 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; Z33503; CAA83911.1; -; Genomic_DNA. DR EMBL; X65925; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; L38489; AAA57276.1; -; Genomic_DNA. DR EMBL; Z48008; CAA88062.1; -; Genomic_DNA. DR EMBL; BK006938; DAA11849.1; -; Genomic_DNA. DR PIR; S50219; S50219. DR RefSeq; NP_010285.1; NM_001180310.1. DR PDB; 3M1I; X-ray; 2.00 A; B=11-201. DR PDB; 4GMX; X-ray; 2.10 A; B=62-201. DR PDB; 4GPT; X-ray; 2.22 A; B=62-201. DR PDB; 4HAT; X-ray; 1.78 A; B=62-201. DR PDB; 4HAU; X-ray; 2.00 A; B=62-201. DR PDB; 4HAV; X-ray; 2.00 A; B=62-201. DR PDB; 4HAW; X-ray; 1.90 A; B=62-201. DR PDB; 4HAX; X-ray; 2.28 A; B=62-201. DR PDB; 4HAY; X-ray; 2.30 A; B=62-201. DR PDB; 4HAZ; X-ray; 1.90 A; B=62-201. DR PDB; 4HB0; X-ray; 2.20 A; B=62-201. DR PDB; 4HB2; X-ray; 1.80 A; B=62-201. DR PDB; 4HB3; X-ray; 2.80 A; B=62-201. DR PDB; 4HB4; X-ray; 2.05 A; B=62-201. DR PDB; 4WVF; X-ray; 1.80 A; B=62-201. DR PDB; 5DH9; X-ray; 2.55 A; B=62-201. DR PDB; 5DHA; X-ray; 2.95 A; B=62-201. DR PDB; 5DHF; X-ray; 2.29 A; B=62-201. DR PDB; 5DI9; X-ray; 2.28 A; B=62-201. DR PDB; 5DIF; X-ray; 2.09 A; B=62-201. DR PDB; 5JLJ; X-ray; 2.50 A; B=62-201. DR PDB; 5UWH; X-ray; 2.26 A; B=62-201. DR PDB; 5UWI; X-ray; 2.14 A; B=62-201. DR PDB; 5UWJ; X-ray; 2.22 A; B=62-201. DR PDB; 5UWO; X-ray; 2.35 A; B=62-201. DR PDB; 5UWP; X-ray; 2.05 A; B=62-201. DR PDB; 5UWQ; X-ray; 2.28 A; B=62-201. DR PDB; 5UWR; X-ray; 2.24 A; B=62-201. DR PDB; 5UWS; X-ray; 2.40 A; B=62-201. DR PDB; 5UWT; X-ray; 2.34 A; B=62-201. DR PDB; 5UWU; X-ray; 2.24 A; B=62-201. DR PDB; 5UWW; X-ray; 2.15 A; B=62-201. DR PDB; 5YRO; X-ray; 2.40 A; B=62-201. DR PDB; 5YST; X-ray; 2.04 A; B=62-200. DR PDB; 5YSU; X-ray; 2.30 A; B=62-201. DR PDB; 5YTB; X-ray; 2.30 A; B=62-200. DR PDB; 5ZPU; X-ray; 2.60 A; B=62-201. DR PDB; 6A38; X-ray; 2.69 A; B=62-201. DR PDB; 6A3A; X-ray; 2.30 A; B=62-201. DR PDB; 6A3B; X-ray; 2.51 A; B=62-201. DR PDB; 6A3C; X-ray; 2.35 A; B=62-201. DR PDB; 6A3E; X-ray; 2.70 A; B=62-201. DR PDB; 6CIT; X-ray; 2.03 A; B=62-201. DR PDB; 6LQ9; X-ray; 2.50 A; B=62-201. DR PDB; 6M60; X-ray; 2.17 A; B=62-201. DR PDB; 6M6X; X-ray; 2.88 A; B=62-201. DR PDB; 6X2M; X-ray; 2.35 A; B=62-201. DR PDB; 6X2O; X-ray; 2.55 A; B=62-201. DR PDB; 6X2P; X-ray; 2.40 A; B=62-201. DR PDB; 6X2R; X-ray; 2.30 A; B=62-201. DR PDB; 6X2S; X-ray; 2.50 A; B=62-201. DR PDB; 6X2U; X-ray; 2.20 A; B=62-201. DR PDB; 6X2V; X-ray; 2.82 A; B=62-201. DR PDB; 6X2W; X-ray; 3.00 A; B=62-201. DR PDB; 6X2X; X-ray; 2.46 A; B=62-201. DR PDB; 6X2Y; X-ray; 2.30 A; B=62-201. DR PDB; 6XJP; X-ray; 2.80 A; B=62-201. DR PDB; 6XJR; X-ray; 1.94 A; B=62-201. DR PDB; 6XJS; X-ray; 1.94 A; B=62-201. DR PDB; 6XJT; X-ray; 2.41 A; B=62-201. DR PDB; 6XJU; X-ray; 2.19 A; B=62-201. DR PDB; 7CND; X-ray; 1.80 A; B=62-201. DR PDB; 7DBG; X-ray; 2.06 A; B=62-201. DR PDB; 7L5E; X-ray; 1.94 A; B=62-201. DR PDB; 7YPZ; X-ray; 2.15 A; B=62-201. DR PDB; 8HQ3; X-ray; 2.10 A; B=62-201. DR PDB; 8HQ4; X-ray; 2.12 A; B=62-201. DR PDB; 8HQ5; X-ray; 2.25 A; B=62-201. DR PDB; 8HQ6; X-ray; 2.03 A; B=62-201. DR PDB; 8HUF; X-ray; 2.29 A; B=62-201. DR PDB; 8HUG; X-ray; 2.15 A; B=62-201. DR PDB; 8ITV; X-ray; 2.30 A; B=62-201. DR PDB; 9OGN; X-ray; 2.41 A; B=62-201. DR PDB; 9OGO; X-ray; 2.37 A; B=62-201. DR PDB; 9VM1; X-ray; 2.45 A; B=62-201. DR AlphaFoldDB; P41920; -. DR MDRepo; P41920; -. DR SMR; P41920; -. DR BioGRID; 32055; 271. DR DIP; DIP-838N; -. DR FunCoup; P41920; 1225. DR IntAct; P41920; 8. DR MINT; P41920; -. DR STRING; 4932.YDR002W; -. DR iPTMnet; P41920; -. DR PaxDb; 4932-YDR002W; -. DR PeptideAtlas; P41920; -. DR EnsemblFungi; YDR002W_mRNA; YDR002W; YDR002W. DR GeneID; 851565; -. DR KEGG; sce:YDR002W; -. DR AGR; SGD:S000002409; -. DR SGD; S000002409; YRB1. DR VEuPathDB; FungiDB:YDR002W; -. DR eggNOG; KOG0864; Eukaryota. DR HOGENOM; CLU_067861_2_1_1; -. DR InParanoid; P41920; -. DR OMA; NFKDSFM; -. DR OrthoDB; 2357150at2759; -. DR BioCyc; YEAST:G3O-29624-MONOMER; -. DR BioGRID-ORCS; 851565; 2 hits in 10 CRISPR screens. DR EvolutionaryTrace; P41920; -. DR PRO; PR:P41920; -. DR Proteomes; UP000002311; Chromosome IV. DR RNAct; P41920; protein. DR GO; GO:0005737; C:cytoplasm; IDA:SGD. DR GO; GO:0005643; C:nuclear pore; IBA:GO_Central. DR GO; GO:0005634; C:nucleus; IDA:SGD. DR GO; GO:0031267; F:small GTPase binding; IDA:SGD. DR GO; GO:0000082; P:G1/S transition of mitotic cell cycle; IMP:SGD. DR GO; GO:0051168; P:nuclear export; IBA:GO_Central. DR GO; GO:0006606; P:protein import into nucleus; IMP:SGD. DR GO; GO:0006405; P:RNA export from nucleus; IMP:SGD. DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IMP:SGD. DR CDD; cd13179; RanBD_RanBP1; 1. DR FunFam; 2.30.29.30:FF:000483; Ran-specific GTPase-activating protein 1; 1. DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1. DR IDEAL; IID50175; -. DR InterPro; IPR011993; PH-like_dom_sf. DR InterPro; IPR000156; Ran_bind_dom. DR InterPro; IPR045255; RanBP1-like. DR InterPro; IPR045256; RanBP1_RanBD. DR PANTHER; PTHR23138:SF87; E3 SUMO-PROTEIN LIGASE RANBP2; 1. DR PANTHER; PTHR23138; RAN BINDING PROTEIN; 1. DR Pfam; PF00638; Ran_BP1; 1. DR SMART; SM00160; RanBD; 1. DR SUPFAM; SSF50729; PH domain-like; 1. DR PROSITE; PS50196; RANBD1; 1. DR PDBsum; 3M1I; -. DR PDBsum; 4GMX; -. DR PDBsum; 4GPT; -. DR PDBsum; 4HAT; -. DR PDBsum; 4HAU; -. DR PDBsum; 4HAV; -. DR PDBsum; 4HAW; -. DR PDBsum; 4HAX; -. DR PDBsum; 4HAY; -. DR PDBsum; 4HAZ; -. DR PDBsum; 4HB0; -. DR PDBsum; 4HB2; -. DR PDBsum; 4HB3; -. DR PDBsum; 4HB4; -. DR PDBsum; 4WVF; -. DR PDBsum; 5DH9; -. DR PDBsum; 5DHA; -. DR PDBsum; 5DHF; -. DR PDBsum; 5DI9; -. DR PDBsum; 5DIF; -. DR PDBsum; 5JLJ; -. DR PDBsum; 5UWH; -. DR PDBsum; 5UWI; -. DR PDBsum; 5UWJ; -. DR PDBsum; 5UWO; -. DR PDBsum; 5UWP; -. DR PDBsum; 5UWQ; -. DR PDBsum; 5UWR; -. DR PDBsum; 5UWS; -. DR PDBsum; 5UWT; -. DR PDBsum; 5UWU; -. DR PDBsum; 5UWW; -. DR PDBsum; 5YRO; -. DR PDBsum; 5YST; -. DR PDBsum; 5YSU; -. DR PDBsum; 5YTB; -. DR PDBsum; 5ZPU; -. DR PDBsum; 6A38; -. DR PDBsum; 6A3A; -. DR PDBsum; 6A3B; -. DR PDBsum; 6A3C; -. DR PDBsum; 6A3E; -. DR PDBsum; 6CIT; -. DR PDBsum; 6LQ9; -. DR PDBsum; 6M60; -. DR PDBsum; 6M6X; -. DR PDBsum; 6X2M; -. DR PDBsum; 6X2O; -. DR PDBsum; 6X2P; -. DR PDBsum; 6X2R; -. DR PDBsum; 6X2S; -. DR PDBsum; 6X2U; -. DR PDBsum; 6X2V; -. DR PDBsum; 6X2W; -. DR PDBsum; 6X2X; -. DR PDBsum; 6X2Y; -. DR PDBsum; 6XJP; -. DR PDBsum; 6XJR; -. DR PDBsum; 6XJS; -. DR PDBsum; 6XJT; -. DR PDBsum; 6XJU; -. DR PDBsum; 7CND; -. DR PDBsum; 7DBG; -. DR PDBsum; 7L5E; -. DR PDBsum; 7YPZ; -. DR PDBsum; 8HQ3; -. DR PDBsum; 8HQ4; -. DR PDBsum; 8HQ5; -. DR PDBsum; 8HQ6; -. DR PDBsum; 8HUF; -. DR PDBsum; 8HUG; -. DR PDBsum; 8ITV; -. DR PDBsum; 9OGN; -. DR PDBsum; 9OGO; -. DR PDBsum; 9VM1; -. PE 1: Evidence at protein level; KW 3D-structure; Cytoplasm; GTPase activation; Nucleus; Phosphoprotein; KW Protein transport; Reference proteome; Transport. FT CHAIN 1..201 FT /note="Ran-specific GTPase-activating protein 1" FT /id="PRO_0000213670" FT DOMAIN 64..200 FT /note="RanBD1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00164" FT REGION 1..66 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 1..17 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 32..66 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOD_RES 60 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:17287358, FT ECO:0007744|PubMed:17330950, ECO:0007744|PubMed:18407956, FT ECO:0007744|PubMed:19779198" FT HELIX 64..68 FT /evidence="ECO:0007829|PDB:4HB2" FT STRAND 83..97 FT /evidence="ECO:0007829|PDB:4HAT" FT TURN 98..101 FT /evidence="ECO:0007829|PDB:4HAT" FT STRAND 102..116 FT /evidence="ECO:0007829|PDB:4HAT" FT TURN 117..119 FT /evidence="ECO:0007829|PDB:4HAT" FT STRAND 122..127 FT /evidence="ECO:0007829|PDB:4HAT" FT TURN 129..131 FT /evidence="ECO:0007829|PDB:4HAT" FT STRAND 134..139 FT /evidence="ECO:0007829|PDB:4HAT" FT STRAND 147..149 FT /evidence="ECO:0007829|PDB:5YST" FT STRAND 153..163 FT /evidence="ECO:0007829|PDB:4HAT" FT STRAND 165..168 FT /evidence="ECO:0007829|PDB:4WVF" FT STRAND 170..180 FT /evidence="ECO:0007829|PDB:4HAT" FT HELIX 181..199 FT /evidence="ECO:0007829|PDB:4HAT" SQ SEQUENCE 201 AA; 22953 MW; 46C3766B0906A75B CRC64; MSSEDKKPVV DKKEEAAPKP PSSAVFSMFG GKKAEKPETK KDEEDTKEET KKEGDDAPES PDIHFEPVVH LEKVDVKTME EDEEVLYKVR AKLFRFDADA KEWKERGTGD CKFLKNKKTN KVRILMRRDK TLKICANHII APEYTLKPNV GSDRSWVYAC TADIAEGEAE AFTFAIRFGS KENADKFKEE FEKAQEINKK A //