ID GAG_HV1A2 Reviewed; 502 AA. AC P03349; DT 21-JUL-1986, integrated into UniProtKB/Swiss-Prot. DT 23-JAN-2007, sequence version 3. DT 02-SEP-2026, entry version 175. DE RecName: Full=Gag polyprotein; DE AltName: Full=Pr55Gag; DE Contains: DE RecName: Full=Matrix protein p17; DE Short=MA; DE Contains: DE RecName: Full=Capsid protein p24; DE Short=CA; DE Contains: DE RecName: Full=Spacer peptide 1 {ECO:0000250|UniProtKB:P12493}; DE Short=SP1; DE AltName: Full=p2; DE Contains: DE RecName: Full=Nucleocapsid protein p7; DE Short=NC; DE Contains: DE RecName: Full=Spacer peptide 2 {ECO:0000250|UniProtKB:P12493}; DE Short=SP2; DE AltName: Full=p1; DE Contains: DE RecName: Full=p6-gag; GN Name=gag; OS Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2) OS (HIV-1). OC Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; OC Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus; OC Lentivirus humimdef1; Human immunodeficiency virus type 1. OX NCBI_TaxID=11685; OH NCBI_TaxID=9606; Homo sapiens (Human). RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC RNA]. RX PubMed=2578227; DOI=10.1126/science.2578227; RA Sanchez-Pescador R., Power M.D., Barr P.J., Steimer K.S., Stempien M.M., RA Brown-Shimer S.L., Gee W.W., Renard A., Randolph A., Levy J.A., Dina D., RA Luciw P.A.; RT "Nucleotide sequence and expression of an AIDS-associated retrovirus (ARV- RT 2)."; RL Science 227:484-492(1985). RN [2] RP REVIEW. RX PubMed=12873766; DOI=10.1016/s0005-2736(03)00163-9; RA Scarlata S., Carter C.; RT "Role of HIV-1 Gag domains in viral assembly."; RL Biochim. Biophys. Acta 1614:62-72(2003). RN [3] RP INTERACTION WITH HOST PACSIN2, AND MUTAGENESIS OF THR-458; LEU-491; LEU-494 RP AND PHE-495. RX PubMed=29891700; DOI=10.1073/pnas.1801849115; RA Popov S., Popova E., Inoue M., Wu Y., Goettlinger H.; RT "HIV-1 gag recruits PACSIN2 to promote virus spreading."; RL Proc. Natl. Acad. Sci. U.S.A. 115:7093-7098(2018). CC -!- FUNCTION: [Gag polyprotein]: Mediates, with Gag-Pol polyprotein, the CC essential events in virion assembly, including binding the plasma CC membrane, making the protein-protein interactions necessary to create CC spherical particles, recruiting the viral Env proteins, and packaging CC the genomic RNA via direct interactions with the RNA packaging sequence CC (Psi). {ECO:0000250|UniProtKB:P04591}. CC -!- FUNCTION: [Matrix protein p17]: Targets the polyprotein to the plasma CC membrane via a multipartite membrane-binding signal, that includes its CC myristoylated N-terminus (By similarity). Matrix protein is part of the CC pre-integration complex. Implicated in the release from host cell CC mediated by Vpu. Binds to RNA (By similarity). {ECO:0000250, CC ECO:0000250|UniProtKB:P12493}. CC -!- FUNCTION: [Capsid protein p24]: Forms the conical core that CC encapsulates the genomic RNA-nucleocapsid complex in the virion. Most CC core are conical, with only 7% tubular. The core is constituted by CC capsid protein hexamer subunits. The core is disassembled soon after CC virion entry (By similarity). The capsid promotes immune invasion by CC cloaking viral DNA from CGAS detection (By similarity). Host CC restriction factors such as TRIM5-alpha or TRIMCyp bind retroviral CC capsids and cause premature capsid disassembly, leading to blocks in CC reverse transcription. Capsid restriction by TRIM5 is one of the CC factors which restricts HIV-1 to the human species. Host PIN1 CC apparently facilitates the virion uncoating (By similarity). On the CC other hand, interactions with PDZD8 or CYPA stabilize the capsid (By CC similarity). {ECO:0000250|UniProtKB:P04591, CC ECO:0000250|UniProtKB:P12493}. CC -!- FUNCTION: [Nucleocapsid protein p7]: Encapsulates and protects viral CC dimeric unspliced genomic RNA (gRNA). Binds these RNAs through its zinc CC fingers. Acts as a nucleic acid chaperone which is involved in CC rearangement of nucleic acid secondary structure during gRNA CC retrotranscription. Also facilitates template switch leading to CC recombination. As part of the polyprotein, participates in gRNA CC dimerization, packaging, tRNA incorporation and virion assembly. CC {ECO:0000250|UniProtKB:P04591}. CC -!- FUNCTION: [p6-gag]: Plays a role in budding of the assembled particle CC by interacting with the host class E VPS proteins TSG101 and CC PDCD6IP/AIP1. {ECO:0000250|UniProtKB:P12493}. CC -!- SUBUNIT: [Gag polyprotein]: Homotrimer; further assembles as hexamers CC of trimers (By similarity). Oligomerization possibly creates a central CC hole into which the cytoplasmic tail of the gp41 envelope protein may CC be inserted. Interacts with host TRIM22; this interaction seems to CC disrupt proper trafficking of Gag polyprotein and may interfere with CC budding (By similarity). Interacts with host PDZD8 (By similarity). CC When ubiquitinated, interacts (via p6-gag domain) with host PACSIN2; CC this interaction allows PACSIN2 recruitment to viral assembly sites and CC its subsequent incorporation into virions (PubMed:29891700). Interacts CC with MOV10 (By similarity). {ECO:0000250|UniProtKB:P04591, CC ECO:0000269|PubMed:29891700}. CC -!- SUBUNIT: [Matrix protein p17]: Homotrimer; further assembles as CC hexamers of trimers. Interacts with gp41 (via C-terminus). Interacts CC with host CALM1; this interaction induces a conformational change in CC the Matrix protein, triggering exposure of the myristate group. CC Interacts with host AP3D1; this interaction allows the polyprotein CC trafficking to multivesicular bodies during virus assembly. Part of the CC pre-integration complex (PIC) which is composed of viral genome, matrix CC protein, Vpr and integrase. {ECO:0000250|UniProtKB:P04591, CC ECO:0000250|UniProtKB:P12493}. CC -!- SUBUNIT: [Capsid protein p24]: Homodimer; the homodimer further CC multimerizes as homohexamers or homopentamers (By similarity). CC Interacts with host NUP98 (By similarity). Interacts with host CC PPIA/CYPA; this interaction stabilizes the capsid (By similarity). CC Interacts with host NUP153 (By similarity). Interacts with host PDZD8; CC this interaction stabilizes the capsid. Interacts with host TRIM5; this CC interaction destabilizes the capsid (By similarity). Interacts with CC host CPSF6 (By similarity). Interacts with host NONO; the interaction CC is weak (By similarity). {ECO:0000250|UniProtKB:P04591, CC ECO:0000250|UniProtKB:P12493}. CC -!- SUBUNIT: [Nucleocapsid protein p7]: Interacts with host NUP98. CC {ECO:0000250|UniProtKB:P12493}. CC -!- SUBUNIT: [p6-gag]: Interacts with Vpr; this interaction allows Vpr CC incorporation into the virion (By similarity). Interacts with host CC TSG101 (By similarity). Interacts with host PDCD6IP/AIP1 (By CC similarity). {ECO:0000250|UniProtKB:P03348, CC ECO:0000250|UniProtKB:P12493}. CC -!- SUBCELLULAR LOCATION: [Gag polyprotein]: Host cell membrane CC {ECO:0000250|UniProtKB:P12493}; Lipid-anchor CC {ECO:0000250|UniProtKB:P12493}. Host endosome, host multivesicular body CC {ECO:0000250|UniProtKB:P12493}. Note=These locations are probably CC linked to virus assembly sites. The main location is the cell membrane, CC but under some circumstances, late endosomal compartments can serve as CC productive sites for virion assembly. {ECO:0000250|UniProtKB:P12493}. CC -!- SUBCELLULAR LOCATION: [Matrix protein p17]: Virion membrane CC {ECO:0000250|UniProtKB:P12493}; Lipid-anchor CC {ECO:0000250|UniProtKB:P12493}. Host nucleus {ECO:0000250}. Host CC cytoplasm {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: [Capsid protein p24]: Virion CC {ECO:0000250|UniProtKB:P12493}. CC -!- SUBCELLULAR LOCATION: [Nucleocapsid protein p7]: Virion CC {ECO:0000250|UniProtKB:P12493}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Ribosomal frameshifting; Named isoforms=2; CC Comment=Translation results in the formation of the Gag polyprotein CC most of the time. Ribosomal frameshifting at the gag-pol genes CC boundary occurs at low frequency and produces the Gag-Pol CC polyprotein. This strategy of translation probably allows the virus CC to modulate the quantity of each viral protein. Maintenance of a CC correct Gag to Gag-Pol ratio is essential for RNA dimerization and CC viral infectivity.; CC Name=Gag polyprotein; CC IsoId=P03349-1; Sequence=Displayed; CC Name=Gag-Pol polyprotein; CC IsoId=P03369-1; Sequence=External; CC -!- DOMAIN: Late-budding domains (L domains) are short sequence motifs CC essential for viral particle budding. They recruit proteins of the host CC ESCRT machinery (Endosomal Sorting Complex Required for Transport) or CC ESCRT-associated proteins. p6-gag contains two L domains: a PTAP/PSAP CC motif, which interacts with the UEV domain of TSG101 and a LYPX(n)L CC motif which interacts with PDCD6IP/AIP1. CC {ECO:0000250|UniProtKB:P12493}. CC -!- PTM: Gag-Pol polyprotein: Specific enzymatic cleavages by the viral CC protease yield mature proteins. {ECO:0000250|UniProtKB:P12493}. CC -!- PTM: [Matrix protein p17]: Tyrosine phosphorylated presumably in the CC virion by a host kinase. Phosphorylation is apparently not a major CC regulator of membrane association. {ECO:0000250|UniProtKB:P04591}. CC -!- PTM: Capsid protein p24 is phosphorylated possibly by host MAPK1; this CC phosphorylation is necessary for Pin1-mediated virion uncoating. CC {ECO:0000250|UniProtKB:P12493}. CC -!- PTM: Nucleocapsid protein p7 is methylated by host PRMT6, impairing its CC function by reducing RNA annealing and the initiation of reverse CC transcription. {ECO:0000250|UniProtKB:P03347}. CC -!- MISCELLANEOUS: HIV-1 lineages are divided in three main groups, M (for CC Major), O (for Outlier), and N (for New, or Non-M, Non-O). The vast CC majority of strains found worldwide belong to the group M. Group O CC seems to be endemic to and largely confined to Cameroon and neighboring CC countries in West Central Africa, where these viruses represent a small CC minority of HIV-1 strains. The group N is represented by a limited CC number of isolates from Cameroonian persons. The group M is further CC subdivided in 9 clades or subtypes (A to D, F to H, J and K). CC -!- MISCELLANEOUS: [Isoform Gag polyprotein]: Produced by conventional CC translation. CC -!- SIMILARITY: Belongs to the primate lentivirus group gag polyprotein CC family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; K02007; AAB59875.1; -; Genomic_RNA. DR PIR; A03947; FOVWA2. DR PDB; 4OBD; X-ray; 1.90 A; E/F=446-455. DR PDB; 4OBF; X-ray; 1.68 A; E/F=446-455. DR PDB; 4OBG; X-ray; 1.78 A; E/F=446-455. DR PDB; 4OBH; X-ray; 1.85 A; E/F=446-455. DR PDB; 4OBJ; X-ray; 1.75 A; C=446-455. DR PDB; 4OBK; X-ray; 1.65 A; C=446-455. DR PDB; 4QJ2; X-ray; 2.13 A; F/G=446-455. DR PDB; 4QJ6; X-ray; 1.50 A; E/F=446-455. DR PDB; 4QJ7; X-ray; 1.67 A; F/G=446-455. DR PDB; 4QJ8; X-ray; 2.00 A; E/F=446-454. DR PDB; 4QJ9; X-ray; 1.83 A; G=446-455. DR PDB; 4QJA; X-ray; 1.54 A; P=446-454. DR BMRB; P03349; -. DR SMR; P03349; -. DR EvolutionaryTrace; P03349; -. DR PRO; PR:P03349; -. DR GO; GO:0042025; C:host cell nucleus; IEA:UniProtKB-SubCell. DR GO; GO:0020002; C:host cell plasma membrane; ISS:UniProtKB. DR GO; GO:0072494; C:host multivesicular body; IEA:UniProtKB-SubCell. DR GO; GO:0019013; C:viral nucleocapsid; IEA:UniProtKB-KW. DR GO; GO:0055036; C:virion membrane; ISS:UniProtKB. DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW. DR GO; GO:0005198; F:structural molecule activity; IEA:InterPro. DR GO; GO:0008270; F:zinc ion binding; IEA:UniProtKB-KW. DR GO; GO:0039702; P:viral budding via host ESCRT complex; IEA:UniProtKB-KW. DR GO; GO:0075523; P:viral translational frameshifting; IEA:UniProtKB-KW. DR FunFam; 1.10.1200.30:FF:000001; Gag polyprotein; 1. DR FunFam; 1.10.150.90:FF:000001; Gag polyprotein; 1. DR FunFam; 1.10.375.10:FF:000001; Gag polyprotein; 1. DR FunFam; 1.20.5.760:FF:000001; Gag polyprotein; 1. DR FunFam; 4.10.60.10:FF:000001; Gag polyprotein; 1. DR Gene3D; 1.10.1200.30; -; 1. DR Gene3D; 6.10.250.390; -; 1. DR Gene3D; 1.10.375.10; Human Immunodeficiency Virus Type 1 Capsid Protein; 1. DR Gene3D; 1.10.150.90; Immunodeficiency lentiviruses, gag gene matrix protein p17; 1. DR Gene3D; 1.20.5.760; Single helix bin; 1. DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1. DR InterPro; IPR045345; Gag_p24_C. DR InterPro; IPR014817; Gag_p6. DR InterPro; IPR000071; Lentvrl_matrix_N. DR InterPro; IPR012344; Matrix_HIV/RSV_N. DR InterPro; IPR050195; Primate_lentivir_Gag_pol-like. DR InterPro; IPR008916; Retrov_capsid_C. DR InterPro; IPR008919; Retrov_capsid_N. DR InterPro; IPR010999; Retrovr_matrix. DR InterPro; IPR001878; Znf_CCHC. DR InterPro; IPR036875; Znf_CCHC_sf. DR PANTHER; PTHR40389:SF4; -; 1. DR PANTHER; PTHR40389; ENDOGENOUS RETROVIRUS GROUP K MEMBER 24 GAG POLYPROTEIN-RELATED; 1. DR Pfam; PF00540; Gag_p17; 1. DR Pfam; PF00607; Gag_p24; 1. DR Pfam; PF19317; Gag_p24_C; 1. DR Pfam; PF08705; Gag_p6; 1. DR Pfam; PF00098; zf-CCHC; 2. DR PRINTS; PR00234; HIV1MATRIX. DR SMART; SM00343; ZnF_C2HC; 2. DR SUPFAM; SSF47836; Retroviral matrix proteins; 1. DR SUPFAM; SSF47353; Retrovirus capsid dimerization domain-like; 1. DR SUPFAM; SSF47943; Retrovirus capsid protein, N-terminal core domain; 1. DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1. DR PROSITE; PS50158; ZF_CCHC; 2. DR PDBsum; 4OBD; -. DR PDBsum; 4OBF; -. DR PDBsum; 4OBG; -. DR PDBsum; 4OBH; -. DR PDBsum; 4OBJ; -. DR PDBsum; 4OBK; -. DR PDBsum; 4QJ2; -. DR PDBsum; 4QJ6; -. DR PDBsum; 4QJ7; -. DR PDBsum; 4QJ8; -. DR PDBsum; 4QJ9; -. DR PDBsum; 4QJA; -. PE 1: Evidence at protein level; KW 3D-structure; AIDS; Capsid protein; Host cell membrane; Host cytoplasm; KW Host endosome; Host membrane; Host nucleus; Host-virus interaction; KW Lipoprotein; Membrane; Metal-binding; Methylation; Myristate; KW Phosphoprotein; Repeat; Ribosomal frameshifting; RNA-binding; KW Viral budding; Viral budding via the host ESCRT complexes; KW Viral nucleoprotein; Viral release from host cell; Virion; Zinc; KW Zinc-finger. FT INIT_MET 1 FT /note="Removed; by host" FT /evidence="ECO:0000250" FT CHAIN 2..502 FT /note="Gag polyprotein" FT /id="PRO_0000261208" FT CHAIN 2..134 FT /note="Matrix protein p17" FT /evidence="ECO:0000250" FT /id="PRO_0000038505" FT CHAIN 135..365 FT /note="Capsid protein p24" FT /evidence="ECO:0000250" FT /id="PRO_0000038506" FT PEPTIDE 366..379 FT /note="Spacer peptide 1" FT /evidence="ECO:0000250" FT /id="PRO_0000038507" FT CHAIN 380..434 FT /note="Nucleocapsid protein p7" FT /evidence="ECO:0000250" FT /id="PRO_0000038508" FT PEPTIDE 435..450 FT /note="Spacer peptide 2" FT /evidence="ECO:0000250" FT /id="PRO_0000038509" FT CHAIN 451..502 FT /note="p6-gag" FT /evidence="ECO:0000250" FT /id="PRO_0000038510" FT ZN_FING 392..409 FT /note="CCHC-type 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00047" FT ZN_FING 413..430 FT /note="CCHC-type 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00047" FT REGION 7..31 FT /note="Interaction with Gp41" FT /evidence="ECO:0000250|UniProtKB:P12493" FT REGION 8..43 FT /note="Interaction with host CALM1" FT /evidence="ECO:0000250|UniProtKB:P04591" FT REGION 12..19 FT /note="Interaction with host AP3D1" FT /evidence="ECO:0000250|UniProtKB:P12497" FT REGION 14..33 FT /note="Interaction with membrane phosphatidylinositol 4,5- FT bisphosphate and RNA" FT /evidence="ECO:0000250|UniProtKB:P12493" FT REGION 73..77 FT /note="Interaction with membrane phosphatidylinositol 4,5- FT bisphosphate" FT /evidence="ECO:0000250|UniProtKB:P12493" FT REGION 106..129 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 191..229 FT /note="Interaction with host PPIA/CYPA and NUP153" FT /evidence="ECO:0000250|UniProtKB:P12493" FT REGION 219..227 FT /note="PPIA/CYPA-binding loop" FT /evidence="ECO:0000250|UniProtKB:P04591" FT REGION 279..365 FT /note="Dimerization/Multimerization of capsid protein p24" FT /evidence="ECO:0000250|UniProtKB:P04591" FT REGION 446..502 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT MOTIF 16..22 FT /note="Nuclear export signal" FT /evidence="ECO:0000250" FT MOTIF 26..32 FT /note="Nuclear localization signal" FT /evidence="ECO:0000250" FT MOTIF 457..460 FT /note="PTAP/PSAP motif" FT MOTIF 485..494 FT /note="LYPX(n)L motif" FT COMPBIAS 463..472 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT SITE 134..135 FT /note="Cleavage; by viral protease" FT /evidence="ECO:0000250" FT SITE 365..366 FT /note="Cleavage; by viral protease" FT /evidence="ECO:0000250" FT SITE 379..380 FT /note="Cleavage; by viral protease" FT /evidence="ECO:0000250" FT SITE 434..435 FT /note="Cleavage; by viral protease" FT /evidence="ECO:0000250" FT SITE 450..451 FT /note="Cleavage; by viral protease" FT /evidence="ECO:0000250" FT MOD_RES 150 FT /note="Phosphoserine; by host MAPK1" FT /evidence="ECO:0000250|UniProtKB:P12493" FT MOD_RES 389 FT /note="Asymmetric dimethylarginine; in Nucleocapsid protein FT p7; by host PRMT6" FT /evidence="ECO:0000250" FT MOD_RES 411 FT /note="Asymmetric dimethylarginine; in Nucleocapsid protein FT p7; by host PRMT6" FT /evidence="ECO:0000250" FT LIPID 2 FT /note="N-myristoyl glycine; by host" FT /evidence="ECO:0000250" FT MUTAGEN 458 FT /note="T->G: No effect on host PACSIN2 incorporation into FT virions." FT /evidence="ECO:0000269|PubMed:29891700" FT MUTAGEN 491 FT /note="L->A: No effect on host PACSIN2 incorporation into FT virions." FT /evidence="ECO:0000269|PubMed:29891700" FT MUTAGEN 494 FT /note="L->P: Slight decrease in host PACSIN2 incorporation FT into virions." FT /evidence="ECO:0000269|PubMed:29891700" FT MUTAGEN 495 FT /note="F->S: Slight decrease in host PACSIN2 incorporation FT into virions." FT /evidence="ECO:0000269|PubMed:29891700" SQ SEQUENCE 502 AA; 56066 MW; EF36C928D5F816E7 CRC64; MGARASVLSG GELDKWEKIR LRPGGKKKYK LKHIVWASRE LERFAVNPGL LETSEGCRQI LGQLQPSLQT GSEELRSLYN TVATLYCVHQ RIDVKDTKEA LEKIEEEQNK SKKKAQQAAA AAGTGNSSQV SQNYPIVQNL QGQMVHQAIS PRTLNAWVKV VEEKAFSPEV IPMFSALSEG ATPQDLNTML NTVGGHQAAM QMLKETINEE AAEWDRVHPV HAGPIAPGQM REPRGSDIAG TTSTLQEQIG WMTNNPPIPV GEIYKRWIIL GLNKIVRMYS PTSILDIRQG PKEPFRDYVD RFYKTLRAEQ ASQDVKNWMT ETLLVQNANP DCKTILKALG PAATLEEMMT ACQGVGGPGH KARVLAEAMS QVTNPANIMM QRGNFRNQRK TVKCFNCGKE GHIAKNCRAP RKKGCWRCGR EGHQMKDCTE RQANFLGKIW PSYKGRPGNF LQSRPEPTAP PEESFRFGEE KTTPSQKQEP IDKELYPLTS LRSLFGNDPS SQ //